RNA–Protein interactions for RNA: ENST00000441438.2

SYNE2-206, Transcript of spectrin repeat containing nuclear envelope protein 2, humanhuman

TSL 1 (best)

Gene SYNE2, Length 3,084 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE2-206ENST00000441438 ABCF1Q8NE71 845 aaKnown RBP eCLIP13.78□□□□□ -0.2
SYNE2-206ENST00000441438 KCNV2Q8TDN2 545 aa13.78□□□□□ -0.2
SYNE2-206ENST00000441438 FOSBP53539 338 aa13.78□□□□□ -0.2
SYNE2-206ENST00000441438 DISP1Q96F81 1524 aa13.78□□□□□ -0.2
SYNE2-206ENST00000441438 CCDC96Q2M329 555 aa13.77□□□□□ -0.2
SYNE2-206ENST00000441438 CCER2I3L3R5 266 aa13.77□□□□□ -0.21
SYNE2-206ENST00000441438 ARAP3Q8WWN8 1544 aa13.77□□□□□ -0.21
SYNE2-206ENST00000441438 ERCC3P19447 782 aa13.77□□□□□ -0.21
SYNE2-206ENST00000441438 MAP4K4O95819 1239 aaPredicted RBP13.76□□□□□ -0.21
SYNE2-206ENST00000441438 MAP3K1Q13233 1512 aa13.75□□□□□ -0.21
SYNE2-206ENST00000441438 ABCC2Q92887 1545 aa13.75□□□□□ -0.21
SYNE2-206ENST00000441438 ADCY10Q96PN6 1610 aa13.75□□□□□ -0.21
SYNE2-206ENST00000441438 A6NJR5 290 aa13.75□□□□□ -0.21
SYNE2-206ENST00000441438 ONECUT3O60422 494 aaPredicted RBP13.74□□□□□ -0.21
SYNE2-206ENST00000441438 KRBA2Q6ZNG9 492 aa13.74□□□□□ -0.21
SYNE2-206ENST00000441438 SENP3Q9H4L4 574 aaPredicted RBP13.74□□□□□ -0.21
SYNE2-206ENST00000441438 NKX1-1Q15270 411 aaPredicted RBP13.74□□□□□ -0.21
SYNE2-206ENST00000441438 CARMIL2Q6F5E8 1435 aa13.73□□□□□ -0.21
SYNE2-206ENST00000441438 PLCD3Q8N3E9 789 aa13.73□□□□□ -0.21
SYNE2-206ENST00000441438 ZNF830Q96NB3 372 aaPredicted RBP13.73□□□□□ -0.21
SYNE2-206ENST00000441438 CCER1Q8TC90 406 aaPredicted RBP13.73□□□□□ -0.21
SYNE2-206ENST00000441438 MYCNP04198 464 aaPredicted RBP13.72□□□□□ -0.21
SYNE2-206ENST00000441438 NBPF20Q3BBV1 942 aa13.72□□□□□ -0.21
SYNE2-206ENST00000441438 LONRF3Q496Y0 759 aa13.72□□□□□ -0.21
SYNE2-206ENST00000441438 SDR16C5Q8N3Y7 309 aa13.72□□□□□ -0.21
SYNE2-206ENST00000441438 KIAA1522Q9P206 1035 aaPredicted RBP13.72□□□□□ -0.21
SYNE2-206ENST00000441438 MCCD1P59942 119 aaPredicted RBP13.72□□□□□ -0.21
SYNE2-206ENST00000441438 DRC1Q96MC2 740 aa13.72□□□□□ -0.21
SYNE2-206ENST00000441438 KDM4CQ9H3R0 1056 aa13.72□□□□□ -0.21
SYNE2-206ENST00000441438 CFAP43Q8NDM7 1665 aa13.71□□□□□ -0.21
SYNE2-206ENST00000441438 CYB5RLQ6IPT4 315 aa13.71□□□□□ -0.21
SYNE2-206ENST00000441438 GIMAP6Q6P9H5 292 aa13.71□□□□□ -0.21
SYNE2-206ENST00000441438 P3H3Q8IVL6 736 aa13.71□□□□□ -0.21
SYNE2-206ENST00000441438 PRDM4Q9UKN5 801 aa13.7□□□□□ -0.22
SYNE2-206ENST00000441438 ZMYND10O75800 440 aa13.7□□□□□ -0.22
SYNE2-206ENST00000441438 CASC1Q6TDU7 716 aa13.7□□□□□ -0.22
SYNE2-206ENST00000441438 FLIIQ13045 1269 aa13.7□□□□□ -0.22
SYNE2-206ENST00000441438 PNMA2Q9UL42 364 aa13.69□□□□□ -0.22
SYNE2-206ENST00000441438 CFAP74Q9C0B2 1584 aa13.69□□□□□ -0.22
SYNE2-206ENST00000441438 RRP9O43818 475 aaKnown RBP13.68□□□□□ -0.22
SYNE2-206ENST00000441438 TNIKQ9UKE5 1360 aa13.68□□□□□ -0.22
SYNE2-206ENST00000441438 ARMCX6Q7L4S7 300 aa13.67□□□□□ -0.22
SYNE2-206ENST00000441438 PSEN1P49768 467 aa13.67□□□□□ -0.22
SYNE2-206ENST00000441438 MORC4Q8TE76 937 aa13.67□□□□□ -0.22
SYNE2-206ENST00000441438 MAP3K4Q9Y6R4 1608 aa13.67□□□□□ -0.22
SYNE2-206ENST00000441438 RAPGEF6Q8TEU7 1601 aa13.67□□□□□ -0.22
SYNE2-206ENST00000441438 SSFA2P28290 1259 aa13.67□□□□□ -0.22
SYNE2-206ENST00000441438 POLD1P28340 1107 aa13.67□□□□□ -0.22
SYNE2-206ENST00000441438 GTPBP6O43824 516 aaPredicted RBP13.66□□□□□ -0.22
SYNE2-206ENST00000441438 APPP05067 770 aa13.66□□□□□ -0.22
SYNE2-206ENST00000441438 UBA5Q9GZZ9 404 aa13.66□□□□□ -0.22
SYNE2-206ENST00000441438 PAX3P23760 479 aa13.66□□□□□ -0.22
SYNE2-206ENST00000441438 MAMSTRQ6ZN01 415 aa13.65□□□□□ -0.22
SYNE2-206ENST00000441438 IRX3P78415 501 aaPredicted RBP13.65□□□□□ -0.22
SYNE2-206ENST00000441438 HECW1Q76N89 1606 aa13.65□□□□□ -0.22
SYNE2-206ENST00000441438 ZFYVE27Q5T4F4 411 aa13.65□□□□□ -0.23
SYNE2-206ENST00000441438 EGFL6Q8IUX8 553 aa13.65□□□□□ -0.23
SYNE2-206ENST00000441438 CCDC97Q96F63 343 aaPredicted RBP13.64□□□□□ -0.23
SYNE2-206ENST00000441438 KLHL42Q9P2K6 505 aa13.64□□□□□ -0.23
SYNE2-206ENST00000441438 KIF13AQ9H1H9 1805 aa13.64□□□□□ -0.23
SYNE2-206ENST00000441438 SEMA3FQ13275 785 aa13.64□□□□□ -0.23
SYNE2-206ENST00000441438 FAM117AQ9C073 453 aa13.64□□□□□ -0.23
SYNE2-206ENST00000441438 CEP120Q8N960 986 aa13.63□□□□□ -0.23
SYNE2-206ENST00000441438 UTP3Q9NQZ2 479 aaKnown RBP eCLIP13.63□□□□□ -0.23
SYNE2-206ENST00000441438 SLC4A2P04920 1241 aa13.63□□□□□ -0.23
SYNE2-206ENST00000441438 SERPINA10Q9UK55 444 aa13.63□□□□□ -0.23
SYNE2-206ENST00000441438 VTI1AQ96AJ9 217 aa13.62□□□□□ -0.23
SYNE2-206ENST00000441438 KIF4AO95239 1232 aa13.62□□□□□ -0.23
SYNE2-206ENST00000441438 ZCCHC11Q5TAX3 1644 aaKnown RBP13.62□□□□□ -0.23
SYNE2-206ENST00000441438 SREK1Q8WXA9 508 aaKnown RBP13.62□□□□□ -0.23
SYNE2-206ENST00000441438 ABCA9Q8IUA7 1624 aa13.62□□□□□ -0.23
SYNE2-206ENST00000441438 CREB3O43889 395 aa13.61□□□□□ -0.23
SYNE2-206ENST00000441438 PPP1R1BQ9UD71 204 aaPredicted RBP13.61□□□□□ -0.23
SYNE2-206ENST00000441438 CDCA7Q9BWT1 371 aaPredicted RBP13.61□□□□□ -0.23
SYNE2-206ENST00000441438 RHBDL3P58872 404 aa13.6□□□□□ -0.23
SYNE2-206ENST00000441438 CLEC4GQ6UXB4 293 aa13.6□□□□□ -0.23
SYNE2-206ENST00000441438 TSPAN18Q96SJ8 248 aa13.6□□□□□ -0.23
SYNE2-206ENST00000441438 PHLDB1Q86UU1 1377 aa13.6□□□□□ -0.23
SYNE2-206ENST00000441438 PLB1Q6P1J6 1458 aa13.6□□□□□ -0.23
SYNE2-206ENST00000441438 DIP2BQ9P265 1576 aa13.6□□□□□ -0.23
SYNE2-206ENST00000441438 CARD10Q9BWT7 1032 aa13.6□□□□□ -0.23
SYNE2-206ENST00000441438 CCDC18Q5T9S5 1454 aa13.59□□□□□ -0.23
SYNE2-206ENST00000441438 PROM2Q8N271 834 aa13.59□□□□□ -0.23
SYNE2-206ENST00000441438 SPOCK2Q92563 424 aa13.59□□□□□ -0.23
SYNE2-206ENST00000441438 PRG4Q92954 1404 aaPredicted RBP13.59□□□□□ -0.23
SYNE2-206ENST00000441438 OTUD6BQ8N6M0 293 aa13.58□□□□□ -0.23
SYNE2-206ENST00000441438 ERCC6L2Q5T890 1561 aa13.58□□□□□ -0.24
SYNE2-206ENST00000441438 MPNDQ8N594 471 aa13.58□□□□□ -0.24
SYNE2-206ENST00000441438 CEP162Q5TB80 1403 aa13.58□□□□□ -0.24
SYNE2-206ENST00000441438 ANP32BQ92688 251 aaKnown RBP13.58□□□□□ -0.24
SYNE2-206ENST00000441438 GPATCH3Q96I76 525 aa13.58□□□□□ -0.24
SYNE2-206ENST00000441438 FYCO1Q9BQS8 1478 aa13.57□□□□□ -0.24
SYNE2-206ENST00000441438 IRF6O14896 467 aa13.57□□□□□ -0.24
SYNE2-206ENST00000441438 EPB41L2O43491 1005 aaKnown RBP13.57□□□□□ -0.24
SYNE2-206ENST00000441438 CALD1Q05682 793 aaKnown RBP13.57□□□□□ -0.24
SYNE2-206ENST00000441438 SMC5Q8IY18 1101 aa13.57□□□□□ -0.24
SYNE2-206ENST00000441438 SH3BP5O60239 455 aa13.57□□□□□ -0.24
SYNE2-206ENST00000441438 PMM1Q92871 262 aa13.56□□□□□ -0.24
SYNE2-206ENST00000441438 HNRNPUL2Q1KMD3 747 aaKnown RBP13.56□□□□□ -0.24
SYNE2-206ENST00000441438 CCDC181Q5TID7 509 aa13.56□□□□□ -0.24
Retrieved 100 of 20,778 RNA–protein pairs in 15.9 ms