RNA–Protein interactions for RNA: ENST00000422344.5

TRAF4-204, Transcript of TNF receptor associated factor 4, human

TSL 3

Gene TRAF4, Length 631 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
TRAF4-204	ENST00000422344	XIRP1	Q702N8	1843 aa	Known RBP	33.04	■■■□□ 2.88
TRAF4-204	ENST00000422344		E9PCH4	1651 aa		33.04	■■■□□ 2.88
TRAF4-204	ENST00000422344	ADGRB3	O60242	1522 aa		33.02	■■■□□ 2.88
TRAF4-204	ENST00000422344	HFM1	A2PYH4	1435 aa		32.99	■■■□□ 2.87
TRAF4-204	ENST00000422344	SLC26A8	Q96RN1	970 aa		32.93	■■■□□ 2.86
TRAF4-204	ENST00000422344	KCNA6	P17658	529 aa		32.91	■■■□□ 2.86
TRAF4-204	ENST00000422344	TMEM94	Q12767	1356 aa		32.91	■■■□□ 2.86
TRAF4-204	ENST00000422344	CHGA	P10645	457 aa	Known RBP	32.9	■■■□□ 2.86
TRAF4-204	ENST00000422344	TRIM52	Q96A61	297 aa		32.9	■■■□□ 2.86
TRAF4-204	ENST00000422344	PROSER2	Q86WR7	435 aa	Predicted RBP	32.87	■■■□□ 2.85
TRAF4-204	ENST00000422344	FAM135B	Q49AJ0	1406 aa		32.86	■■■□□ 2.85
TRAF4-204	ENST00000422344	RBM33	Q96EV2	1170 aa	Known RBP	32.86	■■■□□ 2.85
TRAF4-204	ENST00000422344	TMEM131L	A2VDJ0	1609 aa		32.85	■■■□□ 2.85
TRAF4-204	ENST00000422344	BCAN	Q96GW7	911 aa		32.84	■■■□□ 2.85
TRAF4-204	ENST00000422344	HDGF	P51858	240 aa	Known RBP	32.83	■■■□□ 2.85
TRAF4-204	ENST00000422344	MYO5B	Q9ULV0	1848 aa		32.83	■■■□□ 2.85
TRAF4-204	ENST00000422344	SPHKAP	Q2M3C7	1700 aa		32.82	■■■□□ 2.85
TRAF4-204	ENST00000422344	RGS17	Q9UGC6	210 aa	Predicted RBP	32.82	■■■□□ 2.84
TRAF4-204	ENST00000422344	PPP1R15A	O75807	674 aa	Predicted RBP	32.8	■■■□□ 2.84
TRAF4-204	ENST00000422344	RIMS2	Q9UQ26	1411 aa		32.79	■■■□□ 2.84
TRAF4-204	ENST00000422344	ZFYVE9	O95405	1425 aa		32.77	■■■□□ 2.84
TRAF4-204	ENST00000422344	ROBO1	Q9Y6N7	1651 aa		32.77	■■■□□ 2.84
TRAF4-204	ENST00000422344	NWD1	Q149M9	1564 aa		32.75	■■■□□ 2.83
TRAF4-204	ENST00000422344	NKTR	P30414	1462 aa	Known RBP	32.75	■■■□□ 2.83
TRAF4-204	ENST00000422344	ABCF1	Q8NE71	845 aa	Known RBP eCLIP	32.75	■■■□□ 2.83
TRAF4-204	ENST00000422344	SLC4A1AP	Q9BWU0	796 aa	Known RBP	32.75	■■■□□ 2.83
TRAF4-204	ENST00000422344	TRPM2	O94759	1503 aa		32.71	■■■□□ 2.83
TRAF4-204	ENST00000422344	MSH6	P52701	1360 aa		32.7	■■■□□ 2.83
TRAF4-204	ENST00000422344	PLEKHG1	Q9ULL1	1385 aa		32.7	■■■□□ 2.83
TRAF4-204	ENST00000422344	NUTM2D	Q5VT03	806 aa	Predicted RBP	32.66	■■■□□ 2.82
TRAF4-204	ENST00000422344	CLTCL1	P53675	1640 aa		32.66	■■■□□ 2.82
TRAF4-204	ENST00000422344	CHD2	O14647	1828 aa	Known RBP	32.65	■■■□□ 2.82
TRAF4-204	ENST00000422344	ZNF326	Q5BKZ1	582 aa	Known RBP	32.65	■■■□□ 2.82
TRAF4-204	ENST00000422344	SLAIN2	Q9P270	581 aa		32.65	■■■□□ 2.82
TRAF4-204	ENST00000422344	ACIN1	Q9UKV3	1341 aa	Known RBP	32.63	■■■□□ 2.81
TRAF4-204	ENST00000422344	POTEA	Q6S8J7	498 aa		32.63	■■■□□ 2.81
TRAF4-204	ENST00000422344	SETD5	Q9C0A6	1442 aa		32.62	■■■□□ 2.81
TRAF4-204	ENST00000422344	TBX22	Q9Y458	520 aa		32.59	■■■□□ 2.81
TRAF4-204	ENST00000422344	KIF1B	O60333	1816 aa		32.58	■■■□□ 2.81
TRAF4-204	ENST00000422344	PHLPP1	O60346	1717 aa		32.58	■■■□□ 2.81
TRAF4-204	ENST00000422344	MPHOSPH9	Q99550	1183 aa		32.56	■■■□□ 2.8
TRAF4-204	ENST00000422344	DIP2A	Q14689	1571 aa		32.54	■■■□□ 2.8
TRAF4-204	ENST00000422344	FOXD1	Q16676	465 aa		32.53	■■■□□ 2.8
TRAF4-204	ENST00000422344	C14orf37	Q86TY3	774 aa		32.53	■■■□□ 2.8
TRAF4-204	ENST00000422344	JCAD	Q9P266	1359 aa		32.52	■■■□□ 2.8
TRAF4-204	ENST00000422344	ADAMTS13	Q76LX8	1427 aa		32.51	■■■□□ 2.8
TRAF4-204	ENST00000422344	RAB3GAP2	Q9H2M9	1393 aa		32.5	■■■□□ 2.79
TRAF4-204	ENST00000422344	NCOA3	Q9Y6Q9	1424 aa		32.5	■■■□□ 2.79
TRAF4-204	ENST00000422344	NEXMIF	Q5QGS0	1516 aa		32.47	■■■□□ 2.79
TRAF4-204	ENST00000422344	CCDC144A	A2RUR9	1427 aa		32.46	■■■□□ 2.79
TRAF4-204	ENST00000422344	PIK3R4	Q99570	1358 aa		32.45	■■■□□ 2.79
TRAF4-204	ENST00000422344	COL16A1	Q07092	1604 aa	Predicted RBP	32.44	■■■□□ 2.78
TRAF4-204	ENST00000422344	SETBP1	Q9Y6X0	1596 aa		32.44	■■■□□ 2.78
TRAF4-204	ENST00000422344	SIPA1L2	Q9P2F8	1722 aa	Predicted RBP	32.43	■■■□□ 2.78
TRAF4-204	ENST00000422344	CADPS2	Q86UW7	1296 aa		32.43	■■■□□ 2.78
TRAF4-204	ENST00000422344	C19orf44	Q9H6X5	657 aa		32.43	■■■□□ 2.78
TRAF4-204	ENST00000422344	ATF3	P18847	181 aa		32.42	■■■□□ 2.78
TRAF4-204	ENST00000422344	RPGRIP1L	Q68CZ1	1315 aa		32.4	■■■□□ 2.78
TRAF4-204	ENST00000422344	NRXN3	Q9Y4C0	1643 aa		32.4	■■■□□ 2.78
TRAF4-204	ENST00000422344	VGF	O15240	615 aa	Predicted RBP	32.39	■■■□□ 2.78
TRAF4-204	ENST00000422344	AMOTL2	Q9Y2J4	779 aa		32.39	■■■□□ 2.78
TRAF4-204	ENST00000422344	PTPRU	Q92729	1446 aa		32.36	■■■□□ 2.77
TRAF4-204	ENST00000422344	SETD1A	O15047	1707 aa	Known RBP	32.35	■■■□□ 2.77
TRAF4-204	ENST00000422344	LRP6	O75581	1613 aa		32.34	■■■□□ 2.77
TRAF4-204	ENST00000422344	SPATA31A6	Q5VVP1	1343 aa		32.34	■■■□□ 2.77
TRAF4-204	ENST00000422344	MEX3C	Q5U5Q3	659 aa	Known RBP	32.34	■■■□□ 2.77
TRAF4-204	ENST00000422344	AHDC1	Q5TGY3	1603 aa	Predicted RBP	32.33	■■■□□ 2.77
TRAF4-204	ENST00000422344	PPL	O60437	1756 aa		32.31	■■■□□ 2.76
TRAF4-204	ENST00000422344	RGL3	Q3MIN7	710 aa		32.3	■■■□□ 2.76
TRAF4-204	ENST00000422344	HRC	P23327	699 aa		32.29	■■■□□ 2.76
TRAF4-204	ENST00000422344	BRINP3	Q76B58	766 aa		32.29	■■■□□ 2.76
TRAF4-204	ENST00000422344	MET	P08581	1390 aa		32.29	■■■□□ 2.76
TRAF4-204	ENST00000422344	SHPRH	Q149N8	1683 aa		32.27	■■■□□ 2.76
TRAF4-204	ENST00000422344	SPATA31E1	Q6ZUB1	1445 aa		32.27	■■■□□ 2.76
TRAF4-204	ENST00000422344	XRN1	Q8IZH2	1706 aa	Known RBP	32.26	■■■□□ 2.75
TRAF4-204	ENST00000422344	ZNF772	Q68DY9	489 aa	Predicted RBP	32.25	■■■□□ 2.75
TRAF4-204	ENST00000422344	ANKRD30B	Q9BXX2	1392 aa		32.22	■■■□□ 2.75
TRAF4-204	ENST00000422344	DCC	P43146	1447 aa		32.22	■■■□□ 2.75
TRAF4-204	ENST00000422344	NUTM2B	A6NNL0	878 aa	Predicted RBP	32.2	■■■□□ 2.75
TRAF4-204	ENST00000422344	NUTM2E	B1AL46	878 aa	Predicted RBP	32.2	■■■□□ 2.75
TRAF4-204	ENST00000422344	NUTM2A	Q8IVF1	878 aa	Predicted RBP	32.2	■■■□□ 2.75
TRAF4-204	ENST00000422344	ASXL1	Q8IXJ9	1541 aa		32.18	■■■□□ 2.74
TRAF4-204	ENST00000422344	IFT172	Q9UG01	1749 aa		32.17	■■■□□ 2.74
TRAF4-204	ENST00000422344	ADGRF5	Q8IZF2	1346 aa		32.17	■■■□□ 2.74
TRAF4-204	ENST00000422344	MST1R	Q04912	1400 aa		32.17	■■■□□ 2.74
TRAF4-204	ENST00000422344	RXRB	P28702	533 aa		32.1	■■■□□ 2.73
TRAF4-204	ENST00000422344	NHSL1	Q5SYE7	1610 aa		32.1	■■■□□ 2.73
TRAF4-204	ENST00000422344	PTCH1	Q13635	1447 aa		32.09	■■■□□ 2.73
TRAF4-204	ENST00000422344	ADGRL3	Q9HAR2	1447 aa		32.09	■■■□□ 2.73
TRAF4-204	ENST00000422344	DDX17	Q92841	729 aa	Known RBP	32.08	■■■□□ 2.73
TRAF4-204	ENST00000422344	UPF1	Q92900	1129 aa	Known RBP eCLIP	32.08	■■■□□ 2.73
TRAF4-204	ENST00000422344	LRRC59	Q96AG4	307 aa	Known RBP	32.08	■■■□□ 2.73
TRAF4-204	ENST00000422344	AFF2	P51816	1311 aa		32.06	■■■□□ 2.72
TRAF4-204	ENST00000422344	PIK3C2G	O75747	1445 aa		32.06	■■■□□ 2.72
TRAF4-204	ENST00000422344	NALCN	Q8IZF0	1738 aa		32.05	■■■□□ 2.72
TRAF4-204	ENST00000422344	ROBO2	Q9HCK4	1378 aa		32.04	■■■□□ 2.72
TRAF4-204	ENST00000422344	MYOM2	P54296	1465 aa		32.03	■■■□□ 2.72
TRAF4-204	ENST00000422344	PRAG1	Q86YV5	1406 aa		32.03	■■■□□ 2.72
TRAF4-204	ENST00000422344	PNPLA6	Q8IY17	1366 aa		31.99	■■■□□ 2.71
TRAF4-204	ENST00000422344	C8orf37	Q96NL8	207 aa		31.99	■■■□□ 2.71

Retrieved 100 of 20,778 RNA–protein pairs in 44.4 ms