RNA–Protein interactions for RNA: ENST00000423575.5

LINC00539-202, long intergenic non-protein coding RNA 539, humanhuman

TSL 3 BASIC

Gene LINC00539, Length 699 nt, Biotype lincRNA.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00539-202ENST00000423575 NEXMIFQ5QGS0 1516 aa17.6■□□□□ 0.41
LINC00539-202ENST00000423575 LTKP29376 864 aa17.59■□□□□ 0.41
LINC00539-202ENST00000423575 NCKAP5LQ9HCH0 1330 aa17.58■□□□□ 0.4
LINC00539-202ENST00000423575 NUTM2DQ5VT03 806 aaPredicted RBP17.58■□□□□ 0.4
LINC00539-202ENST00000423575 TXNDC2Q86VQ3 553 aa17.58■□□□□ 0.4
LINC00539-202ENST00000423575 ANKLE2Q86XL3 938 aa17.58■□□□□ 0.4
LINC00539-202ENST00000423575 RPGRIP1LQ68CZ1 1315 aa17.57■□□□□ 0.4
LINC00539-202ENST00000423575 EID1Q9Y6B2 187 aa17.56■□□□□ 0.4
LINC00539-202ENST00000423575 ABCF1Q8NE71 845 aaKnown RBP eCLIP17.55■□□□□ 0.4
LINC00539-202ENST00000423575 STRCQ7RTU9 1775 aa17.54■□□□□ 0.4
LINC00539-202ENST00000423575 PPP1R15AO75807 674 aaPredicted RBP17.54■□□□□ 0.4
LINC00539-202ENST00000423575 MED14O60244 1454 aa17.54■□□□□ 0.4
LINC00539-202ENST00000423575 NPHP4O75161 1426 aaPredicted RBP17.54■□□□□ 0.4
LINC00539-202ENST00000423575 PPLO60437 1756 aa17.53■□□□□ 0.4
LINC00539-202ENST00000423575 POLR1AO95602 1720 aaPredicted RBP17.53■□□□□ 0.4
LINC00539-202ENST00000423575 HDGFP51858 240 aaKnown RBP17.53■□□□□ 0.4
LINC00539-202ENST00000423575 PLEKHG1Q9ULL1 1385 aa17.53■□□□□ 0.4
LINC00539-202ENST00000423575 IFT172Q9UG01 1749 aa17.52■□□□□ 0.4
LINC00539-202ENST00000423575 MYOM2P54296 1465 aa17.52■□□□□ 0.4
LINC00539-202ENST00000423575 L3MBTL2Q969R5 705 aa17.52■□□□□ 0.4
LINC00539-202ENST00000423575 ADGRF5Q8IZF2 1346 aa17.51■□□□□ 0.39
LINC00539-202ENST00000423575 DCAF11Q8TEB1 546 aa17.51■□□□□ 0.39
LINC00539-202ENST00000423575 SENP3Q9H4L4 574 aaPredicted RBP17.51■□□□□ 0.39
LINC00539-202ENST00000423575 TONSLQ96HA7 1378 aa17.51■□□□□ 0.39
LINC00539-202ENST00000423575 VGFO15240 615 aaPredicted RBP17.5■□□□□ 0.39
LINC00539-202ENST00000423575 NRXN1Q9ULB1 1477 aa17.5■□□□□ 0.39
LINC00539-202ENST00000423575 KDM2AQ9Y2K7 1162 aa17.48■□□□□ 0.39
LINC00539-202ENST00000423575 SETBP1Q9Y6X0 1596 aa17.48■□□□□ 0.39
LINC00539-202ENST00000423575 IQGAP1P46940 1657 aa17.48■□□□□ 0.39
LINC00539-202ENST00000423575 PIK3C2GO75747 1445 aa17.47■□□□□ 0.39
LINC00539-202ENST00000423575 ADAMTS13Q76LX8 1427 aa17.47■□□□□ 0.39
LINC00539-202ENST00000423575 NRXN3Q9Y4C0 1643 aa17.47■□□□□ 0.39
LINC00539-202ENST00000423575 BCANQ96GW7 911 aa17.45■□□□□ 0.38
LINC00539-202ENST00000423575 STAC3Q96MF2 364 aa17.45■□□□□ 0.38
LINC00539-202ENST00000423575 SLC26A8Q96RN1 970 aa17.45■□□□□ 0.38
LINC00539-202ENST00000423575 PRAG1Q86YV5 1406 aa17.44■□□□□ 0.38
LINC00539-202ENST00000423575 DMRT2Q9Y5R5 561 aa17.43■□□□□ 0.38
LINC00539-202ENST00000423575 DIP2AQ14689 1571 aa17.42■□□□□ 0.38
LINC00539-202ENST00000423575 TIMELESSQ9UNS1 1208 aa17.42■□□□□ 0.38
LINC00539-202ENST00000423575 ALKQ9UM73 1620 aa17.41■□□□□ 0.38
LINC00539-202ENST00000423575 TBX22Q9Y458 520 aa17.41■□□□□ 0.38
LINC00539-202ENST00000423575 METP08581 1390 aa17.4■□□□□ 0.38
LINC00539-202ENST00000423575 SETD1AO15047 1707 aaKnown RBP17.39■□□□□ 0.37
LINC00539-202ENST00000423575 ASXL1Q8IXJ9 1541 aa17.39■□□□□ 0.37
LINC00539-202ENST00000423575 NBPF8Q3BBV2 869 aa17.39■□□□□ 0.37
LINC00539-202ENST00000423575 CFAP70Q5T0N1 1121 aa17.39■□□□□ 0.37
LINC00539-202ENST00000423575 C14orf93Q9H972 538 aaKnown RBP17.39■□□□□ 0.37
LINC00539-202ENST00000423575 LAMC1P11047 1609 aa17.36■□□□□ 0.37
LINC00539-202ENST00000423575 ZNF335Q9H4Z2 1342 aaPredicted RBP17.36■□□□□ 0.37
LINC00539-202ENST00000423575 PTPRUQ92729 1446 aa17.36■□□□□ 0.37
LINC00539-202ENST00000423575 PIK3R4Q99570 1358 aa17.35■□□□□ 0.37
LINC00539-202ENST00000423575 ADGRB1O14514 1584 aa17.35■□□□□ 0.37
LINC00539-202ENST00000423575 NWD1Q149M9 1564 aa17.33■□□□□ 0.37
LINC00539-202ENST00000423575 TMEM132EQ6IEE7 984 aa17.33■□□□□ 0.36
LINC00539-202ENST00000423575 KCNA6P17658 529 aa17.32■□□□□ 0.36
LINC00539-202ENST00000423575 NBPF1Q3BBV0 1214 aa17.32■□□□□ 0.36
LINC00539-202ENST00000423575 KIAA1210Q9ULL0 1709 aa17.32■□□□□ 0.36
LINC00539-202ENST00000423575 TRPM1Q7Z4N2 1603 aa17.32■□□□□ 0.36
LINC00539-202ENST00000423575 RALGAPBQ86X10 1494 aa17.31■□□□□ 0.36
LINC00539-202ENST00000423575 YTHDC2Q9H6S0 1430 aaKnown RBP17.3■□□□□ 0.36
LINC00539-202ENST00000423575 XRN1Q8IZH2 1706 aaKnown RBP17.3■□□□□ 0.36
LINC00539-202ENST00000423575 LRPPRCP42704 1394 aaKnown RBP17.3■□□□□ 0.36
LINC00539-202ENST00000423575 AMOTL2Q9Y2J4 779 aa17.3■□□□□ 0.36
LINC00539-202ENST00000423575 STRCP1A6NGW2 1772 aa17.29■□□□□ 0.36
LINC00539-202ENST00000423575 LTBP4Q8N2S1 1624 aa17.29■□□□□ 0.36
LINC00539-202ENST00000423575 ROCK2O75116 1388 aaKnown RBP17.28■□□□□ 0.36
LINC00539-202ENST00000423575 GPRASP1Q5JY77 1395 aa17.28■□□□□ 0.36
LINC00539-202ENST00000423575 STK26Q9P289 416 aa17.28■□□□□ 0.36
LINC00539-202ENST00000423575 NKTRP30414 1462 aaKnown RBP17.28■□□□□ 0.36
LINC00539-202ENST00000423575 TECPR2O15040 1411 aa17.28■□□□□ 0.36
LINC00539-202ENST00000423575 CHD2O14647 1828 aaKnown RBP17.28■□□□□ 0.36
LINC00539-202ENST00000423575 ABCC11Q96J66 1382 aa17.28■□□□□ 0.36
LINC00539-202ENST00000423575 ROBO2Q9HCK4 1378 aa17.27■□□□□ 0.35
LINC00539-202ENST00000423575 PTCH1Q13635 1447 aa17.26■□□□□ 0.35
LINC00539-202ENST00000423575 CPS1P31327 1500 aa17.25■□□□□ 0.35
LINC00539-202ENST00000423575 TRAK1Q9UPV9 953 aa17.24■□□□□ 0.35
LINC00539-202ENST00000423575 KNDC1Q76NI1 1749 aa17.24■□□□□ 0.35
LINC00539-202ENST00000423575 LRRC7Q96NW7 1537 aa17.23■□□□□ 0.35
LINC00539-202ENST00000423575 DLC1Q96QB1 1528 aa17.23■□□□□ 0.35
LINC00539-202ENST00000423575 RBM33Q96EV2 1170 aaKnown RBP17.22■□□□□ 0.35
LINC00539-202ENST00000423575 CARD11Q9BXL7 1154 aa17.22■□□□□ 0.35
LINC00539-202ENST00000423575 TMEM94Q12767 1356 aa17.21■□□□□ 0.35
LINC00539-202ENST00000423575 PLEKHH1Q9ULM0 1364 aa17.21■□□□□ 0.35
LINC00539-202ENST00000423575 PROSER2Q86WR7 435 aaPredicted RBP17.21■□□□□ 0.35
LINC00539-202ENST00000423575 FAM135BQ49AJ0 1406 aa17.21■□□□□ 0.34
LINC00539-202ENST00000423575 WAPLQ7Z5K2 1190 aa17.19■□□□□ 0.34
LINC00539-202ENST00000423575 SIRT1Q96EB6 747 aa17.19■□□□□ 0.34
LINC00539-202ENST00000423575 PRAM1Q96QH2 718 aa17.19■□□□□ 0.34
LINC00539-202ENST00000423575 ARHGEF28Q8N1W1 1705 aaKnown RBP17.18■□□□□ 0.34
LINC00539-202ENST00000423575 ZEB1P37275 1124 aaPredicted RBP17.16■□□□□ 0.34
LINC00539-202ENST00000423575 ADGRL3Q9HAR2 1447 aa17.15■□□□□ 0.34
LINC00539-202ENST00000423575 NCOA3Q9Y6Q9 1424 aa17.15■□□□□ 0.34
LINC00539-202ENST00000423575 SAFB2Q14151 953 aaKnown RBP eCLIP17.15■□□□□ 0.34
LINC00539-202ENST00000423575 POGKQ9P215 609 aa17.15■□□□□ 0.34
LINC00539-202ENST00000423575 EIF3AQ14152 1382 aaKnown RBP17.15■□□□□ 0.34
LINC00539-202ENST00000423575 USP47Q96K76 1375 aa17.15■□□□□ 0.34
LINC00539-202ENST00000423575 CENPJQ9HC77 1338 aaPredicted RBP17.14■□□□□ 0.33
LINC00539-202ENST00000423575 XIRP1Q702N8 1843 aaKnown RBP17.14■□□□□ 0.33
LINC00539-202ENST00000423575 C14orf37Q86TY3 774 aa17.13■□□□□ 0.33
LINC00539-202ENST00000423575 CERKQ8TCT0 537 aa17.13■□□□□ 0.33
Retrieved 100 of 20,778 RNA–protein pairs in 23.8 ms