RNA–Protein interactions for RNA: ENST00000433271.6

TMEM248-205, Transcript of transmembrane protein 248, humanhuman

TSL 1 (best)

Gene TMEM248, Length 1,610 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TMEM248-205ENST00000433271 UBR1Q8IWV7 1749 aa37.77■■■■□ 3.64
TMEM248-205ENST00000433271 PPLO60437 1756 aa37.77■■■■□ 3.64
TMEM248-205ENST00000433271 NEXMIFQ5QGS0 1516 aa37.77■■■■□ 3.64
TMEM248-205ENST00000433271 VGFO15240 615 aaPredicted RBP37.73■■■■□ 3.63
TMEM248-205ENST00000433271 ZFYVE9O95405 1425 aa37.71■■■■□ 3.63
TMEM248-205ENST00000433271 ADGRF5Q8IZF2 1346 aa37.71■■■■□ 3.63
TMEM248-205ENST00000433271 CEP170BQ9Y4F5 1589 aaPredicted RBP37.7■■■■□ 3.63
TMEM248-205ENST00000433271 NRXN1Q9ULB1 1477 aa37.7■■■■□ 3.63
TMEM248-205ENST00000433271 THEMISQ8N1K5 641 aaPredicted RBP37.69■■■■□ 3.62
TMEM248-205ENST00000433271 RIMS2Q9UQ26 1411 aa37.68■■■■□ 3.62
TMEM248-205ENST00000433271 TMEM2Q9UHN6 1383 aa37.68■■■■□ 3.62
TMEM248-205ENST00000433271 HDGFP51858 240 aaKnown RBP37.66■■■■□ 3.62
TMEM248-205ENST00000433271 ZNF142P52746 1687 aaPredicted RBP37.66■■■■□ 3.62
TMEM248-205ENST00000433271 ABCF1Q8NE71 845 aaKnown RBP eCLIP37.65■■■■□ 3.62
TMEM248-205ENST00000433271 NUTM2DQ5VT03 806 aaPredicted RBP37.65■■■■□ 3.62
TMEM248-205ENST00000433271 RALGAPBQ86X10 1494 aa37.63■■■■□ 3.62
TMEM248-205ENST00000433271 PIK3C2GO75747 1445 aa37.61■■■■□ 3.61
TMEM248-205ENST00000433271 TRPM1Q7Z4N2 1603 aa37.6■■■■□ 3.61
TMEM248-205ENST00000433271 SLIT1O75093 1534 aa37.59■■■■□ 3.61
TMEM248-205ENST00000433271 ARHGAP23Q9P227 1491 aa37.58■■■■□ 3.61
TMEM248-205ENST00000433271 ROCK2O75116 1388 aaKnown RBP37.54■■■■□ 3.6
TMEM248-205ENST00000433271 EID1Q9Y6B2 187 aa37.54■■■■□ 3.6
TMEM248-205ENST00000433271 KIAA1210Q9ULL0 1709 aa37.53■■■■□ 3.6
TMEM248-205ENST00000433271 NBPF1Q3BBV0 1214 aa37.53■■■■□ 3.6
TMEM248-205ENST00000433271 C14orf93Q9H972 538 aaKnown RBP37.52■■■■□ 3.6
TMEM248-205ENST00000433271 GPRASP1Q5JY77 1395 aa37.51■■■■□ 3.6
TMEM248-205ENST00000433271 CFAP70Q5T0N1 1121 aa37.51■■■■□ 3.6
TMEM248-205ENST00000433271 TXNDC2Q86VQ3 553 aa37.51■■■■□ 3.6
TMEM248-205ENST00000433271 LTKP29376 864 aa37.5■■■■□ 3.59
TMEM248-205ENST00000433271 CARD11Q9BXL7 1154 aa37.49■■■■□ 3.59
TMEM248-205ENST00000433271 PLEKHG1Q9ULL1 1385 aa37.43■■■■□ 3.58
TMEM248-205ENST00000433271 SCAF11Q99590 1463 aaKnown RBP37.42■■■■□ 3.58
TMEM248-205ENST00000433271 LAMC1P11047 1609 aa37.42■■■■□ 3.58
TMEM248-205ENST00000433271 EIF4G2P78344 907 aaKnown RBP eCLIP37.41■■■■□ 3.58
TMEM248-205ENST00000433271 ANKLE2Q86XL3 938 aa37.41■■■■□ 3.58
TMEM248-205ENST00000433271 SETBP1Q9Y6X0 1596 aa37.4■■■■□ 3.58
TMEM248-205ENST00000433271 SENP3Q9H4L4 574 aaPredicted RBP37.39■■■■□ 3.58
TMEM248-205ENST00000433271 ALKQ9UM73 1620 aa37.38■■■■□ 3.57
TMEM248-205ENST00000433271 USP47Q96K76 1375 aa37.36■■■■□ 3.57
TMEM248-205ENST00000433271 NRXN3Q9Y4C0 1643 aa37.35■■■■□ 3.57
TMEM248-205ENST00000433271 BCANQ96GW7 911 aa37.35■■■■□ 3.57
TMEM248-205ENST00000433271 ADGRB1O14514 1584 aa37.34■■■■□ 3.57
TMEM248-205ENST00000433271 HSPA5P11021 654 aaKnown RBP37.34■■■■□ 3.57
TMEM248-205ENST00000433271 LMTK3Q96Q04 1460 aa37.32■■■■□ 3.57
TMEM248-205ENST00000433271 TMEM132EQ6IEE7 984 aa37.32■■■■□ 3.56
TMEM248-205ENST00000433271 ZNF316A6NFI3 1004 aaPredicted RBP37.3■■■■□ 3.56
TMEM248-205ENST00000433271 IQGAP1P46940 1657 aa37.3■■■■□ 3.56
TMEM248-205ENST00000433271 ADAMTS13Q76LX8 1427 aa37.28■■■■□ 3.56
TMEM248-205ENST00000433271 SETD1AO15047 1707 aaKnown RBP37.27■■■■□ 3.56
TMEM248-205ENST00000433271 MED14O60244 1454 aa37.26■■■■□ 3.55
TMEM248-205ENST00000433271 ASXL1Q8IXJ9 1541 aa37.25■■■■□ 3.55
TMEM248-205ENST00000433271 HIRIP3Q9BW71 556 aaPredicted RBP37.25■■■■□ 3.55
TMEM248-205ENST00000433271 TBX22Q9Y458 520 aa37.23■■■■□ 3.55
TMEM248-205ENST00000433271 HSPA2P54652 639 aa37.21■■■■□ 3.55
TMEM248-205ENST00000433271 POLR1AO95602 1720 aaPredicted RBP37.21■■■■□ 3.55
TMEM248-205ENST00000433271 METP08581 1390 aa37.21■■■■□ 3.55
TMEM248-205ENST00000433271 NCKAP5LQ9HCH0 1330 aa37.21■■■■□ 3.55
TMEM248-205ENST00000433271 ST20-MTHFSA0A0A6YYL1 179 aa37.21■■■■□ 3.55
TMEM248-205ENST00000433271 SLC26A8Q96RN1 970 aa37.21■■■■□ 3.55
TMEM248-205ENST00000433271 EIF3AQ14152 1382 aaKnown RBP37.2■■■■□ 3.55
TMEM248-205ENST00000433271 DIP2AQ14689 1571 aa37.2■■■■□ 3.54
TMEM248-205ENST00000433271 YTHDC2Q9H6S0 1430 aaKnown RBP37.19■■■■□ 3.54
TMEM248-205ENST00000433271 NPHP4O75161 1426 aaPredicted RBP37.18■■■■□ 3.54
TMEM248-205ENST00000433271 TRAK1Q9UPV9 953 aa37.17■■■■□ 3.54
TMEM248-205ENST00000433271 LRPPRCP42704 1394 aaKnown RBP37.14■■■■□ 3.54
TMEM248-205ENST00000433271 STK26Q9P289 416 aa37.14■■■■□ 3.54
TMEM248-205ENST00000433271 ABCC11Q96J66 1382 aa37.11■■■■□ 3.53
TMEM248-205ENST00000433271 PIK3R4Q99570 1358 aa37.08■■■■□ 3.53
TMEM248-205ENST00000433271 TESK2Q96S53 571 aa37.06■■■■□ 3.52
TMEM248-205ENST00000433271 CENPJQ9HC77 1338 aaPredicted RBP37.05■■■■□ 3.52
TMEM248-205ENST00000433271 DLC1Q96QB1 1528 aa37.04■■■■□ 3.52
TMEM248-205ENST00000433271 ARHGEF28Q8N1W1 1705 aaKnown RBP37.04■■■■□ 3.52
TMEM248-205ENST00000433271 TECPR2O15040 1411 aa37.03■■■■□ 3.52
TMEM248-205ENST00000433271 SIRT1Q96EB6 747 aa37.02■■■■□ 3.52
TMEM248-205ENST00000433271 PTPRUQ92729 1446 aa37.02■■■■□ 3.52
TMEM248-205ENST00000433271 SLC24A1O60721 1099 aa36.99■■■■□ 3.51
TMEM248-205ENST00000433271 STRCQ7RTU9 1775 aa36.99■■■■□ 3.51
TMEM248-205ENST00000433271 KNDC1Q76NI1 1749 aa36.99■■■■□ 3.51
TMEM248-205ENST00000433271 AMOTL2Q9Y2J4 779 aa36.99■■■■□ 3.51
TMEM248-205ENST00000433271 SBNO2Q9Y2G9 1366 aa36.98■■■■□ 3.51
TMEM248-205ENST00000433271 PRAM1Q96QH2 718 aa36.98■■■■□ 3.51
TMEM248-205ENST00000433271 C11orf95C9JLR9 678 aaPredicted RBP36.97■■■■□ 3.51
TMEM248-205ENST00000433271 POGKQ9P215 609 aa36.96■■■■□ 3.51
TMEM248-205ENST00000433271 FAM135BQ49AJ0 1406 aa36.95■■■■□ 3.51
TMEM248-205ENST00000433271 CPS1P31327 1500 aa36.95■■■■□ 3.51
TMEM248-205ENST00000433271 TMF1P82094 1093 aa36.93■■■■□ 3.5
TMEM248-205ENST00000433271 QRICH2Q9H0J4 1663 aa36.92■■■■□ 3.5
TMEM248-205ENST00000433271 WASHC2AQ641Q2 1341 aa36.92■■■■□ 3.5
TMEM248-205ENST00000433271 ROBO2Q9HCK4 1378 aa36.91■■■■□ 3.5
TMEM248-205ENST00000433271 WAPLQ7Z5K2 1190 aa36.91■■■■□ 3.5
TMEM248-205ENST00000433271 CHD2O14647 1828 aaKnown RBP36.91■■■■□ 3.5
TMEM248-205ENST00000433271 XRN1Q8IZH2 1706 aaKnown RBP36.91■■■■□ 3.5
TMEM248-205ENST00000433271 CCDC7Q96M83 1385 aa36.89■■■■□ 3.5
TMEM248-205ENST00000433271 PTCH1Q13635 1447 aa36.89■■■■□ 3.5
TMEM248-205ENST00000433271 KIF7Q2M1P5 1343 aa36.89■■■■□ 3.5
TMEM248-205ENST00000433271 SAFB2Q14151 953 aaKnown RBP eCLIP36.88■■■■□ 3.5
TMEM248-205ENST00000433271 DISP3Q9P2K9 1392 aa36.87■■■■□ 3.49
TMEM248-205ENST00000433271 PLEKHH1Q9ULM0 1364 aa36.87■■■■□ 3.49
TMEM248-205ENST00000433271 KCNA6P17658 529 aa36.87■■■■□ 3.49
TMEM248-205ENST00000433271 CDCA8Q53HL2 280 aa36.83■■■■□ 3.49
Retrieved 100 of 20,778 RNA–protein pairs in 25 ms