RNA–Protein interactions for RNA: ENST00000425537.1

HMGB4-201, Transcript of high mobility group box 4, humanhuman

TSL 1 (best)

Gene HMGB4, Length 630 nt, Biotype processed transcript.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB4-201ENST00000425537 CCER2I3L3R5 266 aa13.12□□□□□ -0.31
HMGB4-201ENST00000425537 WASHC2AQ641Q2 1341 aa13.12□□□□□ -0.31
HMGB4-201ENST00000425537 KIAA1210Q9ULL0 1709 aa13.11□□□□□ -0.31
HMGB4-201ENST00000425537 NPATQ14207 1427 aa13.11□□□□□ -0.31
HMGB4-201ENST00000425537 PREX1Q8TCU6 1659 aa13.11□□□□□ -0.31
HMGB4-201ENST00000425537 RPGRIP1LQ68CZ1 1315 aa13.11□□□□□ -0.31
HMGB4-201ENST00000425537 MYOM2P54296 1465 aa13.1□□□□□ -0.31
HMGB4-201ENST00000425537 MYO3AQ8NEV4 1616 aa13.1□□□□□ -0.31
HMGB4-201ENST00000425537 SLC24A1O60721 1099 aa13.1□□□□□ -0.31
HMGB4-201ENST00000425537 HSPA2P54652 639 aa13.1□□□□□ -0.31
HMGB4-201ENST00000425537 ERVK-7P63135 1459 aa13.09□□□□□ -0.31
HMGB4-201ENST00000425537 NOS1P29475 1434 aa13.08□□□□□ -0.32
HMGB4-201ENST00000425537 KIF7Q2M1P5 1343 aa13.08□□□□□ -0.32
HMGB4-201ENST00000425537 ADGRB3O60242 1522 aa13.08□□□□□ -0.32
HMGB4-201ENST00000425537 TNRQ92752 1358 aa13.07□□□□□ -0.32
HMGB4-201ENST00000425537 UGGT1Q9NYU2 1555 aa13.07□□□□□ -0.32
HMGB4-201ENST00000425537 SLC52A1Q9NWF4 448 aa13.07□□□□□ -0.32
HMGB4-201ENST00000425537 SYNMO15061 1565 aa13.07□□□□□ -0.32
HMGB4-201ENST00000425537 EIF3AQ14152 1382 aaKnown RBP13.07□□□□□ -0.32
HMGB4-201ENST00000425537 LMTK3Q96Q04 1460 aa13.06□□□□□ -0.32
HMGB4-201ENST00000425537 IFT172Q9UG01 1749 aa13.06□□□□□ -0.32
HMGB4-201ENST00000425537 SPATA31D1Q6ZQQ2 1576 aa13.05□□□□□ -0.32
HMGB4-201ENST00000425537 PIK3C2BO00750 1634 aa13.05□□□□□ -0.32
HMGB4-201ENST00000425537 ST20-MTHFSA0A0A6YYL1 179 aa13.04□□□□□ -0.32
HMGB4-201ENST00000425537 CEP170BQ9Y4F5 1589 aaPredicted RBP13.03□□□□□ -0.32
HMGB4-201ENST00000425537 CHGAP10645 457 aaKnown RBP13.03□□□□□ -0.32
HMGB4-201ENST00000425537 CDCA8Q53HL2 280 aa13.03□□□□□ -0.32
HMGB4-201ENST00000425537 YTHDC1Q96MU7 727 aaKnown RBP13.03□□□□□ -0.32
HMGB4-201ENST00000425537 SCAF11Q99590 1463 aaKnown RBP13.03□□□□□ -0.32
HMGB4-201ENST00000425537 NRXN1Q9ULB1 1477 aa13.02□□□□□ -0.33
HMGB4-201ENST00000425537 IQGAP1P46940 1657 aa13.02□□□□□ -0.33
HMGB4-201ENST00000425537 ZNF142P52746 1687 aaPredicted RBP13.02□□□□□ -0.33
HMGB4-201ENST00000425537 PPLO60437 1756 aa13.02□□□□□ -0.33
HMGB4-201ENST00000425537 C11orf95C9JLR9 678 aaPredicted RBP13.01□□□□□ -0.33
HMGB4-201ENST00000425537 VGFO15240 615 aaPredicted RBP13.01□□□□□ -0.33
HMGB4-201ENST00000425537 TMF1P82094 1093 aa13.01□□□□□ -0.33
HMGB4-201ENST00000425537 NBPF1Q3BBV0 1214 aa13.01□□□□□ -0.33
HMGB4-201ENST00000425537 MYO5BQ9ULV0 1848 aa13□□□□□ -0.33
HMGB4-201ENST00000425537 SETBP1Q9Y6X0 1596 aa13□□□□□ -0.33
HMGB4-201ENST00000425537 A2ML1A8K2U0 1454 aa12.99□□□□□ -0.33
HMGB4-201ENST00000425537 KTN1Q86UP2 1357 aaKnown RBP12.99□□□□□ -0.33
HMGB4-201ENST00000425537 POTEDQ86YR6 584 aa12.98□□□□□ -0.33
HMGB4-201ENST00000425537 POLR3GLQ9BT43 218 aa12.98□□□□□ -0.33
HMGB4-201ENST00000425537 UBR1Q8IWV7 1749 aa12.98□□□□□ -0.33
HMGB4-201ENST00000425537 ZFYVE9O95405 1425 aa12.97□□□□□ -0.33
HMGB4-201ENST00000425537 SETD1BQ9UPS6 1966 aaKnown RBP12.97□□□□□ -0.33
HMGB4-201ENST00000425537 NCKAP5LQ9HCH0 1330 aa12.96□□□□□ -0.33
HMGB4-201ENST00000425537 IDI1Q13907 227 aa12.96□□□□□ -0.33
HMGB4-201ENST00000425537 PRKRIP1Q9H875 184 aaPredicted RBP12.95□□□□□ -0.34
HMGB4-201ENST00000425537 STAG3Q9UJ98 1225 aa12.95□□□□□ -0.34
HMGB4-201ENST00000425537 NLRP1Q9C000 1473 aa12.95□□□□□ -0.34
HMGB4-201ENST00000425537 PIK3C2GO75747 1445 aa12.95□□□□□ -0.34
HMGB4-201ENST00000425537 STRCQ7RTU9 1775 aa12.94□□□□□ -0.34
HMGB4-201ENST00000425537 ADGRF5Q8IZF2 1346 aa12.94□□□□□ -0.34
HMGB4-201ENST00000425537 NUTM2DQ5VT03 806 aaPredicted RBP12.94□□□□□ -0.34
HMGB4-201ENST00000425537 TESK2Q96S53 571 aa12.94□□□□□ -0.34
HMGB4-201ENST00000425537 TMEM131LA2VDJ0 1609 aa12.94□□□□□ -0.34
HMGB4-201ENST00000425537 NEXMIFQ5QGS0 1516 aa12.93□□□□□ -0.34
HMGB4-201ENST00000425537 C14orf93Q9H972 538 aaKnown RBP12.93□□□□□ -0.34
HMGB4-201ENST00000425537 HDGFP51858 240 aaKnown RBP12.92□□□□□ -0.34
HMGB4-201ENST00000425537 CFAP70Q5T0N1 1121 aa12.92□□□□□ -0.34
HMGB4-201ENST00000425537 SBNO2Q9Y2G9 1366 aa12.92□□□□□ -0.34
HMGB4-201ENST00000425537 RALBP1Q15311 655 aa12.91□□□□□ -0.34
HMGB4-201ENST00000425537 KDM5AP29375 1690 aaKnown RBP12.89□□□□□ -0.35
HMGB4-201ENST00000425537 ABCF1Q8NE71 845 aaKnown RBP eCLIP12.89□□□□□ -0.35
HMGB4-201ENST00000425537 DISP3Q9P2K9 1392 aa12.89□□□□□ -0.35
HMGB4-201ENST00000425537 CENPJQ9HC77 1338 aaPredicted RBP12.88□□□□□ -0.35
HMGB4-201ENST00000425537 LTKP29376 864 aa12.87□□□□□ -0.35
HMGB4-201ENST00000425537 THEMISQ8N1K5 641 aaPredicted RBP12.87□□□□□ -0.35
HMGB4-201ENST00000425537 MRS2Q9HD23 443 aa12.87□□□□□ -0.35
HMGB4-201ENST00000425537 RIMS2Q9UQ26 1411 aa12.87□□□□□ -0.35
HMGB4-201ENST00000425537 ADGRB1O14514 1584 aa12.86□□□□□ -0.35
HMGB4-201ENST00000425537 TMEM2Q9UHN6 1383 aa12.85□□□□□ -0.35
HMGB4-201ENST00000425537 TXNDC2Q86VQ3 553 aa12.85□□□□□ -0.35
HMGB4-201ENST00000425537 PUS7Q96PZ0 661 aaKnown RBP12.85□□□□□ -0.35
HMGB4-201ENST00000425537 MYBBP1AQ9BQG0 1328 aaKnown RBP12.85□□□□□ -0.35
HMGB4-201ENST00000425537 ARHGAP23Q9P227 1491 aa12.85□□□□□ -0.35
HMGB4-201ENST00000425537 SLIT1O75093 1534 aa12.84□□□□□ -0.35
HMGB4-201ENST00000425537 BCANQ96GW7 911 aa12.84□□□□□ -0.35
HMGB4-201ENST00000425537 QRICH2Q9H0J4 1663 aa12.83□□□□□ -0.35
HMGB4-201ENST00000425537 BRD4O60885 1362 aaPredicted RBP12.83□□□□□ -0.36
HMGB4-201ENST00000425537 NPHP4O75161 1426 aaPredicted RBP12.83□□□□□ -0.36
HMGB4-201ENST00000425537 ANKLE2Q86XL3 938 aa12.83□□□□□ -0.36
HMGB4-201ENST00000425537 KNSTRNQ9Y448 316 aa12.83□□□□□ -0.36
HMGB4-201ENST00000425537 TMC1Q8TDI8 760 aa12.82□□□□□ -0.36
HMGB4-201ENST00000425537 PANK3Q9H999 370 aa12.82□□□□□ -0.36
HMGB4-201ENST00000425537 TRAK1Q9UPV9 953 aa12.81□□□□□ -0.36
HMGB4-201ENST00000425537 EID1Q9Y6B2 187 aa12.81□□□□□ -0.36
HMGB4-201ENST00000425537 EVC2Q86UK5 1308 aa12.81□□□□□ -0.36
HMGB4-201ENST00000425537 PARD3Q8TEW0 1356 aa12.81□□□□□ -0.36
HMGB4-201ENST00000425537 NPC1L1Q9UHC9 1359 aa12.81□□□□□ -0.36
HMGB4-201ENST00000425537 ARHGEF28Q8N1W1 1705 aaKnown RBP12.8□□□□□ -0.36
HMGB4-201ENST00000425537 PER1O15534 1290 aaPredicted RBP12.8□□□□□ -0.36
HMGB4-201ENST00000425537 SLC26A8Q96RN1 970 aa12.8□□□□□ -0.36
HMGB4-201ENST00000425537 ALKQ9UM73 1620 aa12.8□□□□□ -0.36
HMGB4-201ENST00000425537 NLRP13Q86W25 1043 aa12.79□□□□□ -0.36
HMGB4-201ENST00000425537 ZNF335Q9H4Z2 1342 aaPredicted RBP12.79□□□□□ -0.36
HMGB4-201ENST00000425537 MYOM1P52179 1685 aa12.78□□□□□ -0.36
HMGB4-201ENST00000425537 HNRNPUQ00839 825 aaKnown RBP eCLIP12.78□□□□□ -0.36
HMGB4-201ENST00000425537 TMEM132EQ6IEE7 984 aa12.78□□□□□ -0.36
Retrieved 100 of 20,778 RNA–protein pairs in 24.9 ms