RNA–Protein interactions for RNA: ENST00000437564.5

MCF2-205, Transcript of MCF.2 cell line derived transforming sequence, humanhuman

APPRIS ALT2 TSL 1 (best)

Gene MCF2, Length 1,988 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MCF2-205ENST00000437564 FAM9BQ8IZU0 186 aa8.16□□□□□ -1.1
MCF2-205ENST00000437564 KIF3AQ9Y496 699 aa8.16□□□□□ -1.1
MCF2-205ENST00000437564 TULP2O00295 520 aa8.15□□□□□ -1.1
MCF2-205ENST00000437564 CDCA8Q53HL2 280 aa8.15□□□□□ -1.1
MCF2-205ENST00000437564 SPDYE1Q8NFV5 336 aaPredicted RBP8.15□□□□□ -1.1
MCF2-205ENST00000437564 NCAPGQ9BPX3 1015 aa8.15□□□□□ -1.1
MCF2-205ENST00000437564 SMC4Q9NTJ3 1288 aa8.15□□□□□ -1.1
MCF2-205ENST00000437564 MRVI1Q9Y6F6 885 aa8.15□□□□□ -1.1
MCF2-205ENST00000437564 FSD2A1L4K1 749 aa8.15□□□□□ -1.11
MCF2-205ENST00000437564 HDAC1Q13547 482 aaPredicted RBP8.15□□□□□ -1.11
MCF2-205ENST00000437564 TIGD1Q96MW7 591 aa8.15□□□□□ -1.11
MCF2-205ENST00000437564 LOC102724159A0A0B4J2E5 919 aa8.14□□□□□ -1.11
MCF2-205ENST00000437564 KCNJ4P48050 445 aa8.14□□□□□ -1.11
MCF2-205ENST00000437564 MRE11P49959 708 aa8.14□□□□□ -1.11
MCF2-205ENST00000437564 MFAP1P55081 439 aaKnown RBP8.14□□□□□ -1.11
MCF2-205ENST00000437564 MTA1Q13330 715 aa8.14□□□□□ -1.11
MCF2-205ENST00000437564 PWP2Q15269 919 aaKnown RBP8.14□□□□□ -1.11
MCF2-205ENST00000437564 MNS1Q8NEH6 495 aa8.14□□□□□ -1.11
MCF2-205ENST00000437564 RNF217Q8TC41 542 aa8.14□□□□□ -1.11
MCF2-205ENST00000437564 CFAP65Q6ZU64 1925 aaKnown RBP8.14□□□□□ -1.11
MCF2-205ENST00000437564 PRR29P0C7W0 189 aa8.13□□□□□ -1.11
MCF2-205ENST00000437564 FAM210AQ96ND0 272 aa8.13□□□□□ -1.11
MCF2-205ENST00000437564 BRMS1Q9HCU9 246 aa8.13□□□□□ -1.11
MCF2-205ENST00000437564 PCDH10Q9P2E7 1040 aa8.13□□□□□ -1.11
MCF2-205ENST00000437564 PHLDB1Q86UU1 1377 aa8.13□□□□□ -1.11
MCF2-205ENST00000437564 POTEIP0CG38 1075 aa8.13□□□□□ -1.11
MCF2-205ENST00000437564 XRCC6P12956 609 aaKnown RBP eCLIP8.13□□□□□ -1.11
MCF2-205ENST00000437564 ANKRD23Q86SG2 305 aa8.13□□□□□ -1.11
MCF2-205ENST00000437564 KIF16BQ96L93 1317 aa8.13□□□□□ -1.11
MCF2-205ENST00000437564 NINLQ9Y2I6 1382 aa8.12□□□□□ -1.11
MCF2-205ENST00000437564 DCAF8Q5TAQ9 597 aa8.12□□□□□ -1.11
MCF2-205ENST00000437564 NECTIN2Q92692 538 aa8.12□□□□□ -1.11
MCF2-205ENST00000437564 ITFG2Q969R8 447 aa8.12□□□□□ -1.11
MCF2-205ENST00000437564 TSPAN18Q96SJ8 248 aa8.12□□□□□ -1.11
MCF2-205ENST00000437564 B4GALNT3Q6L9W6 998 aa8.11□□□□□ -1.11
MCF2-205ENST00000437564 MPNDQ8N594 471 aa8.11□□□□□ -1.11
MCF2-205ENST00000437564 TMC1Q8TDI8 760 aa8.11□□□□□ -1.11
MCF2-205ENST00000437564 KCNH8Q96L42 1107 aa8.11□□□□□ -1.11
MCF2-205ENST00000437564 MYH16Q9H6N6 1097 aa8.11□□□□□ -1.11
MCF2-205ENST00000437564 CALCOCO1Q9P1Z2 691 aa8.11□□□□□ -1.11
MCF2-205ENST00000437564 FEZ2Q9UHY8 353 aaPredicted RBP8.11□□□□□ -1.11
MCF2-205ENST00000437564 ZNF853P0CG23 659 aa8.11□□□□□ -1.11
MCF2-205ENST00000437564 PAIP2Q9BPZ3 127 aaKnown RBP8.11□□□□□ -1.11
MCF2-205ENST00000437564 NBPF3Q9H094 633 aa8.11□□□□□ -1.11
MCF2-205ENST00000437564 DONSONQ9NYP3 566 aa8.11□□□□□ -1.11
MCF2-205ENST00000437564 TRIM6-TRIM34B2RNG4 842 aa8.1□□□□□ -1.11
MCF2-205ENST00000437564 CT47A1Q5JQC4 288 aaPredicted RBP8.1□□□□□ -1.11
MCF2-205ENST00000437564 TRIM34Q9BYJ4 488 aa8.1□□□□□ -1.11
MCF2-205ENST00000437564 KDM4AO75164 1064 aa8.1□□□□□ -1.11
MCF2-205ENST00000437564 GABPB1Q06547 395 aaPredicted RBP8.1□□□□□ -1.11
MCF2-205ENST00000437564 CSPP1Q1MSJ5 1256 aa8.1□□□□□ -1.11
MCF2-205ENST00000437564 SPTY2D1Q68D10 685 aaPredicted RBP8.1□□□□□ -1.11
MCF2-205ENST00000437564 CHMP4CQ96CF2 233 aa8.1□□□□□ -1.11
MCF2-205ENST00000437564 KIF3CO14782 793 aa8.09□□□□□ -1.11
MCF2-205ENST00000437564 FRAT2O75474 233 aaPredicted RBP8.09□□□□□ -1.11
MCF2-205ENST00000437564 ZNF513Q8N8E2 541 aaPredicted RBP8.09□□□□□ -1.11
MCF2-205ENST00000437564 GTF2A1P52655 376 aaPredicted RBP8.08□□□□□ -1.12
MCF2-205ENST00000437564 MYBPC2Q14324 1141 aa8.08□□□□□ -1.12
MCF2-205ENST00000437564 LMOD2Q6P5Q4 547 aa8.08□□□□□ -1.12
MCF2-205ENST00000437564 SIRT1Q96EB6 747 aa8.08□□□□□ -1.12
MCF2-205ENST00000437564 SGSM3Q96HU1 749 aa8.08□□□□□ -1.12
MCF2-205ENST00000437564 SGIP1Q9BQI5 828 aa8.08□□□□□ -1.12
MCF2-205ENST00000437564 BACH2Q9BYV9 841 aa8.08□□□□□ -1.12
MCF2-205ENST00000437564 NUB1Q9Y5A7 615 aa8.08□□□□□ -1.12
MCF2-205ENST00000437564 UQCRHLA0A096LP55 91 aa8.08□□□□□ -1.12
MCF2-205ENST00000437564 UQCRHP07919 91 aa8.08□□□□□ -1.12
MCF2-205ENST00000437564 TNNT3P45378 269 aaPredicted RBP8.08□□□□□ -1.12
MCF2-205ENST00000437564 TRIM52Q96A61 297 aa8.08□□□□□ -1.12
MCF2-205ENST00000437564 KNSTRNQ9Y448 316 aa8.08□□□□□ -1.12
MCF2-205ENST00000437564 RAD50Q92878 1312 aa8.08□□□□□ -1.12
MCF2-205ENST00000437564 ZNF771Q7L3S4 317 aaPredicted RBP8.07□□□□□ -1.12
MCF2-205ENST00000437564 ARMCX6Q7L4S7 300 aa8.07□□□□□ -1.12
MCF2-205ENST00000437564 ZSCAN30Q86W11 494 aa8.07□□□□□ -1.12
MCF2-205ENST00000437564 CREBRFQ8IUR6 639 aa8.07□□□□□ -1.12
MCF2-205ENST00000437564 MSL3Q8N5Y2 521 aaKnown RBP8.07□□□□□ -1.12
MCF2-205ENST00000437564 SLC26A8Q96RN1 970 aa8.07□□□□□ -1.12
MCF2-205ENST00000437564 MED4Q9NPJ6 270 aa8.07□□□□□ -1.12
MCF2-205ENST00000437564 RYDENQ9NUL5 291 aaKnown RBP8.07□□□□□ -1.12
MCF2-205ENST00000437564 CLEC11AQ9Y240 323 aa8.07□□□□□ -1.12
MCF2-205ENST00000437564 BAZ1BQ9UIG0 1483 aaKnown RBP8.07□□□□□ -1.12
MCF2-205ENST00000437564 POTEMA6NI47 508 aa8.06□□□□□ -1.12
MCF2-205ENST00000437564 NEFHP12036 1026 aa8.06□□□□□ -1.12
MCF2-205ENST00000437564 PDE4AP27815 886 aa8.06□□□□□ -1.12
MCF2-205ENST00000437564 KCNV2Q8TDN2 545 aa8.06□□□□□ -1.12
MCF2-205ENST00000437564 STK24Q9Y6E0 443 aa8.06□□□□□ -1.12
MCF2-205ENST00000437564 ZFP91-CNTFA0A0A6YYC7 529 aaPredicted RBP8.06□□□□□ -1.12
MCF2-205ENST00000437564 LIG1P18858 919 aa8.06□□□□□ -1.12
MCF2-205ENST00000437564 TDO2P48775 406 aa8.06□□□□□ -1.12
MCF2-205ENST00000437564 HS1BP3Q53T59 392 aa8.06□□□□□ -1.12
MCF2-205ENST00000437564 EP400NLQ6ZTU2 488 aa8.06□□□□□ -1.12
MCF2-205ENST00000437564 SDR16C5Q8N3Y7 309 aa8.06□□□□□ -1.12
MCF2-205ENST00000437564 WRNQ14191 1432 aaPredicted RBP eCLIP8.05□□□□□ -1.12
MCF2-205ENST00000437564 ERBB4Q15303 1308 aa8.05□□□□□ -1.12
MCF2-205ENST00000437564 PPP1R12AO14974 1030 aaPredicted RBP8.05□□□□□ -1.12
MCF2-205ENST00000437564 STK26Q9P289 416 aa8.05□□□□□ -1.12
MCF2-205ENST00000437564 KLHL33A6NCF5 533 aa8.04□□□□□ -1.12
MCF2-205ENST00000437564 TRDNQ13061 729 aa8.04□□□□□ -1.12
MCF2-205ENST00000437564 RGL3Q3MIN7 710 aa8.04□□□□□ -1.12
MCF2-205ENST00000437564 MPHOSPH10O00566 681 aaKnown RBP8.04□□□□□ -1.12
MCF2-205ENST00000437564 CTAGE5O15320 804 aa8.04□□□□□ -1.12
Retrieved 100 of 20,778 RNA–protein pairs in 27.5 ms