RNA–Protein interactions for RNA: ENST00000442708.5

USP39-205, Transcript of ubiquitin specific peptidase 39, humanhuman

TSL 4

Gene USP39, Length 561 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP39-205ENST00000442708 MED14O60244 1454 aa23.59■■□□□ 1.37
USP39-205ENST00000442708 DHX57Q6P158 1386 aaKnown RBP23.58■■□□□ 1.37
USP39-205ENST00000442708 IQGAP1P46940 1657 aa23.57■■□□□ 1.36
USP39-205ENST00000442708 NPHP4O75161 1426 aaPredicted RBP23.56■■□□□ 1.36
USP39-205ENST00000442708 SPATA31E1Q6ZUB1 1445 aa23.56■■□□□ 1.36
USP39-205ENST00000442708 NEXMIFQ5QGS0 1516 aa23.55■■□□□ 1.36
USP39-205ENST00000442708 NUTM2DQ5VT03 806 aaPredicted RBP23.55■■□□□ 1.36
USP39-205ENST00000442708 DMRT2Q9Y5R5 561 aa23.54■■□□□ 1.36
USP39-205ENST00000442708 EID1Q9Y6B2 187 aa23.54■■□□□ 1.36
USP39-205ENST00000442708 ZNF326Q5BKZ1 582 aaKnown RBP23.53■■□□□ 1.36
USP39-205ENST00000442708 PPLO60437 1756 aa23.52■■□□□ 1.36
USP39-205ENST00000442708 SENP3Q9H4L4 574 aaPredicted RBP23.5■■□□□ 1.35
USP39-205ENST00000442708 IFT172Q9UG01 1749 aa23.5■■□□□ 1.35
USP39-205ENST00000442708 RGL3Q3MIN7 710 aa23.49■■□□□ 1.35
USP39-205ENST00000442708 ABCF1Q8NE71 845 aaKnown RBP eCLIP23.47■■□□□ 1.35
USP39-205ENST00000442708 PLEKHG1Q9ULL1 1385 aa23.47■■□□□ 1.35
USP39-205ENST00000442708 PPP1R15AO75807 674 aaPredicted RBP23.46■■□□□ 1.35
USP39-205ENST00000442708 CERKQ8TCT0 537 aa23.46■■□□□ 1.35
USP39-205ENST00000442708 HDGFP51858 240 aaKnown RBP23.45■■□□□ 1.34
USP39-205ENST00000442708 NRXN3Q9Y4C0 1643 aa23.44■■□□□ 1.34
USP39-205ENST00000442708 RPGRIP1LQ68CZ1 1315 aa23.44■■□□□ 1.34
USP39-205ENST00000442708 ZNF335Q9H4Z2 1342 aaPredicted RBP23.42■■□□□ 1.34
USP39-205ENST00000442708 SLC26A8Q96RN1 970 aa23.42■■□□□ 1.34
USP39-205ENST00000442708 SIN3AQ96ST3 1273 aa23.42■■□□□ 1.34
USP39-205ENST00000442708 ADAMTS13Q76LX8 1427 aa23.42■■□□□ 1.34
USP39-205ENST00000442708 ILDR2Q71H61 639 aa23.41■■□□□ 1.34
USP39-205ENST00000442708 STRCP1A6NGW2 1772 aa23.41■■□□□ 1.34
USP39-205ENST00000442708 SETBP1Q9Y6X0 1596 aa23.4■■□□□ 1.34
USP39-205ENST00000442708 LTBP4Q8N2S1 1624 aa23.4■■□□□ 1.34
USP39-205ENST00000442708 BCANQ96GW7 911 aa23.39■■□□□ 1.33
USP39-205ENST00000442708 ADGRF5Q8IZF2 1346 aa23.38■■□□□ 1.33
USP39-205ENST00000442708 VGFO15240 615 aaPredicted RBP23.37■■□□□ 1.33
USP39-205ENST00000442708 SETD1AO15047 1707 aaKnown RBP23.36■■□□□ 1.33
USP39-205ENST00000442708 DIP2AQ14689 1571 aa23.35■■□□□ 1.33
USP39-205ENST00000442708 TBX22Q9Y458 520 aa23.34■■□□□ 1.33
USP39-205ENST00000442708 MYOM2P54296 1465 aa23.33■■□□□ 1.33
USP39-205ENST00000442708 NEUROD1Q13562 356 aa23.33■■□□□ 1.33
USP39-205ENST00000442708 CHD2O14647 1828 aaKnown RBP23.33■■□□□ 1.32
USP39-205ENST00000442708 NRXN1Q9ULB1 1477 aa23.32■■□□□ 1.32
USP39-205ENST00000442708 ALKQ9UM73 1620 aa23.32■■□□□ 1.32
USP39-205ENST00000442708 DCAF11Q8TEB1 546 aa23.3■■□□□ 1.32
USP39-205ENST00000442708 PIK3C2GO75747 1445 aa23.3■■□□□ 1.32
USP39-205ENST00000442708 METP08581 1390 aa23.29■■□□□ 1.32
USP39-205ENST00000442708 NWD1Q149M9 1564 aa23.29■■□□□ 1.32
USP39-205ENST00000442708 KDM2AQ9Y2K7 1162 aa23.29■■□□□ 1.32
USP39-205ENST00000442708 PTPRUQ92729 1446 aa23.28■■□□□ 1.32
USP39-205ENST00000442708 SOCS7O14512 581 aa23.28■■□□□ 1.32
USP39-205ENST00000442708 DISP3Q9P2K9 1392 aa23.27■■□□□ 1.31
USP39-205ENST00000442708 KCNA6P17658 529 aa23.26■■□□□ 1.31
USP39-205ENST00000442708 CPS1P31327 1500 aa23.26■■□□□ 1.31
USP39-205ENST00000442708 L3MBTL2Q969R5 705 aa23.25■■□□□ 1.31
USP39-205ENST00000442708 XIRP1Q702N8 1843 aaKnown RBP23.24■■□□□ 1.31
USP39-205ENST00000442708 ASXL1Q8IXJ9 1541 aa23.23■■□□□ 1.31
USP39-205ENST00000442708 XRN1Q8IZH2 1706 aaKnown RBP23.23■■□□□ 1.31
USP39-205ENST00000442708 PIK3R4Q99570 1358 aa23.23■■□□□ 1.31
USP39-205ENST00000442708 LRRC7Q96NW7 1537 aa23.23■■□□□ 1.31
USP39-205ENST00000442708 CFAP70Q5T0N1 1121 aa23.2■■□□□ 1.3
USP39-205ENST00000442708 LAMC1P11047 1609 aa23.19■■□□□ 1.3
USP39-205ENST00000442708 STAC3Q96MF2 364 aa23.19■■□□□ 1.3
USP39-205ENST00000442708 C14orf93Q9H972 538 aaKnown RBP23.19■■□□□ 1.3
USP39-205ENST00000442708 AMOTL2Q9Y2J4 779 aa23.19■■□□□ 1.3
USP39-205ENST00000442708 NKTRP30414 1462 aaKnown RBP23.18■■□□□ 1.3
USP39-205ENST00000442708 CCER1Q8TC90 406 aaPredicted RBP23.18■■□□□ 1.3
USP39-205ENST00000442708 TMEM132EQ6IEE7 984 aa23.17■■□□□ 1.3
USP39-205ENST00000442708 RBM33Q96EV2 1170 aaKnown RBP23.17■■□□□ 1.3
USP39-205ENST00000442708 PRAG1Q86YV5 1406 aa23.16■■□□□ 1.3
USP39-205ENST00000442708 CLSPNQ9HAW4 1339 aa23.16■■□□□ 1.3
USP39-205ENST00000442708 ADGRB1O14514 1584 aa23.14■■□□□ 1.3
USP39-205ENST00000442708 PROSER2Q86WR7 435 aaPredicted RBP23.14■■□□□ 1.29
USP39-205ENST00000442708 IQSEC2Q5JU85 1478 aa23.13■■□□□ 1.29
USP39-205ENST00000442708 TMEM94Q12767 1356 aa23.13■■□□□ 1.29
USP39-205ENST00000442708 TONSLQ96HA7 1378 aa23.13■■□□□ 1.29
USP39-205ENST00000442708 KIAA1210Q9ULL0 1709 aa23.12■■□□□ 1.29
USP39-205ENST00000442708 KNDC1Q76NI1 1749 aa23.11■■□□□ 1.29
USP39-205ENST00000442708 LRPPRCP42704 1394 aaKnown RBP23.1■■□□□ 1.29
USP39-205ENST00000442708 ROBO2Q9HCK4 1378 aa23.1■■□□□ 1.29
USP39-205ENST00000442708 YTHDC2Q9H6S0 1430 aaKnown RBP23.09■■□□□ 1.29
USP39-205ENST00000442708 NBPF8Q3BBV2 869 aa23.09■■□□□ 1.29
USP39-205ENST00000442708 STK26Q9P289 416 aa23.09■■□□□ 1.29
USP39-205ENST00000442708 TRPM1Q7Z4N2 1603 aa23.08■■□□□ 1.29
USP39-205ENST00000442708 TECPR2O15040 1411 aa23.08■■□□□ 1.28
USP39-205ENST00000442708 PTCH1Q13635 1447 aa23.08■■□□□ 1.28
USP39-205ENST00000442708 NBPF1Q3BBV0 1214 aa23.07■■□□□ 1.28
USP39-205ENST00000442708 ABCC11Q96J66 1382 aa23.06■■□□□ 1.28
USP39-205ENST00000442708 NALCNQ8IZF0 1738 aa23.03■■□□□ 1.28
USP39-205ENST00000442708 SIPA1L2Q9P2F8 1722 aaPredicted RBP23.02■■□□□ 1.28
USP39-205ENST00000442708 NCOA3Q9Y6Q9 1424 aa23.02■■□□□ 1.28
USP39-205ENST00000442708 PLEKHH1Q9ULM0 1364 aa23.01■■□□□ 1.27
USP39-205ENST00000442708 WAPLQ7Z5K2 1190 aa23.01■■□□□ 1.27
USP39-205ENST00000442708 DLC1Q96QB1 1528 aa23■■□□□ 1.27
USP39-205ENST00000442708 ARHGEF28Q8N1W1 1705 aaKnown RBP22.99■■□□□ 1.27
USP39-205ENST00000442708 TRAK1Q9UPV9 953 aa22.99■■□□□ 1.27
USP39-205ENST00000442708 UBAP1LF5GYI3 381 aa22.97■■□□□ 1.27
USP39-205ENST00000442708 TIMELESSQ9UNS1 1208 aa22.97■■□□□ 1.27
USP39-205ENST00000442708 MSH6P52701 1360 aa22.97■■□□□ 1.27
USP39-205ENST00000442708 FAM135BQ49AJ0 1406 aa22.97■■□□□ 1.27
USP39-205ENST00000442708 ADGRL3Q9HAR2 1447 aa22.97■■□□□ 1.27
USP39-205ENST00000442708 C14orf37Q86TY3 774 aa22.96■■□□□ 1.27
USP39-205ENST00000442708 SIRT1Q96EB6 747 aa22.96■■□□□ 1.27
USP39-205ENST00000442708 PRAM1Q96QH2 718 aa22.95■■□□□ 1.26
Retrieved 100 of 20,778 RNA–protein pairs in 145.8 ms