RNA–Protein interactions for RNA: ENST00000422991.1

COL7A1-202, Transcript of collagen type VII alpha 1 chain, humanhuman

TSL 5

Gene COL7A1, Length 597 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL7A1-202ENST00000422991 RIMS2Q9UQ26 1411 aa24.76■■□□□ 1.55
COL7A1-202ENST00000422991 CCER1Q8TC90 406 aaPredicted RBP24.75■■□□□ 1.55
COL7A1-202ENST00000422991 SIN3AQ96ST3 1273 aa24.74■■□□□ 1.55
COL7A1-202ENST00000422991 SCAF11Q99590 1463 aaKnown RBP24.74■■□□□ 1.55
COL7A1-202ENST00000422991 ZNF326Q5BKZ1 582 aaKnown RBP24.72■■□□□ 1.55
COL7A1-202ENST00000422991 NCKAP5LQ9HCH0 1330 aa24.7■■□□□ 1.54
COL7A1-202ENST00000422991 RPGRIP1LQ68CZ1 1315 aa24.69■■□□□ 1.54
COL7A1-202ENST00000422991 RGL3Q3MIN7 710 aa24.69■■□□□ 1.54
COL7A1-202ENST00000422991 LTKP29376 864 aa24.68■■□□□ 1.54
COL7A1-202ENST00000422991 FBXO41Q8TF61 875 aa24.68■■□□□ 1.54
COL7A1-202ENST00000422991 MED14O60244 1454 aa24.68■■□□□ 1.54
COL7A1-202ENST00000422991 IQGAP1P46940 1657 aa24.67■■□□□ 1.54
COL7A1-202ENST00000422991 NEUROD1Q13562 356 aa24.67■■□□□ 1.54
COL7A1-202ENST00000422991 ANKLE2Q86XL3 938 aa24.67■■□□□ 1.54
COL7A1-202ENST00000422991 CERKQ8TCT0 537 aa24.67■■□□□ 1.54
COL7A1-202ENST00000422991 ABCF1Q8NE71 845 aaKnown RBP eCLIP24.66■■□□□ 1.54
COL7A1-202ENST00000422991 EID1Q9Y6B2 187 aa24.66■■□□□ 1.54
COL7A1-202ENST00000422991 MYOM2P54296 1465 aa24.65■■□□□ 1.54
COL7A1-202ENST00000422991 TXNDC2Q86VQ3 553 aa24.65■■□□□ 1.54
COL7A1-202ENST00000422991 HDGFP51858 240 aaKnown RBP24.63■■□□□ 1.53
COL7A1-202ENST00000422991 PLEKHG1Q9ULL1 1385 aa24.63■■□□□ 1.53
COL7A1-202ENST00000422991 NPHP4O75161 1426 aaPredicted RBP24.62■■□□□ 1.53
COL7A1-202ENST00000422991 NRXN3Q9Y4C0 1643 aa24.62■■□□□ 1.53
COL7A1-202ENST00000422991 NUTM2DQ5VT03 806 aaPredicted RBP24.62■■□□□ 1.53
COL7A1-202ENST00000422991 SETBP1Q9Y6X0 1596 aa24.62■■□□□ 1.53
COL7A1-202ENST00000422991 PPP1R15AO75807 674 aaPredicted RBP24.61■■□□□ 1.53
COL7A1-202ENST00000422991 NRXN1Q9ULB1 1477 aa24.61■■□□□ 1.53
COL7A1-202ENST00000422991 TONSLQ96HA7 1378 aa24.58■■□□□ 1.53
COL7A1-202ENST00000422991 VGFO15240 615 aaPredicted RBP24.58■■□□□ 1.53
COL7A1-202ENST00000422991 LTBP4Q8N2S1 1624 aa24.57■■□□□ 1.52
COL7A1-202ENST00000422991 L3MBTL2Q969R5 705 aa24.57■■□□□ 1.52
COL7A1-202ENST00000422991 DIP2AQ14689 1571 aa24.57■■□□□ 1.52
COL7A1-202ENST00000422991 SETD1AO15047 1707 aaKnown RBP24.56■■□□□ 1.52
COL7A1-202ENST00000422991 PIK3C2GO75747 1445 aa24.56■■□□□ 1.52
COL7A1-202ENST00000422991 DCAF11Q8TEB1 546 aa24.56■■□□□ 1.52
COL7A1-202ENST00000422991 ADGRF5Q8IZF2 1346 aa24.56■■□□□ 1.52
COL7A1-202ENST00000422991 ADAMTS13Q76LX8 1427 aa24.54■■□□□ 1.52
COL7A1-202ENST00000422991 STAC3Q96MF2 364 aa24.54■■□□□ 1.52
COL7A1-202ENST00000422991 LAMC1P11047 1609 aa24.53■■□□□ 1.52
COL7A1-202ENST00000422991 ALKQ9UM73 1620 aa24.51■■□□□ 1.51
COL7A1-202ENST00000422991 KDM2AQ9Y2K7 1162 aa24.51■■□□□ 1.51
COL7A1-202ENST00000422991 PRAG1Q86YV5 1406 aa24.51■■□□□ 1.51
COL7A1-202ENST00000422991 SENP3Q9H4L4 574 aaPredicted RBP24.5■■□□□ 1.51
COL7A1-202ENST00000422991 ZNF335Q9H4Z2 1342 aaPredicted RBP24.5■■□□□ 1.51
COL7A1-202ENST00000422991 IQSEC2Q5JU85 1478 aa24.48■■□□□ 1.51
COL7A1-202ENST00000422991 KIAA1210Q9ULL0 1709 aa24.48■■□□□ 1.51
COL7A1-202ENST00000422991 TIMELESSQ9UNS1 1208 aa24.48■■□□□ 1.51
COL7A1-202ENST00000422991 BCANQ96GW7 911 aa24.47■■□□□ 1.51
COL7A1-202ENST00000422991 SLC26A8Q96RN1 970 aa24.45■■□□□ 1.5
COL7A1-202ENST00000422991 TRPM1Q7Z4N2 1603 aa24.45■■□□□ 1.5
COL7A1-202ENST00000422991 ASXL1Q8IXJ9 1541 aa24.45■■□□□ 1.5
COL7A1-202ENST00000422991 TBX22Q9Y458 520 aa24.44■■□□□ 1.5
COL7A1-202ENST00000422991 CHD2O14647 1828 aaKnown RBP24.43■■□□□ 1.5
COL7A1-202ENST00000422991 NWD1Q149M9 1564 aa24.42■■□□□ 1.5
COL7A1-202ENST00000422991 STRCP1A6NGW2 1772 aa24.41■■□□□ 1.5
COL7A1-202ENST00000422991 XRN1Q8IZH2 1706 aaKnown RBP24.41■■□□□ 1.5
COL7A1-202ENST00000422991 C14orf93Q9H972 538 aaKnown RBP24.4■■□□□ 1.5
COL7A1-202ENST00000422991 ADGRB1O14514 1584 aa24.4■■□□□ 1.5
COL7A1-202ENST00000422991 METP08581 1390 aa24.4■■□□□ 1.5
COL7A1-202ENST00000422991 PIK3R4Q99570 1358 aa24.4■■□□□ 1.5
COL7A1-202ENST00000422991 CFAP70Q5T0N1 1121 aa24.38■■□□□ 1.49
COL7A1-202ENST00000422991 CPS1P31327 1500 aa24.38■■□□□ 1.49
COL7A1-202ENST00000422991 NBPF8Q3BBV2 869 aa24.37■■□□□ 1.49
COL7A1-202ENST00000422991 PTPRUQ92729 1446 aa24.36■■□□□ 1.49
COL7A1-202ENST00000422991 KNDC1Q76NI1 1749 aa24.36■■□□□ 1.49
COL7A1-202ENST00000422991 RALGAPBQ86X10 1494 aa24.35■■□□□ 1.49
COL7A1-202ENST00000422991 NKTRP30414 1462 aaKnown RBP24.32■■□□□ 1.48
COL7A1-202ENST00000422991 YTHDC2Q9H6S0 1430 aaKnown RBP24.31■■□□□ 1.48
COL7A1-202ENST00000422991 KCNA6P17658 529 aa24.3■■□□□ 1.48
COL7A1-202ENST00000422991 TMEM132EQ6IEE7 984 aa24.3■■□□□ 1.48
COL7A1-202ENST00000422991 LRPPRCP42704 1394 aaKnown RBP24.29■■□□□ 1.48
COL7A1-202ENST00000422991 TECPR2O15040 1411 aa24.29■■□□□ 1.48
COL7A1-202ENST00000422991 NBPF1Q3BBV0 1214 aa24.28■■□□□ 1.48
COL7A1-202ENST00000422991 GPRASP1Q5JY77 1395 aa24.28■■□□□ 1.48
COL7A1-202ENST00000422991 PTCH1Q13635 1447 aa24.27■■□□□ 1.48
COL7A1-202ENST00000422991 AMOTL2Q9Y2J4 779 aa24.27■■□□□ 1.48
COL7A1-202ENST00000422991 ROCK2O75116 1388 aaKnown RBP24.27■■□□□ 1.48
COL7A1-202ENST00000422991 ARHGEF28Q8N1W1 1705 aaKnown RBP24.27■■□□□ 1.48
COL7A1-202ENST00000422991 DLC1Q96QB1 1528 aa24.25■■□□□ 1.47
COL7A1-202ENST00000422991 UBAP1LF5GYI3 381 aa24.25■■□□□ 1.47
COL7A1-202ENST00000422991 ABCC11Q96J66 1382 aa24.25■■□□□ 1.47
COL7A1-202ENST00000422991 XIRP1Q702N8 1843 aaKnown RBP24.24■■□□□ 1.47
COL7A1-202ENST00000422991 LRRC7Q96NW7 1537 aa24.22■■□□□ 1.47
COL7A1-202ENST00000422991 ROBO2Q9HCK4 1378 aa24.22■■□□□ 1.47
COL7A1-202ENST00000422991 STK26Q9P289 416 aa24.22■■□□□ 1.47
COL7A1-202ENST00000422991 FAM135BQ49AJ0 1406 aa24.19■■□□□ 1.46
COL7A1-202ENST00000422991 NALCNQ8IZF0 1738 aa24.17■■□□□ 1.46
COL7A1-202ENST00000422991 TOM1O60784 492 aa24.16■■□□□ 1.46
COL7A1-202ENST00000422991 CARD11Q9BXL7 1154 aa24.16■■□□□ 1.46
COL7A1-202ENST00000422991 TRAK1Q9UPV9 953 aa24.16■■□□□ 1.46
COL7A1-202ENST00000422991 TMEM94Q12767 1356 aa24.16■■□□□ 1.46
COL7A1-202ENST00000422991 PROSER2Q86WR7 435 aaPredicted RBP24.15■■□□□ 1.46
COL7A1-202ENST00000422991 SIRT1Q96EB6 747 aa24.15■■□□□ 1.46
COL7A1-202ENST00000422991 PLEKHH1Q9ULM0 1364 aa24.14■■□□□ 1.45
COL7A1-202ENST00000422991 SIPA1L2Q9P2F8 1722 aaPredicted RBP24.13■■□□□ 1.45
COL7A1-202ENST00000422991 NCOA3Q9Y6Q9 1424 aa24.13■■□□□ 1.45
COL7A1-202ENST00000422991 QRICH2Q9H0J4 1663 aa24.13■■□□□ 1.45
COL7A1-202ENST00000422991 ZEB1P37275 1124 aaPredicted RBP24.11■■□□□ 1.45
COL7A1-202ENST00000422991 PRAM1Q96QH2 718 aa24.11■■□□□ 1.45
COL7A1-202ENST00000422991 EIF3AQ14152 1382 aaKnown RBP24.11■■□□□ 1.45
Retrieved 100 of 20,778 RNA–protein pairs in 90.3 ms