RNA–Protein interactions for RNA: ENST00000439561.6

COPB1-202, Transcript of coatomer protein complex subunit beta 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene COPB1, Length 3,382 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COPB1-202ENST00000439561 TRAK2O60296 914 aa11.47□□□□□ -0.57
COPB1-202ENST00000439561 TNNQ9UQP3 1299 aa11.47□□□□□ -0.57
COPB1-202ENST00000439561 DMRT2Q9Y5R5 561 aa11.47□□□□□ -0.57
COPB1-202ENST00000439561 UHRF1BP1Q6BDS2 1440 aa11.47□□□□□ -0.57
COPB1-202ENST00000439561 MBD5Q9P267 1494 aa11.47□□□□□ -0.57
COPB1-202ENST00000439561 U2AF1L5P0DN76 240 aaPredicted RBP11.46□□□□□ -0.57
COPB1-202ENST00000439561 U2AF1Q01081 240 aaKnown RBP eCLIP11.46□□□□□ -0.57
COPB1-202ENST00000439561 ARID3AQ99856 593 aa11.46□□□□□ -0.58
COPB1-202ENST00000439561 C22orf23Q9BZE7 217 aa11.46□□□□□ -0.58
COPB1-202ENST00000439561 MCM4P33991 863 aa11.45□□□□□ -0.58
COPB1-202ENST00000439561 SMC4Q9NTJ3 1288 aa11.45□□□□□ -0.58
COPB1-202ENST00000439561 PRAG1Q86YV5 1406 aa11.45□□□□□ -0.58
COPB1-202ENST00000439561 PDE3AQ14432 1141 aa11.45□□□□□ -0.58
COPB1-202ENST00000439561 CFAP53Q96M91 514 aa11.45□□□□□ -0.58
COPB1-202ENST00000439561 XRCC6P12956 609 aaKnown RBP eCLIP11.44□□□□□ -0.58
COPB1-202ENST00000439561 CHMP5Q9NZZ3 219 aa11.44□□□□□ -0.58
COPB1-202ENST00000439561 AMER1Q5JTC6 1135 aaPredicted RBP11.44□□□□□ -0.58
COPB1-202ENST00000439561 EIF3AQ14152 1382 aaKnown RBP11.44□□□□□ -0.58
COPB1-202ENST00000439561 BLMP54132 1417 aaPredicted RBP11.43□□□□□ -0.58
COPB1-202ENST00000439561 PLEKHH2Q8IVE3 1493 aa11.43□□□□□ -0.58
COPB1-202ENST00000439561 SAFB2Q14151 953 aaKnown RBP eCLIP11.43□□□□□ -0.58
COPB1-202ENST00000439561 WWC1Q8IX03 1113 aa11.43□□□□□ -0.58
COPB1-202ENST00000439561 TCP11L2Q8N4U5 519 aa11.43□□□□□ -0.58
COPB1-202ENST00000439561 PCDHB15Q9Y5E8 787 aa11.43□□□□□ -0.58
COPB1-202ENST00000439561 NKTRP30414 1462 aaKnown RBP11.43□□□□□ -0.58
COPB1-202ENST00000439561 ZBTB7CA1YPR0 619 aa11.42□□□□□ -0.58
COPB1-202ENST00000439561 ZMYM4Q5VZL5 1548 aa11.42□□□□□ -0.58
COPB1-202ENST00000439561 CFAP70Q5T0N1 1121 aa11.41□□□□□ -0.58
COPB1-202ENST00000439561 PKNOX2Q96KN3 472 aa11.41□□□□□ -0.58
COPB1-202ENST00000439561 TRAK1Q9UPV9 953 aa11.41□□□□□ -0.58
COPB1-202ENST00000439561 ZNF608Q9ULD9 1512 aaPredicted RBP11.41□□□□□ -0.58
COPB1-202ENST00000439561 GOLGA6L22H0YM25 854 aa11.4□□□□□ -0.58
COPB1-202ENST00000439561 RLBP1P12271 317 aa11.4□□□□□ -0.58
COPB1-202ENST00000439561 TSR2Q969E8 191 aaKnown RBP11.4□□□□□ -0.58
COPB1-202ENST00000439561 TBC1D32Q96NH3 1257 aa11.4□□□□□ -0.58
COPB1-202ENST00000439561 ARHGEF12Q9NZN5 1544 aa11.4□□□□□ -0.58
COPB1-202ENST00000439561 MRE11P49959 708 aa11.4□□□□□ -0.58
COPB1-202ENST00000439561 ZKSCAN2Q63HK3 967 aa11.4□□□□□ -0.58
COPB1-202ENST00000439561 LNPKQ9C0E8 428 aa11.4□□□□□ -0.58
COPB1-202ENST00000439561 DDX11L8A8MPP1 907 aa11.39□□□□□ -0.59
COPB1-202ENST00000439561 DZIP1LQ8IYY4 767 aaKnown RBP11.39□□□□□ -0.59
COPB1-202ENST00000439561 GBP4Q96PP9 640 aa11.39□□□□□ -0.59
COPB1-202ENST00000439561 COL17A1Q9UMD9 1497 aaPredicted RBP11.39□□□□□ -0.59
COPB1-202ENST00000439561 RARSP54136 660 aaKnown RBP11.39□□□□□ -0.59
COPB1-202ENST00000439561 TPRNQ4KMQ1 711 aa11.39□□□□□ -0.59
COPB1-202ENST00000439561 RSPH4AQ5TD94 716 aa11.39□□□□□ -0.59
COPB1-202ENST00000439561 GRPEL1Q9HAV7 217 aa11.39□□□□□ -0.59
COPB1-202ENST00000439561 USP19O94966 1318 aa11.39□□□□□ -0.59
COPB1-202ENST00000439561 RAPGEF6Q8TEU7 1601 aa11.39□□□□□ -0.59
COPB1-202ENST00000439561 RUNDC1Q96C34 613 aa11.38□□□□□ -0.59
COPB1-202ENST00000439561 POLR1AO95602 1720 aaPredicted RBP11.38□□□□□ -0.59
COPB1-202ENST00000439561 MTHFSP49914 203 aa11.37□□□□□ -0.59
COPB1-202ENST00000439561 NUTM2DQ5VT03 806 aaPredicted RBP11.37□□□□□ -0.59
COPB1-202ENST00000439561 ESPNB1AK53 854 aa11.37□□□□□ -0.59
COPB1-202ENST00000439561 MSNP26038 577 aaKnown RBP11.37□□□□□ -0.59
COPB1-202ENST00000439561 DISP1Q96F81 1524 aa11.36□□□□□ -0.59
COPB1-202ENST00000439561 SLC12A5Q9H2X9 1139 aa11.36□□□□□ -0.59
COPB1-202ENST00000439561 A2MP01023 1474 aa11.36□□□□□ -0.59
COPB1-202ENST00000439561 ZNF521Q96K83 1311 aa11.36□□□□□ -0.59
COPB1-202ENST00000439561 KIF3BO15066 747 aa11.36□□□□□ -0.59
COPB1-202ENST00000439561 ADGRL2O95490 1459 aa11.35□□□□□ -0.59
COPB1-202ENST00000439561 MAGI1Q96QZ7 1491 aaPredicted RBP11.35□□□□□ -0.59
COPB1-202ENST00000439561 KIF21AQ7Z4S6 1674 aa11.35□□□□□ -0.59
COPB1-202ENST00000439561 APBB1O00213 710 aa11.35□□□□□ -0.59
COPB1-202ENST00000439561 FAM135AQ9P2D6 1515 aa11.35□□□□□ -0.59
COPB1-202ENST00000439561 DDX49Q9Y6V7 483 aaKnown RBP11.35□□□□□ -0.59
COPB1-202ENST00000439561 MVPQ14764 893 aaKnown RBP11.34□□□□□ -0.59
COPB1-202ENST00000439561 ANKRD45Q5TZF3 282 aa11.34□□□□□ -0.59
COPB1-202ENST00000439561 KIAA0556O60303 1618 aa11.34□□□□□ -0.59
COPB1-202ENST00000439561 MAGI2Q86UL8 1455 aa11.34□□□□□ -0.59
COPB1-202ENST00000439561 ELL2O00472 640 aaPredicted RBP11.34□□□□□ -0.59
COPB1-202ENST00000439561 EXOSC9Q06265 439 aaKnown RBP11.34□□□□□ -0.59
COPB1-202ENST00000439561 PTPRGP23470 1445 aa11.34□□□□□ -0.59
COPB1-202ENST00000439561 FOXD4L5Q5VV16 416 aaPredicted RBP11.33□□□□□ -0.6
COPB1-202ENST00000439561 FOXD4L4Q8WXT5 416 aaPredicted RBP11.33□□□□□ -0.6
COPB1-202ENST00000439561 ZMYND15Q9H091 742 aa11.33□□□□□ -0.6
COPB1-202ENST00000439561 CLCN1P35523 988 aa11.33□□□□□ -0.6
COPB1-202ENST00000439561 CCDC141Q6ZP82 1450 aa11.32□□□□□ -0.6
COPB1-202ENST00000439561 SPAG9O60271 1321 aaKnown RBP11.32□□□□□ -0.6
COPB1-202ENST00000439561 RBM10P98175 930 aaKnown RBP11.32□□□□□ -0.6
COPB1-202ENST00000439561 TMEM132EQ6IEE7 984 aa11.32□□□□□ -0.6
COPB1-202ENST00000439561 AFAP1Q8N556 730 aa11.32□□□□□ -0.6
COPB1-202ENST00000439561 ANTXR1Q9H6X2 564 aa11.32□□□□□ -0.6
COPB1-202ENST00000439561 ADAMTS12P58397 1594 aa11.32□□□□□ -0.6
COPB1-202ENST00000439561 EFCAB2Q5VUJ9 269 aa11.32□□□□□ -0.6
COPB1-202ENST00000439561 CARD14Q9BXL6 1004 aa11.32□□□□□ -0.6
COPB1-202ENST00000439561 C1orf115Q9H7X2 142 aa11.32□□□□□ -0.6
COPB1-202ENST00000439561 ITSN2Q9NZM3 1697 aa11.32□□□□□ -0.6
COPB1-202ENST00000439561 GRIN2AQ12879 1464 aa11.32□□□□□ -0.6
COPB1-202ENST00000439561 NGEFQ8N5V2 710 aa11.31□□□□□ -0.6
COPB1-202ENST00000439561 STK26Q9P289 416 aa11.31□□□□□ -0.6
COPB1-202ENST00000439561 DDX19BQ9UMR2 479 aa11.31□□□□□ -0.6
COPB1-202ENST00000439561 ARHGAP5Q13017 1502 aa11.31□□□□□ -0.6
COPB1-202ENST00000439561 ERCC6Q03468 1493 aa11.31□□□□□ -0.6
COPB1-202ENST00000439561 TNPO1Q92973 898 aaKnown RBP11.31□□□□□ -0.6
COPB1-202ENST00000439561 NOB1Q9ULX3 412 aaKnown RBP11.31□□□□□ -0.6
COPB1-202ENST00000439561 PTMAP06454 111 aaKnown RBP11.3□□□□□ -0.6
COPB1-202ENST00000439561 NASPP49321 788 aaPredicted RBP11.3□□□□□ -0.6
COPB1-202ENST00000439561 SRPK2P78362 688 aaKnown RBP11.3□□□□□ -0.6
COPB1-202ENST00000439561 FAM13BQ9NYF5 915 aa11.3□□□□□ -0.6
Retrieved 100 of 20,778 RNA–protein pairs in 7.2 ms