RNA–Protein interactions for RNA: ENST00000429846.1

MSH5-208, Transcript of mutS homolog 5, humanhuman

TSL 3

Gene MSH5, Length 616 nt, Biotype protein coding, Subcellular localisation Cytosol .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MSH5-208ENST00000429846 ZFYVE9O95405 1425 aa22.9■■□□□ 1.26
MSH5-208ENST00000429846 KCNA6P17658 529 aa22.89■■□□□ 1.25
MSH5-208ENST00000429846 TMEM94Q12767 1356 aa22.87■■□□□ 1.25
MSH5-208ENST00000429846 HDGFP51858 240 aaKnown RBP22.86■■□□□ 1.25
MSH5-208ENST00000429846 SLC26A8Q96RN1 970 aa22.86■■□□□ 1.25
MSH5-208ENST00000429846 PLEKHG1Q9ULL1 1385 aa22.86■■□□□ 1.25
MSH5-208ENST00000429846 RIMS2Q9UQ26 1411 aa22.85■■□□□ 1.25
MSH5-208ENST00000429846 FAM135BQ49AJ0 1406 aa22.83■■□□□ 1.25
MSH5-208ENST00000429846 CHD2O14647 1828 aaKnown RBP22.83■■□□□ 1.25
MSH5-208ENST00000429846 PPP1R15AO75807 674 aaPredicted RBP22.81■■□□□ 1.24
MSH5-208ENST00000429846 PROSER2Q86WR7 435 aaPredicted RBP22.81■■□□□ 1.24
MSH5-208ENST00000429846 BCANQ96GW7 911 aa22.81■■□□□ 1.24
MSH5-208ENST00000429846 DIP2AQ14689 1571 aa22.8■■□□□ 1.24
MSH5-208ENST00000429846 NUP155O75694 1391 aa22.79■■□□□ 1.24
MSH5-208ENST00000429846 ROBO1Q9Y6N7 1651 aa22.79■■□□□ 1.24
MSH5-208ENST00000429846 ABCF1Q8NE71 845 aaKnown RBP eCLIP22.79■■□□□ 1.24
MSH5-208ENST00000429846 PHF23Q9BUL5 403 aaPredicted RBP22.79■■□□□ 1.24
MSH5-208ENST00000429846 MSH6P52701 1360 aa22.77■■□□□ 1.24
MSH5-208ENST00000429846 SENP3Q9H4L4 574 aaPredicted RBP22.76■■□□□ 1.23
MSH5-208ENST00000429846 SPHKAPQ2M3C7 1700 aa22.75■■□□□ 1.23
MSH5-208ENST00000429846 CHGAP10645 457 aaKnown RBP22.74■■□□□ 1.23
MSH5-208ENST00000429846 ITGAEP38570 1179 aa22.74■■□□□ 1.23
MSH5-208ENST00000429846 TBX22Q9Y458 520 aa22.74■■□□□ 1.23
MSH5-208ENST00000429846 NCOA3Q9Y6Q9 1424 aa22.74■■□□□ 1.23
MSH5-208ENST00000429846 PIK3R4Q99570 1358 aa22.73■■□□□ 1.23
MSH5-208ENST00000429846 ADAMTS13Q76LX8 1427 aa22.73■■□□□ 1.23
MSH5-208ENST00000429846 RRBP1Q9P2E9 1410 aaKnown RBP22.71■■□□□ 1.23
MSH5-208ENST00000429846 RBM33Q96EV2 1170 aaKnown RBP22.7■■□□□ 1.22
MSH5-208ENST00000429846 TRPM2O94759 1503 aa22.7■■□□□ 1.22
MSH5-208ENST00000429846 PPARGC1BQ86YN6 1023 aaKnown RBP22.67■■□□□ 1.22
MSH5-208ENST00000429846 PHLPP1O60346 1717 aa22.65■■□□□ 1.22
MSH5-208ENST00000429846 SETBP1Q9Y6X0 1596 aa22.65■■□□□ 1.22
MSH5-208ENST00000429846 SLAIN2Q9P270 581 aa22.65■■□□□ 1.22
MSH5-208ENST00000429846 NUTM2DQ5VT03 806 aaPredicted RBP22.63■■□□□ 1.21
MSH5-208ENST00000429846 NRXN3Q9Y4C0 1643 aa22.63■■□□□ 1.21
MSH5-208ENST00000429846 SIPA1L2Q9P2F8 1722 aaPredicted RBP22.62■■□□□ 1.21
MSH5-208ENST00000429846 NAIPQ13075 1403 aa22.61■■□□□ 1.21
MSH5-208ENST00000429846 XRN1Q8IZH2 1706 aaKnown RBP22.6■■□□□ 1.21
MSH5-208ENST00000429846 CLTCL1P53675 1640 aa22.6■■□□□ 1.21
MSH5-208ENST00000429846 C14orf37Q86TY3 774 aa22.59■■□□□ 1.21
MSH5-208ENST00000429846 CADPS2Q86UW7 1296 aa22.59■■□□□ 1.21
MSH5-208ENST00000429846 KIF1BO60333 1816 aa22.59■■□□□ 1.21
MSH5-208ENST00000429846 COL16A1Q07092 1604 aaPredicted RBP22.58■■□□□ 1.21
MSH5-208ENST00000429846 C19orf44Q9H6X5 657 aa22.58■■□□□ 1.21
MSH5-208ENST00000429846 DCCP43146 1447 aa22.57■■□□□ 1.2
MSH5-208ENST00000429846 JCADQ9P266 1359 aa22.57■■□□□ 1.2
MSH5-208ENST00000429846 NEXMIFQ5QGS0 1516 aa22.57■■□□□ 1.2
MSH5-208ENST00000429846 HFM1A2PYH4 1435 aa22.57■■□□□ 1.2
MSH5-208ENST00000429846 PTPRUQ92729 1446 aa22.57■■□□□ 1.2
MSH5-208ENST00000429846 RGS17Q9UGC6 210 aaPredicted RBP22.56■■□□□ 1.2
MSH5-208ENST00000429846 AHDC1Q5TGY3 1603 aaPredicted RBP22.56■■□□□ 1.2
MSH5-208ENST00000429846 ZNF326Q5BKZ1 582 aaKnown RBP22.55■■□□□ 1.2
MSH5-208ENST00000429846 AMOTL2Q9Y2J4 779 aa22.55■■□□□ 1.2
MSH5-208ENST00000429846 ATF3P18847 181 aa22.54■■□□□ 1.2
MSH5-208ENST00000429846 SHPRHQ149N8 1683 aa22.49■■□□□ 1.19
MSH5-208ENST00000429846 METP08581 1390 aa22.48■■□□□ 1.19
MSH5-208ENST00000429846 SPATA31A6Q5VVP1 1343 aa22.47■■□□□ 1.19
MSH5-208ENST00000429846 SETD1AO15047 1707 aaKnown RBP22.44■■□□□ 1.18
MSH5-208ENST00000429846 ASXL1Q8IXJ9 1541 aa22.44■■□□□ 1.18
MSH5-208ENST00000429846 TRIM52Q96A61 297 aa22.44■■□□□ 1.18
MSH5-208ENST00000429846 ADGRL3Q9HAR2 1447 aa22.44■■□□□ 1.18
MSH5-208ENST00000429846 NALCNQ8IZF0 1738 aa22.43■■□□□ 1.18
MSH5-208ENST00000429846 MST1RQ04912 1400 aa22.43■■□□□ 1.18
MSH5-208ENST00000429846 POTEAQ6S8J7 498 aa22.43■■□□□ 1.18
MSH5-208ENST00000429846 BRINP3Q76B58 766 aa22.43■■□□□ 1.18
MSH5-208ENST00000429846 NHSL1Q5SYE7 1610 aa22.42■■□□□ 1.18
MSH5-208ENST00000429846 PPLO60437 1756 aa22.42■■□□□ 1.18
MSH5-208ENST00000429846 PTCH1Q13635 1447 aa22.41■■□□□ 1.18
MSH5-208ENST00000429846 RPGRIP1LQ68CZ1 1315 aa22.41■■□□□ 1.18
MSH5-208ENST00000429846 VGFO15240 615 aaPredicted RBP22.41■■□□□ 1.18
MSH5-208ENST00000429846 SLC4A1APQ9BWU0 796 aaKnown RBP22.41■■□□□ 1.18
MSH5-208ENST00000429846 LRP6O75581 1613 aa22.41■■□□□ 1.18
MSH5-208ENST00000429846 PRAG1Q86YV5 1406 aa22.4■■□□□ 1.18
MSH5-208ENST00000429846 SETD5Q9C0A6 1442 aa22.37■■□□□ 1.17
MSH5-208ENST00000429846 MEX3CQ5U5Q3 659 aaKnown RBP22.35■■□□□ 1.17
MSH5-208ENST00000429846 LAMC1P11047 1609 aa22.32■■□□□ 1.16
MSH5-208ENST00000429846 ZNF772Q68DY9 489 aaPredicted RBP22.32■■□□□ 1.16
MSH5-208ENST00000429846 CCDC144AA2RUR9 1427 aa22.31■■□□□ 1.16
MSH5-208ENST00000429846 C1orf167Q5SNV9 1468 aa22.3■■□□□ 1.16
MSH5-208ENST00000429846 ROBO2Q9HCK4 1378 aa22.3■■□□□ 1.16
MSH5-208ENST00000429846 LRRC59Q96AG4 307 aaKnown RBP22.3■■□□□ 1.16
MSH5-208ENST00000429846 IFT172Q9UG01 1749 aa22.29■■□□□ 1.16
MSH5-208ENST00000429846 ACIN1Q9UKV3 1341 aaKnown RBP22.28■■□□□ 1.16
MSH5-208ENST00000429846 ANKRD30BQ9BXX2 1392 aa22.25■■□□□ 1.15
MSH5-208ENST00000429846 CDC42BPGQ6DT37 1551 aa22.25■■□□□ 1.15
MSH5-208ENST00000429846 SPATA31E1Q6ZUB1 1445 aa22.25■■□□□ 1.15
MSH5-208ENST00000429846 PNPLA6Q8IY17 1366 aa22.25■■□□□ 1.15
MSH5-208ENST00000429846 FOXD1Q16676 465 aa22.24■■□□□ 1.15
MSH5-208ENST00000429846 NUTM2BA6NNL0 878 aaPredicted RBP22.23■■□□□ 1.15
MSH5-208ENST00000429846 NUTM2EB1AL46 878 aaPredicted RBP22.23■■□□□ 1.15
MSH5-208ENST00000429846 NUTM2AQ8IVF1 878 aaPredicted RBP22.23■■□□□ 1.15
MSH5-208ENST00000429846 MPHOSPH9Q99550 1183 aa22.22■■□□□ 1.15
MSH5-208ENST00000429846 KNDC1Q76NI1 1749 aa22.22■■□□□ 1.15
MSH5-208ENST00000429846 TECPR2O15040 1411 aa22.22■■□□□ 1.15
MSH5-208ENST00000429846 CDK12Q9NYV4 1490 aaPredicted RBP22.22■■□□□ 1.15
MSH5-208ENST00000429846 DDX17Q92841 729 aaKnown RBP22.2■■□□□ 1.14
MSH5-208ENST00000429846 ADGRF5Q8IZF2 1346 aa22.19■■□□□ 1.14
MSH5-208ENST00000429846 PIK3C2GO75747 1445 aa22.18■■□□□ 1.14
MSH5-208ENST00000429846 AFF2P51816 1311 aa22.18■■□□□ 1.14
MSH5-208ENST00000429846 SOS2Q07890 1332 aaPredicted RBP22.18■■□□□ 1.14
Retrieved 100 of 20,778 RNA–protein pairs in 34.3 ms