RNA–Protein interactions for RNA: ENST00000428828.1

CECR3-201, Transcript of cat eye syndrome chromosome region, candidate 3, humanhuman

TSL 1 (best) BASIC

Gene CECR3, Length 1,915 nt, Biotype lincRNA.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CECR3-201ENST00000428828 STAG3Q9UJ98 1225 aa16.02■□□□□ 0.15
CECR3-201ENST00000428828 PPLO60437 1756 aa16.01■□□□□ 0.15
CECR3-201ENST00000428828 NLRP1Q9C000 1473 aa16.01■□□□□ 0.15
CECR3-201ENST00000428828 SPATA31E1Q6ZUB1 1445 aa16.01■□□□□ 0.15
CECR3-201ENST00000428828 KDM5AP29375 1690 aaKnown RBP16■□□□□ 0.15
CECR3-201ENST00000428828 ZNF326Q5BKZ1 582 aaKnown RBP16■□□□□ 0.15
CECR3-201ENST00000428828 NEURL4Q96JN8 1562 aa15.98■□□□□ 0.15
CECR3-201ENST00000428828 A2ML1A8K2U0 1454 aa15.97■□□□□ 0.15
CECR3-201ENST00000428828 L3MBTL2Q969R5 705 aa15.97■□□□□ 0.15
CECR3-201ENST00000428828 UHRF1BP1Q6BDS2 1440 aa15.97■□□□□ 0.15
CECR3-201ENST00000428828 KDM2AQ9Y2K7 1162 aa15.96■□□□□ 0.14
CECR3-201ENST00000428828 NEXMIFQ5QGS0 1516 aa15.95■□□□□ 0.14
CECR3-201ENST00000428828 DCAF11Q8TEB1 546 aa15.95■□□□□ 0.14
CECR3-201ENST00000428828 NUTM2DQ5VT03 806 aaPredicted RBP15.94■□□□□ 0.14
CECR3-201ENST00000428828 SENP3Q9H4L4 574 aaPredicted RBP15.93■□□□□ 0.14
CECR3-201ENST00000428828 POLR1AO95602 1720 aaPredicted RBP15.9■□□□□ 0.14
CECR3-201ENST00000428828 RIMS2Q9UQ26 1411 aa15.9■□□□□ 0.14
CECR3-201ENST00000428828 TIMELESSQ9UNS1 1208 aa15.9■□□□□ 0.14
CECR3-201ENST00000428828 TMEM2Q9UHN6 1383 aa15.88■□□□□ 0.13
CECR3-201ENST00000428828 MYOM2P54296 1465 aa15.88■□□□□ 0.13
CECR3-201ENST00000428828 ZFYVE9O95405 1425 aa15.88■□□□□ 0.13
CECR3-201ENST00000428828 IQGAP1P46940 1657 aa15.88■□□□□ 0.13
CECR3-201ENST00000428828 THEMISQ8N1K5 641 aaPredicted RBP15.88■□□□□ 0.13
CECR3-201ENST00000428828 RBM19Q9Y4C8 960 aaKnown RBP15.88■□□□□ 0.13
CECR3-201ENST00000428828 SLIT1O75093 1534 aa15.87■□□□□ 0.13
CECR3-201ENST00000428828 LMTK3Q96Q04 1460 aa15.87■□□□□ 0.13
CECR3-201ENST00000428828 RPGRIP1LQ68CZ1 1315 aa15.87■□□□□ 0.13
CECR3-201ENST00000428828 PPP1R15AO75807 674 aaPredicted RBP15.87■□□□□ 0.13
CECR3-201ENST00000428828 TRPM1Q7Z4N2 1603 aa15.87■□□□□ 0.13
CECR3-201ENST00000428828 ADGRF5Q8IZF2 1346 aa15.86■□□□□ 0.13
CECR3-201ENST00000428828 PRAG1Q86YV5 1406 aa15.85■□□□□ 0.13
CECR3-201ENST00000428828 NBPF8Q3BBV2 869 aa15.85■□□□□ 0.13
CECR3-201ENST00000428828 ARHGAP23Q9P227 1491 aa15.85■□□□□ 0.13
CECR3-201ENST00000428828 HSPA2P54652 639 aa15.84■□□□□ 0.13
CECR3-201ENST00000428828 FANCIQ9NVI1 1328 aa15.84■□□□□ 0.13
CECR3-201ENST00000428828 VGFO15240 615 aaPredicted RBP15.83■□□□□ 0.12
CECR3-201ENST00000428828 NRXN3Q9Y4C0 1643 aa15.83■□□□□ 0.12
CECR3-201ENST00000428828 SCAF11Q99590 1463 aaKnown RBP15.82■□□□□ 0.12
CECR3-201ENST00000428828 NRXN1Q9ULB1 1477 aa15.82■□□□□ 0.12
CECR3-201ENST00000428828 LTKP29376 864 aa15.82■□□□□ 0.12
CECR3-201ENST00000428828 TXNDC2Q86VQ3 553 aa15.82■□□□□ 0.12
CECR3-201ENST00000428828 EID1Q9Y6B2 187 aa15.82■□□□□ 0.12
CECR3-201ENST00000428828 KIAA1210Q9ULL0 1709 aa15.82■□□□□ 0.12
CECR3-201ENST00000428828 LAMC1P11047 1609 aa15.82■□□□□ 0.12
CECR3-201ENST00000428828 PIK3C2GO75747 1445 aa15.82■□□□□ 0.12
CECR3-201ENST00000428828 ABCF1Q8NE71 845 aaKnown RBP eCLIP15.82■□□□□ 0.12
CECR3-201ENST00000428828 BCANQ96GW7 911 aa15.82■□□□□ 0.12
CECR3-201ENST00000428828 SETD1AO15047 1707 aaKnown RBP15.81■□□□□ 0.12
CECR3-201ENST00000428828 HDGFP51858 240 aaKnown RBP15.8■□□□□ 0.12
CECR3-201ENST00000428828 STRCQ7RTU9 1775 aa15.79■□□□□ 0.12
CECR3-201ENST00000428828 SETBP1Q9Y6X0 1596 aa15.79■□□□□ 0.12
CECR3-201ENST00000428828 RALGAPBQ86X10 1494 aa15.78■□□□□ 0.12
CECR3-201ENST00000428828 ERICH6BQ5W0A0 696 aa15.78■□□□□ 0.12
CECR3-201ENST00000428828 ANKLE2Q86XL3 938 aa15.78■□□□□ 0.12
CECR3-201ENST00000428828 STAC3Q96MF2 364 aa15.78■□□□□ 0.12
CECR3-201ENST00000428828 ALKQ9UM73 1620 aa15.78■□□□□ 0.12
CECR3-201ENST00000428828 CFAP70Q5T0N1 1121 aa15.78■□□□□ 0.12
CECR3-201ENST00000428828 NCKAP5LQ9HCH0 1330 aa15.77■□□□□ 0.12
CECR3-201ENST00000428828 ROCK2O75116 1388 aaKnown RBP15.77■□□□□ 0.11
CECR3-201ENST00000428828 PLEKHG1Q9ULL1 1385 aa15.77■□□□□ 0.11
CECR3-201ENST00000428828 AEBP2Q6ZN18 517 aaPredicted RBP15.76■□□□□ 0.11
CECR3-201ENST00000428828 NBPF1Q3BBV0 1214 aa15.75■□□□□ 0.11
CECR3-201ENST00000428828 ASXL1Q8IXJ9 1541 aa15.74■□□□□ 0.11
CECR3-201ENST00000428828 SLC26A8Q96RN1 970 aa15.74■□□□□ 0.11
CECR3-201ENST00000428828 NPHP4O75161 1426 aaPredicted RBP15.73■□□□□ 0.11
CECR3-201ENST00000428828 ADAMTS13Q76LX8 1427 aa15.73■□□□□ 0.11
CECR3-201ENST00000428828 TMEM132EQ6IEE7 984 aa15.72■□□□□ 0.11
CECR3-201ENST00000428828 C14orf93Q9H972 538 aaKnown RBP15.72■□□□□ 0.11
CECR3-201ENST00000428828 ADGRB1O14514 1584 aa15.72■□□□□ 0.11
CECR3-201ENST00000428828 DIP2AQ14689 1571 aa15.72■□□□□ 0.11
CECR3-201ENST00000428828 MSH5O43196 834 aa15.72■□□□□ 0.11
CECR3-201ENST00000428828 CARD11Q9BXL7 1154 aa15.72■□□□□ 0.11
CECR3-201ENST00000428828 MED14O60244 1454 aa15.71■□□□□ 0.11
CECR3-201ENST00000428828 ARHGEF28Q8N1W1 1705 aaKnown RBP15.7■□□□□ 0.1
CECR3-201ENST00000428828 METP08581 1390 aa15.69■□□□□ 0.1
CECR3-201ENST00000428828 CHD2O14647 1828 aaKnown RBP15.69■□□□□ 0.1
CECR3-201ENST00000428828 GPRASP1Q5JY77 1395 aa15.68■□□□□ 0.1
CECR3-201ENST00000428828 STK26Q9P289 416 aa15.68■□□□□ 0.1
CECR3-201ENST00000428828 KNDC1Q76NI1 1749 aa15.68■□□□□ 0.1
CECR3-201ENST00000428828 HIRIP3Q9BW71 556 aaPredicted RBP15.66■□□□□ 0.1
CECR3-201ENST00000428828 USP47Q96K76 1375 aa15.66■□□□□ 0.1
CECR3-201ENST00000428828 TRAK1Q9UPV9 953 aa15.66■□□□□ 0.1
CECR3-201ENST00000428828 YTHDC2Q9H6S0 1430 aaKnown RBP15.66■□□□□ 0.1
CECR3-201ENST00000428828 QRICH2Q9H0J4 1663 aa15.65■□□□□ 0.1
CECR3-201ENST00000428828 XRN1Q8IZH2 1706 aaKnown RBP15.64■□□□□ 0.09
CECR3-201ENST00000428828 STRCP1A6NGW2 1772 aa15.64■□□□□ 0.09
CECR3-201ENST00000428828 FKBP8Q14318 412 aa15.64■□□□□ 0.09
CECR3-201ENST00000428828 TBX22Q9Y458 520 aa15.64■□□□□ 0.09
CECR3-201ENST00000428828 PTPRUQ92729 1446 aa15.63■□□□□ 0.09
CECR3-201ENST00000428828 NEFLP07196 543 aa15.62■□□□□ 0.09
CECR3-201ENST00000428828 HSPA5P11021 654 aaKnown RBP15.62■□□□□ 0.09
CECR3-201ENST00000428828 EIF4G2P78344 907 aaKnown RBP eCLIP15.62■□□□□ 0.09
CECR3-201ENST00000428828 CPS1P31327 1500 aa15.62■□□□□ 0.09
CECR3-201ENST00000428828 LRPPRCP42704 1394 aaKnown RBP15.61■□□□□ 0.09
CECR3-201ENST00000428828 EIF3AQ14152 1382 aaKnown RBP15.61■□□□□ 0.09
CECR3-201ENST00000428828 DEKP35659 375 aaKnown RBP15.6■□□□□ 0.09
CECR3-201ENST00000428828 NWD1Q149M9 1564 aa15.59■□□□□ 0.09
CECR3-201ENST00000428828 ST20-MTHFSA0A0A6YYL1 179 aa15.59■□□□□ 0.09
CECR3-201ENST00000428828 SAFB2Q14151 953 aaKnown RBP eCLIP15.59■□□□□ 0.09
CECR3-201ENST00000428828 AMOTL2Q9Y2J4 779 aa15.59■□□□□ 0.09
Retrieved 100 of 20,778 RNA–protein pairs in 29.5 ms