RNA–Protein interactions for RNA: ENST00000429896.6

PTCH1-207, Transcript of patched 1, humanhuman

TSL 1 (best) BASIC

Gene PTCH1, Length 6,563 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTCH1-207ENST00000429896 TULP1O00294 542 aaPredicted RBP16.79■□□□□ 0.28
PTCH1-207ENST00000429896 NBPF1Q3BBV0 1214 aa16.79■□□□□ 0.28
PTCH1-207ENST00000429896 MYH16Q9H6N6 1097 aa16.79■□□□□ 0.28
PTCH1-207ENST00000429896 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP16.79■□□□□ 0.28
PTCH1-207ENST00000429896 CLASP1Q7Z460 1538 aa16.78■□□□□ 0.28
PTCH1-207ENST00000429896 CNTLNQ9NXG0 1405 aa16.77■□□□□ 0.28
PTCH1-207ENST00000429896 CCER2I3L3R5 266 aa16.77■□□□□ 0.28
PTCH1-207ENST00000429896 NPHP1O15259 732 aa16.77■□□□□ 0.28
PTCH1-207ENST00000429896 ATP7AQ04656 1500 aa16.77■□□□□ 0.28
PTCH1-207ENST00000429896 TPRNQ4KMQ1 711 aa16.77■□□□□ 0.28
PTCH1-207ENST00000429896 ZFYVE16Q7Z3T8 1539 aa16.77■□□□□ 0.27
PTCH1-207ENST00000429896 PTPRKQ15262 1439 aa16.76■□□□□ 0.27
PTCH1-207ENST00000429896 CDK19Q9BWU1 502 aa16.75■□□□□ 0.27
PTCH1-207ENST00000429896 CALD1Q05682 793 aaKnown RBP16.75■□□□□ 0.27
PTCH1-207ENST00000429896 ZMYM3Q14202 1370 aa16.74■□□□□ 0.27
PTCH1-207ENST00000429896 PIP4K2BP78356 416 aa16.74■□□□□ 0.27
PTCH1-207ENST00000429896 NLRP13Q86W25 1043 aa16.73■□□□□ 0.27
PTCH1-207ENST00000429896 PMFBP1Q8TBY8 1022 aa16.73■□□□□ 0.27
PTCH1-207ENST00000429896 MAPKBP1O60336 1514 aa16.72■□□□□ 0.27
PTCH1-207ENST00000429896 NUTM2GQ5VZR2 741 aa16.71■□□□□ 0.27
PTCH1-207ENST00000429896 NBPF8Q3BBV2 869 aa16.71■□□□□ 0.27
PTCH1-207ENST00000429896 FTSJ3Q8IY81 847 aaKnown RBP16.71■□□□□ 0.27
PTCH1-207ENST00000429896 NLRP6P59044 892 aa16.71■□□□□ 0.27
PTCH1-207ENST00000429896 AMOTL2Q9Y2J4 779 aa16.71■□□□□ 0.26
PTCH1-207ENST00000429896 UPF2Q9HAU5 1272 aaKnown RBP16.7■□□□□ 0.26
PTCH1-207ENST00000429896 MYO5CQ9NQX4 1742 aa16.7■□□□□ 0.26
PTCH1-207ENST00000429896 NOS1P29475 1434 aa16.7■□□□□ 0.26
PTCH1-207ENST00000429896 DNMT1P26358 1616 aaKnown RBP16.7■□□□□ 0.26
PTCH1-207ENST00000429896 MAGI3Q5TCQ9 1506 aa16.7■□□□□ 0.26
PTCH1-207ENST00000429896 MYBBP1AQ9BQG0 1328 aaKnown RBP16.7■□□□□ 0.26
PTCH1-207ENST00000429896 ABTB2Q8N961 1025 aa16.7■□□□□ 0.26
PTCH1-207ENST00000429896 TAOK2Q9UL54 1235 aa16.69■□□□□ 0.26
PTCH1-207ENST00000429896 ADGRF5Q8IZF2 1346 aa16.69■□□□□ 0.26
PTCH1-207ENST00000429896 RIMBP3CA6NJZ7 1639 aa16.68■□□□□ 0.26
PTCH1-207ENST00000429896 RIMBP3BA6NNM3 1639 aa16.68■□□□□ 0.26
PTCH1-207ENST00000429896 RIMBP3Q9UFD9 1639 aa16.68■□□□□ 0.26
PTCH1-207ENST00000429896 KIF7Q2M1P5 1343 aa16.67■□□□□ 0.26
PTCH1-207ENST00000429896 LMOD3Q0VAK6 560 aa16.67■□□□□ 0.26
PTCH1-207ENST00000429896 ZNF692Q9BU19 519 aaPredicted RBP16.67■□□□□ 0.26
PTCH1-207ENST00000429896 CCDC7Q96M83 1385 aa16.66■□□□□ 0.26
PTCH1-207ENST00000429896 CABP1Q9NZU7 370 aa16.66■□□□□ 0.26
PTCH1-207ENST00000429896 C1orf141Q5JVX7 400 aa16.66■□□□□ 0.26
PTCH1-207ENST00000429896 GGNBP2Q9H3C7 697 aa16.66■□□□□ 0.26
PTCH1-207ENST00000429896 WAPLQ7Z5K2 1190 aa16.65■□□□□ 0.26
PTCH1-207ENST00000429896 TTC37Q6PGP7 1564 aa16.65■□□□□ 0.26
PTCH1-207ENST00000429896 RIMS2Q9UQ26 1411 aa16.65■□□□□ 0.26
PTCH1-207ENST00000429896 UHRF1BP1Q6BDS2 1440 aa16.64■□□□□ 0.25
PTCH1-207ENST00000429896 FRAT1Q92837 279 aaPredicted RBP16.64■□□□□ 0.25
PTCH1-207ENST00000429896 CCDC136Q96JN2 1154 aa16.64■□□□□ 0.25
PTCH1-207ENST00000429896 ATAD2Q6PL18 1390 aa16.64■□□□□ 0.25
PTCH1-207ENST00000429896 DIAPH1O60610 1272 aaKnown RBP16.64■□□□□ 0.25
PTCH1-207ENST00000429896 YEATS2Q9ULM3 1422 aa16.64■□□□□ 0.25
PTCH1-207ENST00000429896 CCDC146Q8IYE0 955 aa16.63■□□□□ 0.25
PTCH1-207ENST00000429896 MS4A1P11836 297 aa16.63■□□□□ 0.25
PTCH1-207ENST00000429896 CHMP4AQ9BY43 222 aa16.63■□□□□ 0.25
PTCH1-207ENST00000429896 ADGRL2O95490 1459 aa16.63■□□□□ 0.25
PTCH1-207ENST00000429896 HSPA2P54652 639 aa16.63■□□□□ 0.25
PTCH1-207ENST00000429896 TSPOAP1O95153 1857 aa16.62■□□□□ 0.25
PTCH1-207ENST00000429896 NUTM2BA6NNL0 878 aaPredicted RBP16.62■□□□□ 0.25
PTCH1-207ENST00000429896 NUTM2EB1AL46 878 aaPredicted RBP16.62■□□□□ 0.25
PTCH1-207ENST00000429896 NUTM2AQ8IVF1 878 aaPredicted RBP16.62■□□□□ 0.25
PTCH1-207ENST00000429896 ARHGEF5Q12774 1597 aa16.61■□□□□ 0.25
PTCH1-207ENST00000429896 CHMP4BQ9H444 224 aaKnown RBP16.61■□□□□ 0.25
PTCH1-207ENST00000429896 C14orf93Q9H972 538 aaKnown RBP16.61■□□□□ 0.25
PTCH1-207ENST00000429896 ZNF330Q9Y3S2 320 aaPredicted RBP16.61■□□□□ 0.25
PTCH1-207ENST00000429896 MAGI2Q86UL8 1455 aa16.61■□□□□ 0.25
PTCH1-207ENST00000429896 NUDT16Q96DE0 195 aaKnown RBP16.61■□□□□ 0.25
PTCH1-207ENST00000429896 NCKAP5LQ9HCH0 1330 aa16.6■□□□□ 0.25
PTCH1-207ENST00000429896 NLRP2Q9NX02 1062 aa16.6■□□□□ 0.25
PTCH1-207ENST00000429896 SLC12A5Q9H2X9 1139 aa16.59■□□□□ 0.25
PTCH1-207ENST00000429896 ADCY10Q96PN6 1610 aa16.58■□□□□ 0.24
PTCH1-207ENST00000429896 RPRD2Q5VT52 1461 aaKnown RBP16.58■□□□□ 0.24
PTCH1-207ENST00000429896 RAPGEF4Q8WZA2 1011 aa16.58■□□□□ 0.24
PTCH1-207ENST00000429896 RBM33Q96EV2 1170 aaKnown RBP16.58■□□□□ 0.24
PTCH1-207ENST00000429896 PHF23Q9BUL5 403 aaPredicted RBP16.58■□□□□ 0.24
PTCH1-207ENST00000429896 SAMD9LQ8IVG5 1584 aa16.57■□□□□ 0.24
PTCH1-207ENST00000429896 XPCQ01831 940 aaPredicted RBP16.57■□□□□ 0.24
PTCH1-207ENST00000429896 ABCC1P33527 1531 aa16.57■□□□□ 0.24
PTCH1-207ENST00000429896 CCDC61Q9Y6R9 512 aa16.57■□□□□ 0.24
PTCH1-207ENST00000429896 PRKRIP1Q9H875 184 aaPredicted RBP16.56■□□□□ 0.24
PTCH1-207ENST00000429896 PREX2Q70Z35 1606 aa16.56■□□□□ 0.24
PTCH1-207ENST00000429896 MAST1Q9Y2H9 1570 aa16.56■□□□□ 0.24
PTCH1-207ENST00000429896 CDK11BP21127 795 aaKnown RBP16.55■□□□□ 0.24
PTCH1-207ENST00000429896 MSH6P52701 1360 aa16.55■□□□□ 0.24
PTCH1-207ENST00000429896 MLH3Q9UHC1 1453 aa16.55■□□□□ 0.24
PTCH1-207ENST00000429896 STK31Q9BXU1 1019 aa16.55■□□□□ 0.24
PTCH1-207ENST00000429896 WASLO00401 505 aaPredicted RBP16.54■□□□□ 0.24
PTCH1-207ENST00000429896 MBD5Q9P267 1494 aa16.54■□□□□ 0.24
PTCH1-207ENST00000429896 SMG6Q86US8 1419 aaKnown RBP16.54■□□□□ 0.24
PTCH1-207ENST00000429896 KDM6BO15054 1643 aa16.54■□□□□ 0.24
PTCH1-207ENST00000429896 CADPS2Q86UW7 1296 aa16.54■□□□□ 0.24
PTCH1-207ENST00000429896 STRN4Q9NRL3 753 aa16.54■□□□□ 0.24
PTCH1-207ENST00000429896 PHF8Q9UPP1 1060 aa16.54■□□□□ 0.24
PTCH1-207ENST00000429896 LRPPRCP42704 1394 aaKnown RBP16.53■□□□□ 0.24
PTCH1-207ENST00000429896 TEFQ10587 303 aa16.53■□□□□ 0.24
PTCH1-207ENST00000429896 WASHC2AQ641Q2 1341 aa16.53■□□□□ 0.24
PTCH1-207ENST00000429896 RRP7AQ9Y3A4 280 aaKnown RBP16.52■□□□□ 0.24
PTCH1-207ENST00000429896 SHROOM2Q13796 1616 aa16.52■□□□□ 0.23
PTCH1-207ENST00000429896 SCAF11Q99590 1463 aaKnown RBP16.52■□□□□ 0.23
PTCH1-207ENST00000429896 HECW2Q9P2P5 1572 aa16.52■□□□□ 0.23
Retrieved 100 of 20,778 RNA–protein pairs in 9.6 ms