RNA–Protein interactions for RNA: ENST00000430454.5

HDAC9-211, Transcript of histone deacetylase 9, humanhuman

TSL 4

Gene HDAC9, Length 545 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC9-211ENST00000430454 RIMS2Q9UQ26 1411 aa13.71□□□□□ -0.22
HDAC9-211ENST00000430454 PLEKHG1Q9ULL1 1385 aa13.71□□□□□ -0.22
HDAC9-211ENST00000430454 E9PCH4 1651 aa13.69□□□□□ -0.22
HDAC9-211ENST00000430454 PROSER2Q86WR7 435 aaPredicted RBP13.69□□□□□ -0.22
HDAC9-211ENST00000430454 TRIM52Q96A61 297 aa13.69□□□□□ -0.22
HDAC9-211ENST00000430454 TBX22Q9Y458 520 aa13.68□□□□□ -0.22
HDAC9-211ENST00000430454 TMEM131LA2VDJ0 1609 aa13.68□□□□□ -0.22
HDAC9-211ENST00000430454 HFM1A2PYH4 1435 aa13.67□□□□□ -0.22
HDAC9-211ENST00000430454 ZFYVE9O95405 1425 aa13.67□□□□□ -0.22
HDAC9-211ENST00000430454 NAIPQ13075 1403 aa13.67□□□□□ -0.22
HDAC9-211ENST00000430454 HSPA1LP34931 641 aa13.67□□□□□ -0.22
HDAC9-211ENST00000430454 ZNF326Q5BKZ1 582 aaKnown RBP13.66□□□□□ -0.22
HDAC9-211ENST00000430454 NKTRP30414 1462 aaKnown RBP13.66□□□□□ -0.22
HDAC9-211ENST00000430454 TMEM94Q12767 1356 aa13.65□□□□□ -0.22
HDAC9-211ENST00000430454 STRCP1A6NGW2 1772 aa13.64□□□□□ -0.23
HDAC9-211ENST00000430454 PIK3R4Q99570 1358 aa13.64□□□□□ -0.23
HDAC9-211ENST00000430454 MSH6P52701 1360 aa13.63□□□□□ -0.23
HDAC9-211ENST00000430454 SLC4A1APQ9BWU0 796 aaKnown RBP13.63□□□□□ -0.23
HDAC9-211ENST00000430454 DIP2AQ14689 1571 aa13.62□□□□□ -0.23
HDAC9-211ENST00000430454 C14orf37Q86TY3 774 aa13.62□□□□□ -0.23
HDAC9-211ENST00000430454 SPHKAPQ2M3C7 1700 aa13.61□□□□□ -0.23
HDAC9-211ENST00000430454 NUTM2DQ5VT03 806 aaPredicted RBP13.61□□□□□ -0.23
HDAC9-211ENST00000430454 NCOA3Q9Y6Q9 1424 aa13.61□□□□□ -0.23
HDAC9-211ENST00000430454 NWD1Q149M9 1564 aa13.61□□□□□ -0.23
HDAC9-211ENST00000430454 MYO5BQ9ULV0 1848 aa13.6□□□□□ -0.23
HDAC9-211ENST00000430454 SENP3Q9H4L4 574 aaPredicted RBP13.6□□□□□ -0.23
HDAC9-211ENST00000430454 TRPM2O94759 1503 aa13.59□□□□□ -0.23
HDAC9-211ENST00000430454 FAM135BQ49AJ0 1406 aa13.59□□□□□ -0.23
HDAC9-211ENST00000430454 VGFO15240 615 aaPredicted RBP13.58□□□□□ -0.24
HDAC9-211ENST00000430454 RPGRIP1LQ68CZ1 1315 aa13.58□□□□□ -0.24
HDAC9-211ENST00000430454 ATF3P18847 181 aa13.57□□□□□ -0.24
HDAC9-211ENST00000430454 PHF23Q9BUL5 403 aaPredicted RBP13.57□□□□□ -0.24
HDAC9-211ENST00000430454 ADAMTS13Q76LX8 1427 aa13.56□□□□□ -0.24
HDAC9-211ENST00000430454 CHD2O14647 1828 aaKnown RBP13.56□□□□□ -0.24
HDAC9-211ENST00000430454 CADPS2Q86UW7 1296 aa13.56□□□□□ -0.24
HDAC9-211ENST00000430454 C19orf44Q9H6X5 657 aa13.56□□□□□ -0.24
HDAC9-211ENST00000430454 SLAIN2Q9P270 581 aa13.56□□□□□ -0.24
HDAC9-211ENST00000430454 AMOTL2Q9Y2J4 779 aa13.56□□□□□ -0.24
HDAC9-211ENST00000430454 ALKQ9UM73 1620 aa13.55□□□□□ -0.24
HDAC9-211ENST00000430454 RBM33Q96EV2 1170 aaKnown RBP13.54□□□□□ -0.24
HDAC9-211ENST00000430454 KIF1BO60333 1816 aa13.54□□□□□ -0.24
HDAC9-211ENST00000430454 XIRP1Q702N8 1843 aaKnown RBP13.54□□□□□ -0.24
HDAC9-211ENST00000430454 SETBP1Q9Y6X0 1596 aa13.54□□□□□ -0.24
HDAC9-211ENST00000430454 MPHOSPH9Q99550 1183 aa13.53□□□□□ -0.24
HDAC9-211ENST00000430454 CLTCL1P53675 1640 aa13.53□□□□□ -0.24
HDAC9-211ENST00000430454 CCDC144AA2RUR9 1427 aa13.52□□□□□ -0.25
HDAC9-211ENST00000430454 SETD5Q9C0A6 1442 aa13.51□□□□□ -0.25
HDAC9-211ENST00000430454 SOCS7O14512 581 aa13.51□□□□□ -0.25
HDAC9-211ENST00000430454 MED1Q15648 1581 aaPredicted RBP13.5□□□□□ -0.25
HDAC9-211ENST00000430454 NEXMIFQ5QGS0 1516 aa13.49□□□□□ -0.25
HDAC9-211ENST00000430454 ILDR2Q71H61 639 aa13.49□□□□□ -0.25
HDAC9-211ENST00000430454 DCCP43146 1447 aa13.48□□□□□ -0.25
HDAC9-211ENST00000430454 ROBO1Q9Y6N7 1651 aa13.48□□□□□ -0.25
HDAC9-211ENST00000430454 METP08581 1390 aa13.46□□□□□ -0.25
HDAC9-211ENST00000430454 ANKRD30BQ9BXX2 1392 aa13.46□□□□□ -0.25
HDAC9-211ENST00000430454 FOXD1Q16676 465 aa13.46□□□□□ -0.25
HDAC9-211ENST00000430454 PTPRUQ92729 1446 aa13.46□□□□□ -0.26
HDAC9-211ENST00000430454 JCADQ9P266 1359 aa13.45□□□□□ -0.26
HDAC9-211ENST00000430454 NRXN3Q9Y4C0 1643 aa13.45□□□□□ -0.26
HDAC9-211ENST00000430454 RGL3Q3MIN7 710 aa13.44□□□□□ -0.26
HDAC9-211ENST00000430454 XRN1Q8IZH2 1706 aaKnown RBP13.44□□□□□ -0.26
HDAC9-211ENST00000430454 SIPA1L2Q9P2F8 1722 aaPredicted RBP13.44□□□□□ -0.26
HDAC9-211ENST00000430454 HRCP23327 699 aa13.43□□□□□ -0.26
HDAC9-211ENST00000430454 PHLPP1O60346 1717 aa13.42□□□□□ -0.26
HDAC9-211ENST00000430454 PTCH1Q13635 1447 aa13.42□□□□□ -0.26
HDAC9-211ENST00000430454 ADGRL3Q9HAR2 1447 aa13.42□□□□□ -0.26
HDAC9-211ENST00000430454 RAB3GAP2Q9H2M9 1393 aa13.42□□□□□ -0.26
HDAC9-211ENST00000430454 SPATA31A6Q5VVP1 1343 aa13.41□□□□□ -0.26
HDAC9-211ENST00000430454 SPATA31E1Q6ZUB1 1445 aa13.4□□□□□ -0.26
HDAC9-211ENST00000430454 BRINP3Q76B58 766 aa13.4□□□□□ -0.26
HDAC9-211ENST00000430454 PPLO60437 1756 aa13.4□□□□□ -0.26
HDAC9-211ENST00000430454 PRAG1Q86YV5 1406 aa13.39□□□□□ -0.27
HDAC9-211ENST00000430454 MEX3CQ5U5Q3 659 aaKnown RBP13.39□□□□□ -0.27
HDAC9-211ENST00000430454 LRRC59Q96AG4 307 aaKnown RBP13.38□□□□□ -0.27
HDAC9-211ENST00000430454 AHDC1Q5TGY3 1603 aaPredicted RBP13.38□□□□□ -0.27
HDAC9-211ENST00000430454 MST1RQ04912 1400 aa13.38□□□□□ -0.27
HDAC9-211ENST00000430454 ADGRF5Q8IZF2 1346 aa13.38□□□□□ -0.27
HDAC9-211ENST00000430454 STAC3Q96MF2 364 aa13.37□□□□□ -0.27
HDAC9-211ENST00000430454 ROBO2Q9HCK4 1378 aa13.36□□□□□ -0.27
HDAC9-211ENST00000430454 STK26Q9P289 416 aa13.36□□□□□ -0.27
HDAC9-211ENST00000430454 LRPPRCP42704 1394 aaKnown RBP13.35□□□□□ -0.27
HDAC9-211ENST00000430454 ASXL1Q8IXJ9 1541 aa13.35□□□□□ -0.27
HDAC9-211ENST00000430454 COL16A1Q07092 1604 aaPredicted RBP13.35□□□□□ -0.27
HDAC9-211ENST00000430454 ABCC11Q96J66 1382 aa13.34□□□□□ -0.27
HDAC9-211ENST00000430454 PIK3C2GO75747 1445 aa13.34□□□□□ -0.27
HDAC9-211ENST00000430454 ZNF772Q68DY9 489 aaPredicted RBP13.34□□□□□ -0.27
HDAC9-211ENST00000430454 SIRT1Q96EB6 747 aa13.34□□□□□ -0.27
HDAC9-211ENST00000430454 DHX57Q6P158 1386 aaKnown RBP13.33□□□□□ -0.27
HDAC9-211ENST00000430454 C14orf93Q9H972 538 aaKnown RBP13.33□□□□□ -0.28
HDAC9-211ENST00000430454 SETD1AO15047 1707 aaKnown RBP13.33□□□□□ -0.28
HDAC9-211ENST00000430454 TECPR2O15040 1411 aa13.32□□□□□ -0.28
HDAC9-211ENST00000430454 MYOM2P54296 1465 aa13.32□□□□□ -0.28
HDAC9-211ENST00000430454 C1orf167Q5SNV9 1468 aa13.32□□□□□ -0.28
HDAC9-211ENST00000430454 NALCNQ8IZF0 1738 aa13.32□□□□□ -0.28
HDAC9-211ENST00000430454 IFT172Q9UG01 1749 aa13.31□□□□□ -0.28
HDAC9-211ENST00000430454 SHPRHQ149N8 1683 aa13.31□□□□□ -0.28
HDAC9-211ENST00000430454 YTHDC2Q9H6S0 1430 aaKnown RBP13.3□□□□□ -0.28
HDAC9-211ENST00000430454 ESCO1Q5FWF5 840 aa13.3□□□□□ -0.28
HDAC9-211ENST00000430454 TMEM132EQ6IEE7 984 aa13.3□□□□□ -0.28
HDAC9-211ENST00000430454 RGS17Q9UGC6 210 aaPredicted RBP13.3□□□□□ -0.28
Retrieved 100 of 20,778 RNA–protein pairs in 15.2 ms