RNA–Protein interactions for RNA: ENST00000431640.5

DDX56-204, Transcript of DEAD-box helicase 56, humanhuman

TSL 1 (best) BASIC

Gene DDX56, Length 1,554 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
DDX56-204ENST00000431640 DCAF11Q8TEB1 546 aa17.75■□□□□ 0.43
DDX56-204ENST00000431640 TNRQ92752 1358 aa17.75■□□□□ 0.43
DDX56-204ENST00000431640 USP47Q96K76 1375 aa17.75■□□□□ 0.43
DDX56-204ENST00000431640 KIF7Q2M1P5 1343 aa17.74■□□□□ 0.43
DDX56-204ENST00000431640 KDM4FA0A1W2PPD8 638 aa17.74■□□□□ 0.43
DDX56-204ENST00000431640 UBR1Q8IWV7 1749 aa17.73■□□□□ 0.43
DDX56-204ENST00000431640 IDI1Q13907 227 aa17.73■□□□□ 0.43
DDX56-204ENST00000431640 PLPPR3Q6T4P5 718 aa17.73■□□□□ 0.43
DDX56-204ENST00000431640 CARD11Q9BXL7 1154 aa17.73■□□□□ 0.43
DDX56-204ENST00000431640 KDM2AQ9Y2K7 1162 aa17.72■□□□□ 0.43
DDX56-204ENST00000431640 PPLO60437 1756 aa17.72■□□□□ 0.43
DDX56-204ENST00000431640 NEXMIFQ5QGS0 1516 aa17.71■□□□□ 0.43
DDX56-204ENST00000431640 ZNF142P52746 1687 aaPredicted RBP17.7■□□□□ 0.42
DDX56-204ENST00000431640 A2ML1A8K2U0 1454 aa17.7■□□□□ 0.42
DDX56-204ENST00000431640 ROCK2O75116 1388 aaKnown RBP17.69■□□□□ 0.42
DDX56-204ENST00000431640 KDM5AP29375 1690 aaKnown RBP17.69■□□□□ 0.42
DDX56-204ENST00000431640 RGL3Q3MIN7 710 aa17.68■□□□□ 0.42
DDX56-204ENST00000431640 NLRP1Q9C000 1473 aa17.68■□□□□ 0.42
DDX56-204ENST00000431640 CEP170BQ9Y4F5 1589 aaPredicted RBP17.67■□□□□ 0.42
DDX56-204ENST00000431640 STAC3Q96MF2 364 aa17.67■□□□□ 0.42
DDX56-204ENST00000431640 PRKRIP1Q9H875 184 aaPredicted RBP17.67■□□□□ 0.42
DDX56-204ENST00000431640 SLC52A1Q9NWF4 448 aa17.66■□□□□ 0.42
DDX56-204ENST00000431640 PRAG1Q86YV5 1406 aa17.66■□□□□ 0.42
DDX56-204ENST00000431640 MYOM2P54296 1465 aa17.64■□□□□ 0.41
DDX56-204ENST00000431640 CHGAP10645 457 aaKnown RBP17.63■□□□□ 0.41
DDX56-204ENST00000431640 ZFYVE9O95405 1425 aa17.63■□□□□ 0.41
DDX56-204ENST00000431640 NRXN1Q9ULB1 1477 aa17.63■□□□□ 0.41
DDX56-204ENST00000431640 TRPM1Q7Z4N2 1603 aa17.63■□□□□ 0.41
DDX56-204ENST00000431640 GPRASP1Q5JY77 1395 aa17.61■□□□□ 0.41
DDX56-204ENST00000431640 LAMC1P11047 1609 aa17.61■□□□□ 0.41
DDX56-204ENST00000431640 ST20-MTHFSA0A0A6YYL1 179 aa17.6■□□□□ 0.41
DDX56-204ENST00000431640 PELP1Q8IZL8 1130 aaKnown RBP17.6■□□□□ 0.41
DDX56-204ENST00000431640 ADGRF5Q8IZF2 1346 aa17.59■□□□□ 0.41
DDX56-204ENST00000431640 ARHGAP23Q9P227 1491 aa17.58■□□□□ 0.41
DDX56-204ENST00000431640 SLIT1O75093 1534 aa17.58■□□□□ 0.41
DDX56-204ENST00000431640 NRXN3Q9Y4C0 1643 aa17.58■□□□□ 0.41
DDX56-204ENST00000431640 RIMS2Q9UQ26 1411 aa17.57■□□□□ 0.4
DDX56-204ENST00000431640 NUTM2DQ5VT03 806 aaPredicted RBP17.57■□□□□ 0.4
DDX56-204ENST00000431640 PIK3C2GO75747 1445 aa17.56■□□□□ 0.4
DDX56-204ENST00000431640 SETD1AO15047 1707 aaKnown RBP17.56■□□□□ 0.4
DDX56-204ENST00000431640 SETD1BQ9UPS6 1966 aaKnown RBP17.56■□□□□ 0.4
DDX56-204ENST00000431640 SUPT16HQ9Y5B9 1047 aaKnown RBP17.56■□□□□ 0.4
DDX56-204ENST00000431640 IQGAP1P46940 1657 aa17.56■□□□□ 0.4
DDX56-204ENST00000431640 POLR3GLQ9BT43 218 aa17.55■□□□□ 0.4
DDX56-204ENST00000431640 MRS2Q9HD23 443 aa17.55■□□□□ 0.4
DDX56-204ENST00000431640 TMEM2Q9UHN6 1383 aa17.55■□□□□ 0.4
DDX56-204ENST00000431640 ASXL1Q8IXJ9 1541 aa17.54■□□□□ 0.4
DDX56-204ENST00000431640 KTN1Q86UP2 1357 aaKnown RBP17.54■□□□□ 0.4
DDX56-204ENST00000431640 HNRNPUQ00839 825 aaKnown RBP eCLIP17.54■□□□□ 0.4
DDX56-204ENST00000431640 KIAA1210Q9ULL0 1709 aa17.53■□□□□ 0.4
DDX56-204ENST00000431640 LMTK3Q96Q04 1460 aa17.52■□□□□ 0.4
DDX56-204ENST00000431640 RPGRIP1LQ68CZ1 1315 aa17.52■□□□□ 0.4
DDX56-204ENST00000431640 NBPF1Q3BBV0 1214 aa17.52■□□□□ 0.39
DDX56-204ENST00000431640 STAG3Q9UJ98 1225 aa17.52■□□□□ 0.39
DDX56-204ENST00000431640 ADGRB1O14514 1584 aa17.5■□□□□ 0.39
DDX56-204ENST00000431640 NEFLP07196 543 aa17.5■□□□□ 0.39
DDX56-204ENST00000431640 SETBP1Q9Y6X0 1596 aa17.5■□□□□ 0.39
DDX56-204ENST00000431640 LTKP29376 864 aa17.49■□□□□ 0.39
DDX56-204ENST00000431640 SENP3Q9H4L4 574 aaPredicted RBP17.49■□□□□ 0.39
DDX56-204ENST00000431640 ALKQ9UM73 1620 aa17.48■□□□□ 0.39
DDX56-204ENST00000431640 RALBP1Q15311 655 aa17.48■□□□□ 0.39
DDX56-204ENST00000431640 CCDC184Q52MB2 194 aa17.48■□□□□ 0.39
DDX56-204ENST00000431640 SCAF11Q99590 1463 aaKnown RBP17.47■□□□□ 0.39
DDX56-204ENST00000431640 TMF1P82094 1093 aa17.46■□□□□ 0.39
DDX56-204ENST00000431640 FAM9BQ8IZU0 186 aa17.46■□□□□ 0.39
DDX56-204ENST00000431640 SLC24A1O60721 1099 aa17.45■□□□□ 0.38
DDX56-204ENST00000431640 CFAP70Q5T0N1 1121 aa17.45■□□□□ 0.38
DDX56-204ENST00000431640 ADAMTS13Q76LX8 1427 aa17.45■□□□□ 0.38
DDX56-204ENST00000431640 PLEKHG1Q9ULL1 1385 aa17.44■□□□□ 0.38
DDX56-204ENST00000431640 VGFO15240 615 aaPredicted RBP17.44■□□□□ 0.38
DDX56-204ENST00000431640 TESK2Q96S53 571 aa17.44■□□□□ 0.38
DDX56-204ENST00000431640 MED14O60244 1454 aa17.43■□□□□ 0.38
DDX56-204ENST00000431640 THEMISQ8N1K5 641 aaPredicted RBP17.43■□□□□ 0.38
DDX56-204ENST00000431640 ZBED9Q6R2W3 1325 aa17.43■□□□□ 0.38
DDX56-204ENST00000431640 FKBP8Q14318 412 aa17.41■□□□□ 0.38
DDX56-204ENST00000431640 CDCA8Q53HL2 280 aa17.41■□□□□ 0.38
DDX56-204ENST00000431640 STRCQ7RTU9 1775 aa17.41■□□□□ 0.38
DDX56-204ENST00000431640 HSPA2P54652 639 aa17.4■□□□□ 0.38
DDX56-204ENST00000431640 TXNDC2Q86VQ3 553 aa17.4■□□□□ 0.38
DDX56-204ENST00000431640 TMC1Q8TDI8 760 aa17.4■□□□□ 0.38
DDX56-204ENST00000431640 C14orf93Q9H972 538 aaKnown RBP17.4■□□□□ 0.38
DDX56-204ENST00000431640 MYBBP1AQ9BQG0 1328 aaKnown RBP17.4■□□□□ 0.38
DDX56-204ENST00000431640 ABCF1Q8NE71 845 aaKnown RBP eCLIP17.4■□□□□ 0.38
DDX56-204ENST00000431640 ARHGEF28Q8N1W1 1705 aaKnown RBP17.39■□□□□ 0.38
DDX56-204ENST00000431640 BRD4O60885 1362 aaPredicted RBP17.39■□□□□ 0.37
DDX56-204ENST00000431640 DIP2AQ14689 1571 aa17.38■□□□□ 0.37
DDX56-204ENST00000431640 METP08581 1390 aa17.38■□□□□ 0.37
DDX56-204ENST00000431640 EIF3AQ14152 1382 aaKnown RBP17.38■□□□□ 0.37
DDX56-204ENST00000431640 TMEM132EQ6IEE7 984 aa17.37■□□□□ 0.37
DDX56-204ENST00000431640 PER1O15534 1290 aaPredicted RBP17.36■□□□□ 0.37
DDX56-204ENST00000431640 PNISRQ8TF01 805 aaKnown RBP17.36■□□□□ 0.37
DDX56-204ENST00000431640 DISP3Q9P2K9 1392 aa17.36■□□□□ 0.37
DDX56-204ENST00000431640 KNDC1Q76NI1 1749 aa17.36■□□□□ 0.37
DDX56-204ENST00000431640 NCKAP5LQ9HCH0 1330 aa17.36■□□□□ 0.37
DDX56-204ENST00000431640 PTPRUQ92729 1446 aa17.35■□□□□ 0.37
DDX56-204ENST00000431640 EID1Q9Y6B2 187 aa17.35■□□□□ 0.37
DDX56-204ENST00000431640 NPHP4O75161 1426 aaPredicted RBP17.35■□□□□ 0.37
DDX56-204ENST00000431640 XRN1Q8IZH2 1706 aaKnown RBP17.34■□□□□ 0.37
DDX56-204ENST00000431640 YTHDC2Q9H6S0 1430 aaKnown RBP17.33■□□□□ 0.37
DDX56-204ENST00000431640 PARD3Q8TEW0 1356 aa17.33■□□□□ 0.37
Retrieved 100 of 20,778 RNA–protein pairs in 73 ms