RNA–Protein interactions for RNA: ENST00000428555.1

TRIM39-208, Transcript of tripartite motif containing 39, humanhuman

TSL 3

Gene TRIM39, Length 459 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM39-208ENST00000428555 IQGAP3Q86VI3 1631 aa14.2□□□□□ -0.14
TRIM39-208ENST00000428555 ADGRB3O60242 1522 aa14.2□□□□□ -0.14
TRIM39-208ENST00000428555 E9PCH4 1651 aa14.19□□□□□ -0.14
TRIM39-208ENST00000428555 ZFYVE9O95405 1425 aa14.18□□□□□ -0.14
TRIM39-208ENST00000428555 ZNF326Q5BKZ1 582 aaKnown RBP14.18□□□□□ -0.14
TRIM39-208ENST00000428555 PROSER2Q86WR7 435 aaPredicted RBP14.18□□□□□ -0.14
TRIM39-208ENST00000428555 RBM33Q96EV2 1170 aaKnown RBP14.18□□□□□ -0.14
TRIM39-208ENST00000428555 TBX22Q9Y458 520 aa14.18□□□□□ -0.14
TRIM39-208ENST00000428555 LRRC7Q96NW7 1537 aa14.18□□□□□ -0.14
TRIM39-208ENST00000428555 PLEKHG1Q9ULL1 1385 aa14.17□□□□□ -0.14
TRIM39-208ENST00000428555 GCC2Q8IWJ2 1684 aa14.17□□□□□ -0.14
TRIM39-208ENST00000428555 FOXD1Q16676 465 aa14.16□□□□□ -0.14
TRIM39-208ENST00000428555 KDM5AP29375 1690 aaKnown RBP14.15□□□□□ -0.14
TRIM39-208ENST00000428555 HSPA1LP34931 641 aa14.15□□□□□ -0.14
TRIM39-208ENST00000428555 TMEM131LA2VDJ0 1609 aa14.15□□□□□ -0.14
TRIM39-208ENST00000428555 MPHOSPH9Q99550 1183 aa14.14□□□□□ -0.15
TRIM39-208ENST00000428555 TMEM94Q12767 1356 aa14.13□□□□□ -0.15
TRIM39-208ENST00000428555 STRCP1A6NGW2 1772 aa14.12□□□□□ -0.15
TRIM39-208ENST00000428555 ADAMTS13Q76LX8 1427 aa14.09□□□□□ -0.15
TRIM39-208ENST00000428555 SETD5Q9C0A6 1442 aa14.09□□□□□ -0.15
TRIM39-208ENST00000428555 AMOTL2Q9Y2J4 779 aa14.09□□□□□ -0.15
TRIM39-208ENST00000428555 MYO5BQ9ULV0 1848 aa14.07□□□□□ -0.16
TRIM39-208ENST00000428555 ALKQ9UM73 1620 aa14.06□□□□□ -0.16
TRIM39-208ENST00000428555 VGFO15240 615 aaPredicted RBP14.06□□□□□ -0.16
TRIM39-208ENST00000428555 RGL3Q3MIN7 710 aa14.06□□□□□ -0.16
TRIM39-208ENST00000428555 DISP3Q9P2K9 1392 aa14.06□□□□□ -0.16
TRIM39-208ENST00000428555 TRPM2O94759 1503 aa14.05□□□□□ -0.16
TRIM39-208ENST00000428555 C14orf37Q86TY3 774 aa14.05□□□□□ -0.16
TRIM39-208ENST00000428555 RPGRIP1LQ68CZ1 1315 aa14.05□□□□□ -0.16
TRIM39-208ENST00000428555 ACIN1Q9UKV3 1341 aaKnown RBP14.05□□□□□ -0.16
TRIM39-208ENST00000428555 PIK3R4Q99570 1358 aa14.05□□□□□ -0.16
TRIM39-208ENST00000428555 SLAIN2Q9P270 581 aa14.04□□□□□ -0.16
TRIM39-208ENST00000428555 METP08581 1390 aa14.04□□□□□ -0.16
TRIM39-208ENST00000428555 RAB3GAP2Q9H2M9 1393 aa14.04□□□□□ -0.16
TRIM39-208ENST00000428555 PTPRUQ92729 1446 aa14.04□□□□□ -0.16
TRIM39-208ENST00000428555 CLTCL1P53675 1640 aa14.04□□□□□ -0.16
TRIM39-208ENST00000428555 SPHKAPQ2M3C7 1700 aa14.04□□□□□ -0.16
TRIM39-208ENST00000428555 MSH6P52701 1360 aa14.03□□□□□ -0.16
TRIM39-208ENST00000428555 NKTRP30414 1462 aaKnown RBP14.02□□□□□ -0.16
TRIM39-208ENST00000428555 C19orf44Q9H6X5 657 aa14.02□□□□□ -0.17
TRIM39-208ENST00000428555 CCDC144AA2RUR9 1427 aa14□□□□□ -0.17
TRIM39-208ENST00000428555 FAM135BQ49AJ0 1406 aa14□□□□□ -0.17
TRIM39-208ENST00000428555 ADGRF5Q8IZF2 1346 aa13.99□□□□□ -0.17
TRIM39-208ENST00000428555 ATF3P18847 181 aa13.99□□□□□ -0.17
TRIM39-208ENST00000428555 HRCP23327 699 aa13.99□□□□□ -0.17
TRIM39-208ENST00000428555 ILDR2Q71H61 639 aa13.99□□□□□ -0.17
TRIM39-208ENST00000428555 NWD1Q149M9 1564 aa13.99□□□□□ -0.17
TRIM39-208ENST00000428555 NCOA3Q9Y6Q9 1424 aa13.98□□□□□ -0.17
TRIM39-208ENST00000428555 CADPS2Q86UW7 1296 aa13.98□□□□□ -0.17
TRIM39-208ENST00000428555 NEXMIFQ5QGS0 1516 aa13.98□□□□□ -0.17
TRIM39-208ENST00000428555 CHD2O14647 1828 aaKnown RBP13.97□□□□□ -0.17
TRIM39-208ENST00000428555 XIRP1Q702N8 1843 aaKnown RBP13.97□□□□□ -0.17
TRIM39-208ENST00000428555 DIP2AQ14689 1571 aa13.96□□□□□ -0.17
TRIM39-208ENST00000428555 SETBP1Q9Y6X0 1596 aa13.96□□□□□ -0.17
TRIM39-208ENST00000428555 SPATA31E1Q6ZUB1 1445 aa13.96□□□□□ -0.18
TRIM39-208ENST00000428555 NRXN3Q9Y4C0 1643 aa13.93□□□□□ -0.18
TRIM39-208ENST00000428555 KIF1BO60333 1816 aa13.93□□□□□ -0.18
TRIM39-208ENST00000428555 TMEM132EQ6IEE7 984 aa13.93□□□□□ -0.18
TRIM39-208ENST00000428555 STK26Q9P289 416 aa13.93□□□□□ -0.18
TRIM39-208ENST00000428555 ANKRD30BQ9BXX2 1392 aa13.93□□□□□ -0.18
TRIM39-208ENST00000428555 PHF23Q9BUL5 403 aaPredicted RBP13.92□□□□□ -0.18
TRIM39-208ENST00000428555 ROBO2Q9HCK4 1378 aa13.91□□□□□ -0.18
TRIM39-208ENST00000428555 BRINP3Q76B58 766 aa13.9□□□□□ -0.18
TRIM39-208ENST00000428555 CFAP70Q5T0N1 1121 aa13.89□□□□□ -0.19
TRIM39-208ENST00000428555 WAPLQ7Z5K2 1190 aa13.89□□□□□ -0.19
TRIM39-208ENST00000428555 C14orf93Q9H972 538 aaKnown RBP13.89□□□□□ -0.19
TRIM39-208ENST00000428555 KDM2AQ9Y2K7 1162 aa13.89□□□□□ -0.19
TRIM39-208ENST00000428555 ROBO1Q9Y6N7 1651 aa13.86□□□□□ -0.19
TRIM39-208ENST00000428555 DCAF11Q8TEB1 546 aa13.86□□□□□ -0.19
TRIM39-208ENST00000428555 XRN1Q8IZH2 1706 aaKnown RBP13.86□□□□□ -0.19
TRIM39-208ENST00000428555 SIPA1L2Q9P2F8 1722 aaPredicted RBP13.85□□□□□ -0.19
TRIM39-208ENST00000428555 DCCP43146 1447 aa13.85□□□□□ -0.19
TRIM39-208ENST00000428555 ADGRL3Q9HAR2 1447 aa13.85□□□□□ -0.19
TRIM39-208ENST00000428555 DDX17Q92841 729 aaKnown RBP13.85□□□□□ -0.19
TRIM39-208ENST00000428555 LRPPRCP42704 1394 aaKnown RBP13.84□□□□□ -0.19
TRIM39-208ENST00000428555 ABCC11Q96J66 1382 aa13.84□□□□□ -0.19
TRIM39-208ENST00000428555 MED1Q15648 1581 aaPredicted RBP13.84□□□□□ -0.19
TRIM39-208ENST00000428555 MST1RQ04912 1400 aa13.84□□□□□ -0.19
TRIM39-208ENST00000428555 PTCH1Q13635 1447 aa13.84□□□□□ -0.19
TRIM39-208ENST00000428555 ORAI2Q96SN7 254 aa13.84□□□□□ -0.19
TRIM39-208ENST00000428555 RGS17Q9UGC6 210 aaPredicted RBP13.84□□□□□ -0.19
TRIM39-208ENST00000428555 PPLO60437 1756 aa13.83□□□□□ -0.19
TRIM39-208ENST00000428555 PIK3C2GO75747 1445 aa13.83□□□□□ -0.2
TRIM39-208ENST00000428555 SOCS7O14512 581 aa13.83□□□□□ -0.2
TRIM39-208ENST00000428555 JCADQ9P266 1359 aa13.83□□□□□ -0.2
TRIM39-208ENST00000428555 SIRT1Q96EB6 747 aa13.82□□□□□ -0.2
TRIM39-208ENST00000428555 NUTM2FA1L443 756 aa13.81□□□□□ -0.2
TRIM39-208ENST00000428555 DHX57Q6P158 1386 aaKnown RBP13.81□□□□□ -0.2
TRIM39-208ENST00000428555 PLEKHH1Q9ULM0 1364 aa13.81□□□□□ -0.2
TRIM39-208ENST00000428555 PRAG1Q86YV5 1406 aa13.81□□□□□ -0.2
TRIM39-208ENST00000428555 YTHDC2Q9H6S0 1430 aaKnown RBP13.81□□□□□ -0.2
TRIM39-208ENST00000428555 C1orf167Q5SNV9 1468 aa13.8□□□□□ -0.2
TRIM39-208ENST00000428555 ESCO1Q5FWF5 840 aa13.8□□□□□ -0.2
TRIM39-208ENST00000428555 LRRC59Q96AG4 307 aaKnown RBP13.8□□□□□ -0.2
TRIM39-208ENST00000428555 STAC3Q96MF2 364 aa13.8□□□□□ -0.2
TRIM39-208ENST00000428555 SETD1AO15047 1707 aaKnown RBP13.79□□□□□ -0.2
TRIM39-208ENST00000428555 SAFB2Q14151 953 aaKnown RBP eCLIP13.79□□□□□ -0.2
TRIM39-208ENST00000428555 PRAM1Q96QH2 718 aa13.79□□□□□ -0.2
TRIM39-208ENST00000428555 NRXN1Q9ULB1 1477 aa13.79□□□□□ -0.2
TRIM39-208ENST00000428555 NUTM2BA6NNL0 878 aaPredicted RBP13.78□□□□□ -0.2
Retrieved 100 of 20,778 RNA–protein pairs in 19.2 ms