RNA–Protein interactions for RNA: ENST00000443711.2

USP40-206, Transcript of ubiquitin specific peptidase 40, humanhuman

TSL 2 BASIC

Gene USP40, Length 628 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP40-206ENST00000443711 RIMS2Q9UQ26 1411 aa22.77■■□□□ 1.24
USP40-206ENST00000443711 ARHGAP23Q9P227 1491 aa22.77■■□□□ 1.24
USP40-206ENST00000443711 DCAF11Q8TEB1 546 aa22.76■■□□□ 1.23
USP40-206ENST00000443711 L3MBTL2Q969R5 705 aa22.76■■□□□ 1.23
USP40-206ENST00000443711 STAC3Q96MF2 364 aa22.76■■□□□ 1.23
USP40-206ENST00000443711 EID1Q9Y6B2 187 aa22.76■■□□□ 1.23
USP40-206ENST00000443711 PPLO60437 1756 aa22.76■■□□□ 1.23
USP40-206ENST00000443711 HSPA2P54652 639 aa22.75■■□□□ 1.23
USP40-206ENST00000443711 NEXMIFQ5QGS0 1516 aa22.75■■□□□ 1.23
USP40-206ENST00000443711 ZFYVE9O95405 1425 aa22.74■■□□□ 1.23
USP40-206ENST00000443711 VGFO15240 615 aaPredicted RBP22.74■■□□□ 1.23
USP40-206ENST00000443711 TXNDC2Q86VQ3 553 aa22.74■■□□□ 1.23
USP40-206ENST00000443711 ANKLE2Q86XL3 938 aa22.74■■□□□ 1.23
USP40-206ENST00000443711 IFT172Q9UG01 1749 aa22.74■■□□□ 1.23
USP40-206ENST00000443711 PPP1R15AO75807 674 aaPredicted RBP22.72■■□□□ 1.23
USP40-206ENST00000443711 KDM2AQ9Y2K7 1162 aa22.72■■□□□ 1.23
USP40-206ENST00000443711 LTKP29376 864 aa22.71■■□□□ 1.23
USP40-206ENST00000443711 NUTM2DQ5VT03 806 aaPredicted RBP22.71■■□□□ 1.23
USP40-206ENST00000443711 SCAF11Q99590 1463 aaKnown RBP22.69■■□□□ 1.22
USP40-206ENST00000443711 MYOM2P54296 1465 aa22.68■■□□□ 1.22
USP40-206ENST00000443711 POLR1AO95602 1720 aaPredicted RBP22.68■■□□□ 1.22
USP40-206ENST00000443711 ADGRF5Q8IZF2 1346 aa22.66■■□□□ 1.22
USP40-206ENST00000443711 NCKAP5LQ9HCH0 1330 aa22.66■■□□□ 1.22
USP40-206ENST00000443711 PLEKHG1Q9ULL1 1385 aa22.64■■□□□ 1.22
USP40-206ENST00000443711 BCANQ96GW7 911 aa22.64■■□□□ 1.21
USP40-206ENST00000443711 MED14O60244 1454 aa22.62■■□□□ 1.21
USP40-206ENST00000443711 NRXN1Q9ULB1 1477 aa22.62■■□□□ 1.21
USP40-206ENST00000443711 STRCQ7RTU9 1775 aa22.62■■□□□ 1.21
USP40-206ENST00000443711 NPHP4O75161 1426 aaPredicted RBP22.61■■□□□ 1.21
USP40-206ENST00000443711 PRAG1Q86YV5 1406 aa22.59■■□□□ 1.21
USP40-206ENST00000443711 ZEB1P37275 1124 aaPredicted RBP22.59■■□□□ 1.21
USP40-206ENST00000443711 SENP3Q9H4L4 574 aaPredicted RBP22.59■■□□□ 1.21
USP40-206ENST00000443711 PIK3C2GO75747 1445 aa22.58■■□□□ 1.21
USP40-206ENST00000443711 SETBP1Q9Y6X0 1596 aa22.58■■□□□ 1.2
USP40-206ENST00000443711 IQGAP1P46940 1657 aa22.58■■□□□ 1.2
USP40-206ENST00000443711 DMRT2Q9Y5R5 561 aa22.56■■□□□ 1.2
USP40-206ENST00000443711 NBPF8Q3BBV2 869 aa22.55■■□□□ 1.2
USP40-206ENST00000443711 C14orf93Q9H972 538 aaKnown RBP22.55■■□□□ 1.2
USP40-206ENST00000443711 NRXN3Q9Y4C0 1643 aa22.55■■□□□ 1.2
USP40-206ENST00000443711 ALKQ9UM73 1620 aa22.54■■□□□ 1.2
USP40-206ENST00000443711 SLC26A8Q96RN1 970 aa22.54■■□□□ 1.2
USP40-206ENST00000443711 TBX22Q9Y458 520 aa22.54■■□□□ 1.2
USP40-206ENST00000443711 LAMC1P11047 1609 aa22.53■■□□□ 1.2
USP40-206ENST00000443711 CFAP70Q5T0N1 1121 aa22.53■■□□□ 1.2
USP40-206ENST00000443711 ADAMTS13Q76LX8 1427 aa22.53■■□□□ 1.2
USP40-206ENST00000443711 KIAA1210Q9ULL0 1709 aa22.53■■□□□ 1.2
USP40-206ENST00000443711 DIP2AQ14689 1571 aa22.52■■□□□ 1.2
USP40-206ENST00000443711 TRPM1Q7Z4N2 1603 aa22.49■■□□□ 1.19
USP40-206ENST00000443711 SETD1AO15047 1707 aaKnown RBP22.48■■□□□ 1.19
USP40-206ENST00000443711 NBPF1Q3BBV0 1214 aa22.46■■□□□ 1.19
USP40-206ENST00000443711 PIK3R4Q99570 1358 aa22.46■■□□□ 1.19
USP40-206ENST00000443711 RALGAPBQ86X10 1494 aa22.46■■□□□ 1.19
USP40-206ENST00000443711 TMEM132EQ6IEE7 984 aa22.45■■□□□ 1.18
USP40-206ENST00000443711 METP08581 1390 aa22.45■■□□□ 1.18
USP40-206ENST00000443711 ROCK2O75116 1388 aaKnown RBP22.44■■□□□ 1.18
USP40-206ENST00000443711 ADGRB1O14514 1584 aa22.42■■□□□ 1.18
USP40-206ENST00000443711 CHD2O14647 1828 aaKnown RBP22.41■■□□□ 1.18
USP40-206ENST00000443711 ASXL1Q8IXJ9 1541 aa22.41■■□□□ 1.18
USP40-206ENST00000443711 GPRASP1Q5JY77 1395 aa22.4■■□□□ 1.18
USP40-206ENST00000443711 KCNA6P17658 529 aa22.39■■□□□ 1.17
USP40-206ENST00000443711 CARD11Q9BXL7 1154 aa22.39■■□□□ 1.17
USP40-206ENST00000443711 YTHDC2Q9H6S0 1430 aaKnown RBP22.39■■□□□ 1.17
USP40-206ENST00000443711 LRPPRCP42704 1394 aaKnown RBP22.38■■□□□ 1.17
USP40-206ENST00000443711 STK26Q9P289 416 aa22.38■■□□□ 1.17
USP40-206ENST00000443711 AMOTL2Q9Y2J4 779 aa22.38■■□□□ 1.17
USP40-206ENST00000443711 PTPRUQ92729 1446 aa22.38■■□□□ 1.17
USP40-206ENST00000443711 ABCC11Q96J66 1382 aa22.36■■□□□ 1.17
USP40-206ENST00000443711 TRAK1Q9UPV9 953 aa22.34■■□□□ 1.17
USP40-206ENST00000443711 KNDC1Q76NI1 1749 aa22.33■■□□□ 1.17
USP40-206ENST00000443711 XRN1Q8IZH2 1706 aaKnown RBP22.33■■□□□ 1.17
USP40-206ENST00000443711 NWD1Q149M9 1564 aa22.33■■□□□ 1.16
USP40-206ENST00000443711 ZNF335Q9H4Z2 1342 aaPredicted RBP22.32■■□□□ 1.16
USP40-206ENST00000443711 SIRT1Q96EB6 747 aa22.32■■□□□ 1.16
USP40-206ENST00000443711 TECPR2O15040 1411 aa22.31■■□□□ 1.16
USP40-206ENST00000443711 DLC1Q96QB1 1528 aa22.31■■□□□ 1.16
USP40-206ENST00000443711 STRCP1A6NGW2 1772 aa22.3■■□□□ 1.16
USP40-206ENST00000443711 CPS1P31327 1500 aa22.29■■□□□ 1.16
USP40-206ENST00000443711 NKTRP30414 1462 aaKnown RBP22.28■■□□□ 1.16
USP40-206ENST00000443711 EIF3AQ14152 1382 aaKnown RBP22.28■■□□□ 1.16
USP40-206ENST00000443711 PTCH1Q13635 1447 aa22.28■■□□□ 1.16
USP40-206ENST00000443711 ARHGEF28Q8N1W1 1705 aaKnown RBP22.28■■□□□ 1.16
USP40-206ENST00000443711 FAM135BQ49AJ0 1406 aa22.27■■□□□ 1.16
USP40-206ENST00000443711 PROSER2Q86WR7 435 aaPredicted RBP22.27■■□□□ 1.16
USP40-206ENST00000443711 POGKQ9P215 609 aa22.27■■□□□ 1.16
USP40-206ENST00000443711 ROBO2Q9HCK4 1378 aa22.26■■□□□ 1.15
USP40-206ENST00000443711 USP47Q96K76 1375 aa22.25■■□□□ 1.15
USP40-206ENST00000443711 EIF4G2P78344 907 aaKnown RBP eCLIP22.25■■□□□ 1.15
USP40-206ENST00000443711 WAPLQ7Z5K2 1190 aa22.25■■□□□ 1.15
USP40-206ENST00000443711 PRAM1Q96QH2 718 aa22.25■■□□□ 1.15
USP40-206ENST00000443711 CENPJQ9HC77 1338 aaPredicted RBP22.24■■□□□ 1.15
USP40-206ENST00000443711 LTBP4Q8N2S1 1624 aa22.2■■□□□ 1.15
USP40-206ENST00000443711 ST20-MTHFSA0A0A6YYL1 179 aa22.2■■□□□ 1.14
USP40-206ENST00000443711 HSPA5P11021 654 aaKnown RBP22.2■■□□□ 1.14
USP40-206ENST00000443711 SAFB2Q14151 953 aaKnown RBP eCLIP22.2■■□□□ 1.14
USP40-206ENST00000443711 PLEKHH1Q9ULM0 1364 aa22.2■■□□□ 1.14
USP40-206ENST00000443711 NCOA3Q9Y6Q9 1424 aa22.19■■□□□ 1.14
USP40-206ENST00000443711 LRRC7Q96NW7 1537 aa22.19■■□□□ 1.14
USP40-206ENST00000443711 QRICH2Q9H0J4 1663 aa22.18■■□□□ 1.14
USP40-206ENST00000443711 TMEM94Q12767 1356 aa22.18■■□□□ 1.14
USP40-206ENST00000443711 C14orf37Q86TY3 774 aa22.17■■□□□ 1.14
Retrieved 100 of 20,778 RNA–protein pairs in 26.4 ms