RNA–Protein interactions for RNA: ENST00000428643.1

HMGA1P4-201, Transcript of high mobility group AT-hook 1 pseudogene 4, humanhuman

TSL 2 BASIC

Gene HMGA1P4, Length 334 nt, Biotype antisense RNA, Subcellular localisation Cytoplasm .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGA1P4-201ENST00000428643 NEXMIFQ5QGS0 1516 aa11.33□□□□□ -0.6
HMGA1P4-201ENST00000428643 ZNF142P52746 1687 aaPredicted RBP11.33□□□□□ -0.6
HMGA1P4-201ENST00000428643 UBR1Q8IWV7 1749 aa11.32□□□□□ -0.6
HMGA1P4-201ENST00000428643 TMEM2Q9UHN6 1383 aa11.32□□□□□ -0.6
HMGA1P4-201ENST00000428643 NUTM2DQ5VT03 806 aaPredicted RBP11.32□□□□□ -0.6
HMGA1P4-201ENST00000428643 KDM5AP29375 1690 aaKnown RBP11.32□□□□□ -0.6
HMGA1P4-201ENST00000428643 THEMISQ8N1K5 641 aaPredicted RBP11.31□□□□□ -0.6
HMGA1P4-201ENST00000428643 PRAG1Q86YV5 1406 aa11.31□□□□□ -0.6
HMGA1P4-201ENST00000428643 ZFYVE9O95405 1425 aa11.3□□□□□ -0.6
HMGA1P4-201ENST00000428643 VGFO15240 615 aaPredicted RBP11.3□□□□□ -0.6
HMGA1P4-201ENST00000428643 ABCF1Q8NE71 845 aaKnown RBP eCLIP11.3□□□□□ -0.6
HMGA1P4-201ENST00000428643 ADGRF5Q8IZF2 1346 aa11.3□□□□□ -0.6
HMGA1P4-201ENST00000428643 SLIT1O75093 1534 aa11.3□□□□□ -0.6
HMGA1P4-201ENST00000428643 HDGFP51858 240 aaKnown RBP11.29□□□□□ -0.6
HMGA1P4-201ENST00000428643 STAC3Q96MF2 364 aa11.29□□□□□ -0.6
HMGA1P4-201ENST00000428643 EID1Q9Y6B2 187 aa11.29□□□□□ -0.6
HMGA1P4-201ENST00000428643 IFT172Q9UG01 1749 aa11.29□□□□□ -0.6
HMGA1P4-201ENST00000428643 SCAF11Q99590 1463 aaKnown RBP11.28□□□□□ -0.6
HMGA1P4-201ENST00000428643 ARHGAP23Q9P227 1491 aa11.28□□□□□ -0.6
HMGA1P4-201ENST00000428643 NRXN1Q9ULB1 1477 aa11.28□□□□□ -0.6
HMGA1P4-201ENST00000428643 NBPF8Q3BBV2 869 aa11.28□□□□□ -0.6
HMGA1P4-201ENST00000428643 PPLO60437 1756 aa11.28□□□□□ -0.6
HMGA1P4-201ENST00000428643 MYO5BQ9ULV0 1848 aa11.28□□□□□ -0.6
HMGA1P4-201ENST00000428643 PIK3C2GO75747 1445 aa11.27□□□□□ -0.6
HMGA1P4-201ENST00000428643 LMTK3Q96Q04 1460 aa11.27□□□□□ -0.6
HMGA1P4-201ENST00000428643 TXNDC2Q86VQ3 553 aa11.27□□□□□ -0.61
HMGA1P4-201ENST00000428643 BCANQ96GW7 911 aa11.27□□□□□ -0.61
HMGA1P4-201ENST00000428643 RALGAPBQ86X10 1494 aa11.26□□□□□ -0.61
HMGA1P4-201ENST00000428643 ROCK2O75116 1388 aaKnown RBP11.26□□□□□ -0.61
HMGA1P4-201ENST00000428643 LTKP29376 864 aa11.25□□□□□ -0.61
HMGA1P4-201ENST00000428643 HSPA2P54652 639 aa11.25□□□□□ -0.61
HMGA1P4-201ENST00000428643 ANKLE2Q86XL3 938 aa11.25□□□□□ -0.61
HMGA1P4-201ENST00000428643 PLEKHG1Q9ULL1 1385 aa11.25□□□□□ -0.61
HMGA1P4-201ENST00000428643 CFAP70Q5T0N1 1121 aa11.23□□□□□ -0.61
HMGA1P4-201ENST00000428643 SETBP1Q9Y6X0 1596 aa11.23□□□□□ -0.61
HMGA1P4-201ENST00000428643 SETD1BQ9UPS6 1966 aaKnown RBP11.23□□□□□ -0.61
HMGA1P4-201ENST00000428643 MSH5O43196 834 aa11.22□□□□□ -0.61
HMGA1P4-201ENST00000428643 LAMC1P11047 1609 aa11.22□□□□□ -0.61
HMGA1P4-201ENST00000428643 TRPM1Q7Z4N2 1603 aa11.22□□□□□ -0.61
HMGA1P4-201ENST00000428643 NPHP4O75161 1426 aaPredicted RBP11.21□□□□□ -0.61
HMGA1P4-201ENST00000428643 NCKAP5LQ9HCH0 1330 aa11.21□□□□□ -0.61
HMGA1P4-201ENST00000428643 CARD11Q9BXL7 1154 aa11.21□□□□□ -0.61
HMGA1P4-201ENST00000428643 C14orf93Q9H972 538 aaKnown RBP11.21□□□□□ -0.61
HMGA1P4-201ENST00000428643 IQGAP1P46940 1657 aa11.2□□□□□ -0.62
HMGA1P4-201ENST00000428643 GPRASP1Q5JY77 1395 aa11.2□□□□□ -0.62
HMGA1P4-201ENST00000428643 NBPF1Q3BBV0 1214 aa11.2□□□□□ -0.62
HMGA1P4-201ENST00000428643 ALKQ9UM73 1620 aa11.2□□□□□ -0.62
HMGA1P4-201ENST00000428643 NRXN3Q9Y4C0 1643 aa11.2□□□□□ -0.62
HMGA1P4-201ENST00000428643 ADAMTS13Q76LX8 1427 aa11.19□□□□□ -0.62
HMGA1P4-201ENST00000428643 USP47Q96K76 1375 aa11.19□□□□□ -0.62
HMGA1P4-201ENST00000428643 SLC26A8Q96RN1 970 aa11.19□□□□□ -0.62
HMGA1P4-201ENST00000428643 ADGRB1O14514 1584 aa11.19□□□□□ -0.62
HMGA1P4-201ENST00000428643 DIP2AQ14689 1571 aa11.19□□□□□ -0.62
HMGA1P4-201ENST00000428643 ASXL1Q8IXJ9 1541 aa11.19□□□□□ -0.62
HMGA1P4-201ENST00000428643 POLR1AO95602 1720 aaPredicted RBP11.18□□□□□ -0.62
HMGA1P4-201ENST00000428643 KIAA1210Q9ULL0 1709 aa11.18□□□□□ -0.62
HMGA1P4-201ENST00000428643 TMEM132EQ6IEE7 984 aa11.18□□□□□ -0.62
HMGA1P4-201ENST00000428643 MED14O60244 1454 aa11.18□□□□□ -0.62
HMGA1P4-201ENST00000428643 EIF3AQ14152 1382 aaKnown RBP11.17□□□□□ -0.62
HMGA1P4-201ENST00000428643 STK26Q9P289 416 aa11.17□□□□□ -0.62
HMGA1P4-201ENST00000428643 METP08581 1390 aa11.16□□□□□ -0.62
HMGA1P4-201ENST00000428643 EIF4G2P78344 907 aaKnown RBP eCLIP11.16□□□□□ -0.62
HMGA1P4-201ENST00000428643 FBXO41Q8TF61 875 aa11.16□□□□□ -0.62
HMGA1P4-201ENST00000428643 YTHDC2Q9H6S0 1430 aaKnown RBP11.16□□□□□ -0.62
HMGA1P4-201ENST00000428643 LRPPRCP42704 1394 aaKnown RBP11.16□□□□□ -0.62
HMGA1P4-201ENST00000428643 TBX22Q9Y458 520 aa11.15□□□□□ -0.62
HMGA1P4-201ENST00000428643 HSPA5P11021 654 aaKnown RBP11.14□□□□□ -0.63
HMGA1P4-201ENST00000428643 TRAK1Q9UPV9 953 aa11.14□□□□□ -0.63
HMGA1P4-201ENST00000428643 SETD1AO15047 1707 aaKnown RBP11.14□□□□□ -0.63
HMGA1P4-201ENST00000428643 PIK3R4Q99570 1358 aa11.13□□□□□ -0.63
HMGA1P4-201ENST00000428643 HIRIP3Q9BW71 556 aaPredicted RBP11.12□□□□□ -0.63
HMGA1P4-201ENST00000428643 TECPR2O15040 1411 aa11.11□□□□□ -0.63
HMGA1P4-201ENST00000428643 PTPRUQ92729 1446 aa11.11□□□□□ -0.63
HMGA1P4-201ENST00000428643 ST20-MTHFSA0A0A6YYL1 179 aa11.11□□□□□ -0.63
HMGA1P4-201ENST00000428643 ABCC11Q96J66 1382 aa11.11□□□□□ -0.63
HMGA1P4-201ENST00000428643 CENPJQ9HC77 1338 aaPredicted RBP11.1□□□□□ -0.63
HMGA1P4-201ENST00000428643 CPS1P31327 1500 aa11.1□□□□□ -0.63
HMGA1P4-201ENST00000428643 PRAM1Q96QH2 718 aa11.1□□□□□ -0.63
HMGA1P4-201ENST00000428643 POGKQ9P215 609 aa11.1□□□□□ -0.63
HMGA1P4-201ENST00000428643 AMOTL2Q9Y2J4 779 aa11.1□□□□□ -0.63
HMGA1P4-201ENST00000428643 DMRT2Q9Y5R5 561 aa11.1□□□□□ -0.63
HMGA1P4-201ENST00000428643 STRCQ7RTU9 1775 aa11.1□□□□□ -0.63
HMGA1P4-201ENST00000428643 PTCH1Q13635 1447 aa11.09□□□□□ -0.63
HMGA1P4-201ENST00000428643 DLC1Q96QB1 1528 aa11.09□□□□□ -0.63
HMGA1P4-201ENST00000428643 ROBO2Q9HCK4 1378 aa11.09□□□□□ -0.63
HMGA1P4-201ENST00000428643 KCNA6P17658 529 aa11.09□□□□□ -0.63
HMGA1P4-201ENST00000428643 SAFB2Q14151 953 aaKnown RBP eCLIP11.09□□□□□ -0.63
HMGA1P4-201ENST00000428643 XRN1Q8IZH2 1706 aaKnown RBP11.09□□□□□ -0.63
HMGA1P4-201ENST00000428643 KNDC1Q76NI1 1749 aa11.08□□□□□ -0.64
HMGA1P4-201ENST00000428643 FAM135BQ49AJ0 1406 aa11.08□□□□□ -0.64
HMGA1P4-201ENST00000428643 NWD1Q149M9 1564 aa11.07□□□□□ -0.64
HMGA1P4-201ENST00000428643 NKTRP30414 1462 aaKnown RBP11.07□□□□□ -0.64
HMGA1P4-201ENST00000428643 ARHGEF28Q8N1W1 1705 aaKnown RBP11.07□□□□□ -0.64
HMGA1P4-201ENST00000428643 PLEKHH1Q9ULM0 1364 aa11.07□□□□□ -0.64
HMGA1P4-201ENST00000428643 WAPLQ7Z5K2 1190 aa11.07□□□□□ -0.64
HMGA1P4-201ENST00000428643 ZNF316A6NFI3 1004 aaPredicted RBP11.06□□□□□ -0.64
HMGA1P4-201ENST00000428643 MINK1Q8N4C8 1332 aaPredicted RBP11.06□□□□□ -0.64
HMGA1P4-201ENST00000428643 SBNO2Q9Y2G9 1366 aa11.05□□□□□ -0.64
HMGA1P4-201ENST00000428643 QRICH2Q9H0J4 1663 aa11.05□□□□□ -0.64
HMGA1P4-201ENST00000428643 SIRT1Q96EB6 747 aa11.05□□□□□ -0.64
Retrieved 100 of 20,778 RNA–protein pairs in 14.9 ms