RNA–Protein interactions for RNA: ENST00000438888.5

PRAME-208, Transcript of preferentially expressed antigen in melanoma, humanhuman

APPRIS ALT2 TSL 4

Gene PRAME, Length 566 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PRAME-208ENST00000438888 RPRD2Q5VT52 1461 aaKnown RBP18.96■□□□□ 0.63
PRAME-208ENST00000438888 CHGAP10645 457 aaKnown RBP18.95■□□□□ 0.62
PRAME-208ENST00000438888 ITGAEP38570 1179 aa18.94■□□□□ 0.62
PRAME-208ENST00000438888 RIMS2Q9UQ26 1411 aa18.92■□□□□ 0.62
PRAME-208ENST00000438888 UNC13BO14795 1591 aa18.92■□□□□ 0.62
PRAME-208ENST00000438888 GCC2Q8IWJ2 1684 aa18.92■□□□□ 0.62
PRAME-208ENST00000438888 ZFYVE9O95405 1425 aa18.91■□□□□ 0.62
PRAME-208ENST00000438888 NKTRP30414 1462 aaKnown RBP18.9■□□□□ 0.62
PRAME-208ENST00000438888 NWD1Q149M9 1564 aa18.9■□□□□ 0.62
PRAME-208ENST00000438888 NUTM2DQ5VT03 806 aaPredicted RBP18.9■□□□□ 0.62
PRAME-208ENST00000438888 PLEKHG1Q9ULL1 1385 aa18.9■□□□□ 0.62
PRAME-208ENST00000438888 FAM135BQ49AJ0 1406 aa18.9■□□□□ 0.62
PRAME-208ENST00000438888 MYO5BQ9ULV0 1848 aa18.89■□□□□ 0.61
PRAME-208ENST00000438888 MSH6P52701 1360 aa18.88■□□□□ 0.61
PRAME-208ENST00000438888 TMEM131LA2VDJ0 1609 aa18.88■□□□□ 0.61
PRAME-208ENST00000438888 ROBO1Q9Y6N7 1651 aa18.88■□□□□ 0.61
PRAME-208ENST00000438888 ROCK1Q13464 1354 aa18.87■□□□□ 0.61
PRAME-208ENST00000438888 E9PCH4 1651 aa18.86■□□□□ 0.61
PRAME-208ENST00000438888 HDGFP51858 240 aaKnown RBP18.86■□□□□ 0.61
PRAME-208ENST00000438888 NUP155O75694 1391 aa18.85■□□□□ 0.61
PRAME-208ENST00000438888 RGS17Q9UGC6 210 aaPredicted RBP18.84■□□□□ 0.61
PRAME-208ENST00000438888 IQGAP3Q86VI3 1631 aa18.84■□□□□ 0.61
PRAME-208ENST00000438888 C14orf37Q86TY3 774 aa18.83■□□□□ 0.6
PRAME-208ENST00000438888 ABCF1Q8NE71 845 aaKnown RBP eCLIP18.83■□□□□ 0.6
PRAME-208ENST00000438888 SLAIN2Q9P270 581 aa18.81■□□□□ 0.6
PRAME-208ENST00000438888 TBX22Q9Y458 520 aa18.8■□□□□ 0.6
PRAME-208ENST00000438888 ADAMTS13Q76LX8 1427 aa18.8■□□□□ 0.6
PRAME-208ENST00000438888 CHD2O14647 1828 aaKnown RBP18.79■□□□□ 0.6
PRAME-208ENST00000438888 PHLPP1O60346 1717 aa18.76■□□□□ 0.59
PRAME-208ENST00000438888 DIP2AQ14689 1571 aa18.76■□□□□ 0.59
PRAME-208ENST00000438888 RRBP1Q9P2E9 1410 aaKnown RBP18.75■□□□□ 0.59
PRAME-208ENST00000438888 POTEAQ6S8J7 498 aa18.75■□□□□ 0.59
PRAME-208ENST00000438888 ZNF326Q5BKZ1 582 aaKnown RBP18.74■□□□□ 0.59
PRAME-208ENST00000438888 TRPM2O94759 1503 aa18.73■□□□□ 0.59
PRAME-208ENST00000438888 JCADQ9P266 1359 aa18.72■□□□□ 0.59
PRAME-208ENST00000438888 ATF3P18847 181 aa18.72■□□□□ 0.59
PRAME-208ENST00000438888 TRIM26Q12899 539 aaPredicted RBP18.72■□□□□ 0.59
PRAME-208ENST00000438888 AMOTL2Q9Y2J4 779 aa18.72■□□□□ 0.59
PRAME-208ENST00000438888 PTPRUQ92729 1446 aa18.72■□□□□ 0.59
PRAME-208ENST00000438888 PIK3R4Q99570 1358 aa18.71■□□□□ 0.59
PRAME-208ENST00000438888 CADPS2Q86UW7 1296 aa18.71■□□□□ 0.59
PRAME-208ENST00000438888 NCOA3Q9Y6Q9 1424 aa18.71■□□□□ 0.59
PRAME-208ENST00000438888 COL16A1Q07092 1604 aaPredicted RBP18.7■□□□□ 0.58
PRAME-208ENST00000438888 SPHKAPQ2M3C7 1700 aa18.69■□□□□ 0.58
PRAME-208ENST00000438888 SIPA1L2Q9P2F8 1722 aaPredicted RBP18.69■□□□□ 0.58
PRAME-208ENST00000438888 C19orf44Q9H6X5 657 aa18.69■□□□□ 0.58
PRAME-208ENST00000438888 MEX3CQ5U5Q3 659 aaKnown RBP18.66■□□□□ 0.58
PRAME-208ENST00000438888 NRXN3Q9Y4C0 1643 aa18.66■□□□□ 0.58
PRAME-208ENST00000438888 SETBP1Q9Y6X0 1596 aa18.65■□□□□ 0.58
PRAME-208ENST00000438888 LRP6O75581 1613 aa18.65■□□□□ 0.58
PRAME-208ENST00000438888 CLTCL1P53675 1640 aa18.64■□□□□ 0.57
PRAME-208ENST00000438888 METP08581 1390 aa18.64■□□□□ 0.57
PRAME-208ENST00000438888 AHDC1Q5TGY3 1603 aaPredicted RBP18.63■□□□□ 0.57
PRAME-208ENST00000438888 BRINP3Q76B58 766 aa18.63■□□□□ 0.57
PRAME-208ENST00000438888 XRN1Q8IZH2 1706 aaKnown RBP18.63■□□□□ 0.57
PRAME-208ENST00000438888 NAIPQ13075 1403 aa18.62■□□□□ 0.57
PRAME-208ENST00000438888 NEXMIFQ5QGS0 1516 aa18.61■□□□□ 0.57
PRAME-208ENST00000438888 SPATA31A6Q5VVP1 1343 aa18.61■□□□□ 0.57
PRAME-208ENST00000438888 TRIM52Q96A61 297 aa18.61■□□□□ 0.57
PRAME-208ENST00000438888 SETD1AO15047 1707 aaKnown RBP18.6■□□□□ 0.57
PRAME-208ENST00000438888 NUTM2BA6NNL0 878 aaPredicted RBP18.6■□□□□ 0.57
PRAME-208ENST00000438888 NUTM2EB1AL46 878 aaPredicted RBP18.6■□□□□ 0.57
PRAME-208ENST00000438888 NUTM2AQ8IVF1 878 aaPredicted RBP18.6■□□□□ 0.57
PRAME-208ENST00000438888 ASXL1Q8IXJ9 1541 aa18.59■□□□□ 0.57
PRAME-208ENST00000438888 DCCP43146 1447 aa18.59■□□□□ 0.57
PRAME-208ENST00000438888 MST1RQ04912 1400 aa18.58■□□□□ 0.57
PRAME-208ENST00000438888 SHPRHQ149N8 1683 aa18.57■□□□□ 0.56
PRAME-208ENST00000438888 DDX17Q92841 729 aaKnown RBP18.56■□□□□ 0.56
PRAME-208ENST00000438888 PCGF6Q9BYE7 350 aa18.56■□□□□ 0.56
PRAME-208ENST00000438888 ADGRL3Q9HAR2 1447 aa18.56■□□□□ 0.56
PRAME-208ENST00000438888 ZNF772Q68DY9 489 aaPredicted RBP18.54■□□□□ 0.56
PRAME-208ENST00000438888 SLC4A1APQ9BWU0 796 aaKnown RBP18.54■□□□□ 0.56
PRAME-208ENST00000438888 KIF1BO60333 1816 aa18.53■□□□□ 0.56
PRAME-208ENST00000438888 HFM1A2PYH4 1435 aa18.53■□□□□ 0.56
PRAME-208ENST00000438888 NALCNQ8IZF0 1738 aa18.53■□□□□ 0.56
PRAME-208ENST00000438888 SETD5Q9C0A6 1442 aa18.5■□□□□ 0.55
PRAME-208ENST00000438888 NHSL1Q5SYE7 1610 aa18.5■□□□□ 0.55
PRAME-208ENST00000438888 VGFO15240 615 aaPredicted RBP18.5■□□□□ 0.55
PRAME-208ENST00000438888 FOXD1Q16676 465 aa18.5■□□□□ 0.55
PRAME-208ENST00000438888 ROBO2Q9HCK4 1378 aa18.49■□□□□ 0.55
PRAME-208ENST00000438888 AFF2P51816 1311 aa18.49■□□□□ 0.55
PRAME-208ENST00000438888 LRRC59Q96AG4 307 aaKnown RBP18.48■□□□□ 0.55
PRAME-208ENST00000438888 PTCH1Q13635 1447 aa18.48■□□□□ 0.55
PRAME-208ENST00000438888 C1orf167Q5SNV9 1468 aa18.47■□□□□ 0.55
PRAME-208ENST00000438888 PNPLA6Q8IY17 1366 aa18.46■□□□□ 0.55
PRAME-208ENST00000438888 RXRBP28702 533 aa18.46■□□□□ 0.55
PRAME-208ENST00000438888 C8orf37Q96NL8 207 aa18.46■□□□□ 0.55
PRAME-208ENST00000438888 RPGRIP1LQ68CZ1 1315 aa18.45■□□□□ 0.54
PRAME-208ENST00000438888 ORAI2Q96SN7 254 aa18.44■□□□□ 0.54
PRAME-208ENST00000438888 ADAMTS2O95450 1211 aa18.43■□□□□ 0.54
PRAME-208ENST00000438888 RGL3Q3MIN7 710 aa18.42■□□□□ 0.54
PRAME-208ENST00000438888 PPLO60437 1756 aa18.41■□□□□ 0.54
PRAME-208ENST00000438888 UPF1Q92900 1129 aaKnown RBP eCLIP18.41■□□□□ 0.54
PRAME-208ENST00000438888 CCDC144AA2RUR9 1427 aa18.4■□□□□ 0.54
PRAME-208ENST00000438888 ADGRF5Q8IZF2 1346 aa18.4■□□□□ 0.54
PRAME-208ENST00000438888 STK26Q9P289 416 aa18.39■□□□□ 0.53
PRAME-208ENST00000438888 NGLY1Q96IV0 654 aa18.38■□□□□ 0.53
PRAME-208ENST00000438888 PRAG1Q86YV5 1406 aa18.38■□□□□ 0.53
PRAME-208ENST00000438888 QTRT2Q9H974 415 aaKnown RBP18.37■□□□□ 0.53
PRAME-208ENST00000438888 NUTM2FA1L443 756 aa18.36■□□□□ 0.53
Retrieved 100 of 20,778 RNA–protein pairs in 64.8 ms