RNA–Protein interactions for RNA: ENST00000431146.6

USHBP1-203, Transcript of USH1 protein network component harmonin binding protein 1, humanhuman

TSL 2 BASIC

Gene USHBP1, Length 2,136 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USHBP1-203ENST00000431146 DISP3Q9P2K9 1392 aa22.99■■□□□ 1.27
USHBP1-203ENST00000431146 CFAP70Q5T0N1 1121 aa22.99■■□□□ 1.27
USHBP1-203ENST00000431146 ARHGAP31Q2M1Z3 1444 aa22.98■■□□□ 1.27
USHBP1-203ENST00000431146 PIK3C2BO00750 1634 aa22.96■■□□□ 1.27
USHBP1-203ENST00000431146 KIAA1210Q9ULL0 1709 aa22.96■■□□□ 1.27
USHBP1-203ENST00000431146 PPLO60437 1756 aa22.96■■□□□ 1.27
USHBP1-203ENST00000431146 MLECQ14165 292 aa22.95■■□□□ 1.26
USHBP1-203ENST00000431146 REREQ9P2R6 1566 aa22.95■■□□□ 1.26
USHBP1-203ENST00000431146 PREX1Q8TCU6 1659 aa22.94■■□□□ 1.26
USHBP1-203ENST00000431146 SCAF11Q99590 1463 aaKnown RBP22.94■■□□□ 1.26
USHBP1-203ENST00000431146 NUTM2DQ5VT03 806 aaPredicted RBP22.93■■□□□ 1.26
USHBP1-203ENST00000431146 IDI1Q13907 227 aa22.93■■□□□ 1.26
USHBP1-203ENST00000431146 FBXO31Q5XUX0 539 aaPredicted RBP22.93■■□□□ 1.26
USHBP1-203ENST00000431146 ARHGEF40Q8TER5 1519 aa22.92■■□□□ 1.26
USHBP1-203ENST00000431146 AGLP35573 1532 aa22.92■■□□□ 1.26
USHBP1-203ENST00000431146 NRXN1Q9ULB1 1477 aa22.92■■□□□ 1.26
USHBP1-203ENST00000431146 TMF1P82094 1093 aa22.91■■□□□ 1.26
USHBP1-203ENST00000431146 CLTCQ00610 1675 aaKnown RBP22.9■■□□□ 1.26
USHBP1-203ENST00000431146 MYO5BQ9ULV0 1848 aa22.9■■□□□ 1.26
USHBP1-203ENST00000431146 MRS2Q9HD23 443 aa22.88■■□□□ 1.25
USHBP1-203ENST00000431146 PIK3C2GO75747 1445 aa22.86■■□□□ 1.25
USHBP1-203ENST00000431146 SENP3Q9H4L4 574 aaPredicted RBP22.86■■□□□ 1.25
USHBP1-203ENST00000431146 RPGRIP1LQ68CZ1 1315 aa22.85■■□□□ 1.25
USHBP1-203ENST00000431146 SLC52A1Q9NWF4 448 aa22.85■■□□□ 1.25
USHBP1-203ENST00000431146 NEXMIFQ5QGS0 1516 aa22.84■■□□□ 1.25
USHBP1-203ENST00000431146 EIF3AQ14152 1382 aaKnown RBP22.84■■□□□ 1.25
USHBP1-203ENST00000431146 FAM9BQ8IZU0 186 aa22.84■■□□□ 1.25
USHBP1-203ENST00000431146 ERVK-7P63135 1459 aa22.84■■□□□ 1.25
USHBP1-203ENST00000431146 TMEM132EQ6IEE7 984 aa22.82■■□□□ 1.24
USHBP1-203ENST00000431146 TMEM131LA2VDJ0 1609 aa22.81■■□□□ 1.24
USHBP1-203ENST00000431146 HNRNPUQ00839 825 aaKnown RBP eCLIP22.81■■□□□ 1.24
USHBP1-203ENST00000431146 C14orf93Q9H972 538 aaKnown RBP22.81■■□□□ 1.24
USHBP1-203ENST00000431146 PPP6R1Q9UPN7 881 aa22.81■■□□□ 1.24
USHBP1-203ENST00000431146 PANK3Q9H999 370 aa22.8■■□□□ 1.24
USHBP1-203ENST00000431146 SETBP1Q9Y6X0 1596 aa22.78■■□□□ 1.24
USHBP1-203ENST00000431146 VGFO15240 615 aaPredicted RBP22.78■■□□□ 1.24
USHBP1-203ENST00000431146 PER1O15534 1290 aaPredicted RBP22.78■■□□□ 1.24
USHBP1-203ENST00000431146 TRAK1Q9UPV9 953 aa22.78■■□□□ 1.24
USHBP1-203ENST00000431146 TRHP20396 242 aaPredicted RBP22.77■■□□□ 1.24
USHBP1-203ENST00000431146 ADGRB1O14514 1584 aa22.77■■□□□ 1.23
USHBP1-203ENST00000431146 ESF1Q9H501 851 aaKnown RBP22.74■■□□□ 1.23
USHBP1-203ENST00000431146 STAG3Q9UJ98 1225 aa22.74■■□□□ 1.23
USHBP1-203ENST00000431146 CC2D1BQ5T0F9 858 aaKnown RBP22.73■■□□□ 1.23
USHBP1-203ENST00000431146 MYO3AQ8NEV4 1616 aa22.72■■□□□ 1.23
USHBP1-203ENST00000431146 SPATA31D1Q6ZQQ2 1576 aa22.72■■□□□ 1.23
USHBP1-203ENST00000431146 KDM5AP29375 1690 aaKnown RBP22.72■■□□□ 1.23
USHBP1-203ENST00000431146 MYOM1P52179 1685 aa22.72■■□□□ 1.23
USHBP1-203ENST00000431146 KTN1Q86UP2 1357 aaKnown RBP22.72■■□□□ 1.23
USHBP1-203ENST00000431146 CDCA8Q53HL2 280 aa22.72■■□□□ 1.23
USHBP1-203ENST00000431146 CENPJQ9HC77 1338 aaPredicted RBP22.71■■□□□ 1.23
USHBP1-203ENST00000431146 RALBP1Q15311 655 aa22.7■■□□□ 1.23
USHBP1-203ENST00000431146 ZMYM3Q14202 1370 aa22.7■■□□□ 1.22
USHBP1-203ENST00000431146 MYBBP1AQ9BQG0 1328 aaKnown RBP22.7■■□□□ 1.22
USHBP1-203ENST00000431146 QRICH2Q9H0J4 1663 aa22.69■■□□□ 1.22
USHBP1-203ENST00000431146 TMC1Q8TDI8 760 aa22.69■■□□□ 1.22
USHBP1-203ENST00000431146 PARD3Q8TEW0 1356 aa22.68■■□□□ 1.22
USHBP1-203ENST00000431146 ZFYVE9O95405 1425 aa22.68■■□□□ 1.22
USHBP1-203ENST00000431146 A2ML1A8K2U0 1454 aa22.65■■□□□ 1.22
USHBP1-203ENST00000431146 ASXL1Q8IXJ9 1541 aa22.64■■□□□ 1.22
USHBP1-203ENST00000431146 ARHGEF28Q8N1W1 1705 aaKnown RBP22.64■■□□□ 1.22
USHBP1-203ENST00000431146 STK26Q9P289 416 aa22.64■■□□□ 1.21
USHBP1-203ENST00000431146 SBNO2Q9Y2G9 1366 aa22.63■■□□□ 1.21
USHBP1-203ENST00000431146 KNSTRNQ9Y448 316 aa22.63■■□□□ 1.21
USHBP1-203ENST00000431146 BRD4O60885 1362 aaPredicted RBP22.62■■□□□ 1.21
USHBP1-203ENST00000431146 PNISRQ8TF01 805 aaKnown RBP22.62■■□□□ 1.21
USHBP1-203ENST00000431146 SAFB2Q14151 953 aaKnown RBP eCLIP22.61■■□□□ 1.21
USHBP1-203ENST00000431146 SENP3-EIF4A1A0A087X0R7 540 aa22.61■■□□□ 1.21
USHBP1-203ENST00000431146 SLC24A1O60721 1099 aa22.61■■□□□ 1.21
USHBP1-203ENST00000431146 NLRP13Q86W25 1043 aa22.59■■□□□ 1.21
USHBP1-203ENST00000431146 RIMS2Q9UQ26 1411 aa22.58■■□□□ 1.21
USHBP1-203ENST00000431146 ALKQ9UM73 1620 aa22.58■■□□□ 1.2
USHBP1-203ENST00000431146 AMER1Q5JTC6 1135 aaPredicted RBP22.57■■□□□ 1.2
USHBP1-203ENST00000431146 TNRQ92752 1358 aa22.56■■□□□ 1.2
USHBP1-203ENST00000431146 CEBPAP49715 358 aaPredicted RBP22.56■■□□□ 1.2
USHBP1-203ENST00000431146 PLPPR3Q6T4P5 718 aa22.55■■□□□ 1.2
USHBP1-203ENST00000431146 ZBED9Q6R2W3 1325 aa22.55■■□□□ 1.2
USHBP1-203ENST00000431146 YTHDC2Q9H6S0 1430 aaKnown RBP22.53■■□□□ 1.2
USHBP1-203ENST00000431146 CARD14Q9BXL6 1004 aa22.53■■□□□ 1.2
USHBP1-203ENST00000431146 SUPT16HQ9Y5B9 1047 aaKnown RBP22.53■■□□□ 1.2
USHBP1-203ENST00000431146 TULP4Q9NRJ4 1543 aa22.53■■□□□ 1.2
USHBP1-203ENST00000431146 SLC12A5Q9H2X9 1139 aa22.51■■□□□ 1.19
USHBP1-203ENST00000431146 LRPPRCP42704 1394 aaKnown RBP22.51■■□□□ 1.19
USHBP1-203ENST00000431146 PTPRMP28827 1452 aa22.51■■□□□ 1.19
USHBP1-203ENST00000431146 PRAM1Q96QH2 718 aa22.51■■□□□ 1.19
USHBP1-203ENST00000431146 EVC2Q86UK5 1308 aa22.49■■□□□ 1.19
USHBP1-203ENST00000431146 CABP2Q9NPB3 220 aa22.49■■□□□ 1.19
USHBP1-203ENST00000431146 UBR1Q8IWV7 1749 aa22.48■■□□□ 1.19
USHBP1-203ENST00000431146 SETD1AO15047 1707 aaKnown RBP22.48■■□□□ 1.19
USHBP1-203ENST00000431146 MINK1Q8N4C8 1332 aaPredicted RBP22.48■■□□□ 1.19
USHBP1-203ENST00000431146 POGKQ9P215 609 aa22.48■■□□□ 1.19
USHBP1-203ENST00000431146 FER1L4A9Z1Z3 1794 aa22.48■■□□□ 1.19
USHBP1-203ENST00000431146 PPP2R1AP30153 589 aa22.47■■□□□ 1.19
USHBP1-203ENST00000431146 C3P01024 1663 aa22.47■■□□□ 1.19
USHBP1-203ENST00000431146 NRXN3Q9Y4C0 1643 aa22.47■■□□□ 1.19
USHBP1-203ENST00000431146 FKBP8Q14318 412 aa22.46■■□□□ 1.19
USHBP1-203ENST00000431146 ABCF1Q8NE71 845 aaKnown RBP eCLIP22.45■■□□□ 1.18
USHBP1-203ENST00000431146 NSD3Q9BZ95 1437 aa22.43■■□□□ 1.18
USHBP1-203ENST00000431146 NPC1L1Q9UHC9 1359 aa22.43■■□□□ 1.18
USHBP1-203ENST00000431146 SRPK2P78362 688 aaKnown RBP22.42■■□□□ 1.18
USHBP1-203ENST00000431146 BCANQ96GW7 911 aa22.42■■□□□ 1.18
Retrieved 100 of 20,778 RNA–protein pairs in 21.7 ms