RNA–Protein interactions for RNA: ENST00000422245.5

SQSTM1-203, Transcript of sequestosome 1, humanhuman

TSL 4

Gene SQSTM1, Length 628 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SQSTM1-203ENST00000422245 NUP155O75694 1391 aa17.65■□□□□ 0.42
SQSTM1-203ENST00000422245 PLEKHG1Q9ULL1 1385 aa17.65■□□□□ 0.42
SQSTM1-203ENST00000422245 NKTRP30414 1462 aaKnown RBP17.64■□□□□ 0.41
SQSTM1-203ENST00000422245 MED1Q15648 1581 aaPredicted RBP17.64■□□□□ 0.41
SQSTM1-203ENST00000422245 RIMS2Q9UQ26 1411 aa17.64■□□□□ 0.41
SQSTM1-203ENST00000422245 HDGFP51858 240 aaKnown RBP17.63■□□□□ 0.41
SQSTM1-203ENST00000422245 PPARGC1BQ86YN6 1023 aaKnown RBP17.63■□□□□ 0.41
SQSTM1-203ENST00000422245 SLC26A8Q96RN1 970 aa17.63■□□□□ 0.41
SQSTM1-203ENST00000422245 TMEM94Q12767 1356 aa17.63■□□□□ 0.41
SQSTM1-203ENST00000422245 RRBP1Q9P2E9 1410 aaKnown RBP17.63■□□□□ 0.41
SQSTM1-203ENST00000422245 PPP1R15AO75807 674 aaPredicted RBP17.62■□□□□ 0.41
SQSTM1-203ENST00000422245 SOCS7O14512 581 aa17.6■□□□□ 0.41
SQSTM1-203ENST00000422245 ABCF1Q8NE71 845 aaKnown RBP eCLIP17.6■□□□□ 0.41
SQSTM1-203ENST00000422245 BCANQ96GW7 911 aa17.6■□□□□ 0.41
SQSTM1-203ENST00000422245 CHGAP10645 457 aaKnown RBP17.58■□□□□ 0.4
SQSTM1-203ENST00000422245 DIP2AQ14689 1571 aa17.57■□□□□ 0.4
SQSTM1-203ENST00000422245 CHD2O14647 1828 aaKnown RBP17.57■□□□□ 0.4
SQSTM1-203ENST00000422245 PROSER2Q86WR7 435 aaPredicted RBP17.57■□□□□ 0.4
SQSTM1-203ENST00000422245 SPHKAPQ2M3C7 1700 aa17.57■□□□□ 0.4
SQSTM1-203ENST00000422245 FAM135BQ49AJ0 1406 aa17.56■□□□□ 0.4
SQSTM1-203ENST00000422245 TBX22Q9Y458 520 aa17.54■□□□□ 0.4
SQSTM1-203ENST00000422245 MSH6P52701 1360 aa17.53■□□□□ 0.4
SQSTM1-203ENST00000422245 NAIPQ13075 1403 aa17.53■□□□□ 0.4
SQSTM1-203ENST00000422245 ADAMTS13Q76LX8 1427 aa17.53■□□□□ 0.4
SQSTM1-203ENST00000422245 PIK3R4Q99570 1358 aa17.53■□□□□ 0.4
SQSTM1-203ENST00000422245 SENP3Q9H4L4 574 aaPredicted RBP17.52■□□□□ 0.4
SQSTM1-203ENST00000422245 ROBO1Q9Y6N7 1651 aa17.52■□□□□ 0.39
SQSTM1-203ENST00000422245 NCOA3Q9Y6Q9 1424 aa17.51■□□□□ 0.39
SQSTM1-203ENST00000422245 HFM1A2PYH4 1435 aa17.5■□□□□ 0.39
SQSTM1-203ENST00000422245 TRPM2O94759 1503 aa17.5■□□□□ 0.39
SQSTM1-203ENST00000422245 RBM33Q96EV2 1170 aaKnown RBP17.49■□□□□ 0.39
SQSTM1-203ENST00000422245 PHF23Q9BUL5 403 aaPredicted RBP17.49■□□□□ 0.39
SQSTM1-203ENST00000422245 NUTM2DQ5VT03 806 aaPredicted RBP17.48■□□□□ 0.39
SQSTM1-203ENST00000422245 SETBP1Q9Y6X0 1596 aa17.47■□□□□ 0.39
SQSTM1-203ENST00000422245 CLTCL1P53675 1640 aa17.46■□□□□ 0.39
SQSTM1-203ENST00000422245 NRXN3Q9Y4C0 1643 aa17.45■□□□□ 0.38
SQSTM1-203ENST00000422245 ZNF326Q5BKZ1 582 aaKnown RBP17.44■□□□□ 0.38
SQSTM1-203ENST00000422245 KIF1BO60333 1816 aa17.44■□□□□ 0.38
SQSTM1-203ENST00000422245 C14orf37Q86TY3 774 aa17.43■□□□□ 0.38
SQSTM1-203ENST00000422245 SLAIN2Q9P270 581 aa17.43■□□□□ 0.38
SQSTM1-203ENST00000422245 XRN1Q8IZH2 1706 aaKnown RBP17.42■□□□□ 0.38
SQSTM1-203ENST00000422245 NEXMIFQ5QGS0 1516 aa17.42■□□□□ 0.38
SQSTM1-203ENST00000422245 PHLPP1O60346 1717 aa17.41■□□□□ 0.38
SQSTM1-203ENST00000422245 SIPA1L2Q9P2F8 1722 aaPredicted RBP17.41■□□□□ 0.38
SQSTM1-203ENST00000422245 PTPRUQ92729 1446 aa17.41■□□□□ 0.38
SQSTM1-203ENST00000422245 CADPS2Q86UW7 1296 aa17.4■□□□□ 0.38
SQSTM1-203ENST00000422245 TRIM52Q96A61 297 aa17.4■□□□□ 0.38
SQSTM1-203ENST00000422245 AMOTL2Q9Y2J4 779 aa17.4■□□□□ 0.38
SQSTM1-203ENST00000422245 C19orf44Q9H6X5 657 aa17.39■□□□□ 0.37
SQSTM1-203ENST00000422245 DCCP43146 1447 aa17.38■□□□□ 0.37
SQSTM1-203ENST00000422245 ATF3P18847 181 aa17.37■□□□□ 0.37
SQSTM1-203ENST00000422245 SLC4A1APQ9BWU0 796 aaKnown RBP17.37■□□□□ 0.37
SQSTM1-203ENST00000422245 COL16A1Q07092 1604 aaPredicted RBP17.36■□□□□ 0.37
SQSTM1-203ENST00000422245 METP08581 1390 aa17.36■□□□□ 0.37
SQSTM1-203ENST00000422245 JCADQ9P266 1359 aa17.36■□□□□ 0.37
SQSTM1-203ENST00000422245 AHDC1Q5TGY3 1603 aaPredicted RBP17.35■□□□□ 0.37
SQSTM1-203ENST00000422245 RPGRIP1LQ68CZ1 1315 aa17.33■□□□□ 0.36
SQSTM1-203ENST00000422245 VGFO15240 615 aaPredicted RBP17.32■□□□□ 0.36
SQSTM1-203ENST00000422245 ADGRL3Q9HAR2 1447 aa17.31■□□□□ 0.36
SQSTM1-203ENST00000422245 SETD1AO15047 1707 aaKnown RBP17.31■□□□□ 0.36
SQSTM1-203ENST00000422245 RGS17Q9UGC6 210 aaPredicted RBP17.31■□□□□ 0.36
SQSTM1-203ENST00000422245 PTCH1Q13635 1447 aa17.3■□□□□ 0.36
SQSTM1-203ENST00000422245 PPLO60437 1756 aa17.3■□□□□ 0.36
SQSTM1-203ENST00000422245 PRAG1Q86YV5 1406 aa17.3■□□□□ 0.36
SQSTM1-203ENST00000422245 SHPRHQ149N8 1683 aa17.29■□□□□ 0.36
SQSTM1-203ENST00000422245 CCDC144AA2RUR9 1427 aa17.29■□□□□ 0.36
SQSTM1-203ENST00000422245 MST1RQ04912 1400 aa17.29■□□□□ 0.36
SQSTM1-203ENST00000422245 NALCNQ8IZF0 1738 aa17.28■□□□□ 0.36
SQSTM1-203ENST00000422245 BRINP3Q76B58 766 aa17.28■□□□□ 0.36
SQSTM1-203ENST00000422245 ASXL1Q8IXJ9 1541 aa17.27■□□□□ 0.36
SQSTM1-203ENST00000422245 SPATA31A6Q5VVP1 1343 aa17.27■□□□□ 0.36
SQSTM1-203ENST00000422245 ACIN1Q9UKV3 1341 aaKnown RBP17.26■□□□□ 0.35
SQSTM1-203ENST00000422245 NHSL1Q5SYE7 1610 aa17.25■□□□□ 0.35
SQSTM1-203ENST00000422245 FOXD1Q16676 465 aa17.24■□□□□ 0.35
SQSTM1-203ENST00000422245 MPHOSPH9Q99550 1183 aa17.23■□□□□ 0.35
SQSTM1-203ENST00000422245 ROBO2Q9HCK4 1378 aa17.23■□□□□ 0.35
SQSTM1-203ENST00000422245 SPATA31E1Q6ZUB1 1445 aa17.22■□□□□ 0.35
SQSTM1-203ENST00000422245 LRP6O75581 1613 aa17.22■□□□□ 0.35
SQSTM1-203ENST00000422245 POTEAQ6S8J7 498 aa17.22■□□□□ 0.35
SQSTM1-203ENST00000422245 ANKRD30BQ9BXX2 1392 aa17.22■□□□□ 0.35
SQSTM1-203ENST00000422245 SETD5Q9C0A6 1442 aa17.21■□□□□ 0.35
SQSTM1-203ENST00000422245 IFT172Q9UG01 1749 aa17.21■□□□□ 0.35
SQSTM1-203ENST00000422245 C1orf167Q5SNV9 1468 aa17.19■□□□□ 0.34
SQSTM1-203ENST00000422245 MEX3CQ5U5Q3 659 aaKnown RBP17.19■□□□□ 0.34
SQSTM1-203ENST00000422245 LAMC1P11047 1609 aa17.18■□□□□ 0.34
SQSTM1-203ENST00000422245 ADGRF5Q8IZF2 1346 aa17.17■□□□□ 0.34
SQSTM1-203ENST00000422245 TECPR2O15040 1411 aa17.16■□□□□ 0.34
SQSTM1-203ENST00000422245 LRRC59Q96AG4 307 aaKnown RBP17.16■□□□□ 0.34
SQSTM1-203ENST00000422245 CDC42BPGQ6DT37 1551 aa17.15■□□□□ 0.34
SQSTM1-203ENST00000422245 PIK3C2GO75747 1445 aa17.15■□□□□ 0.34
SQSTM1-203ENST00000422245 RGL3Q3MIN7 710 aa17.15■□□□□ 0.34
SQSTM1-203ENST00000422245 ZNF772Q68DY9 489 aaPredicted RBP17.15■□□□□ 0.34
SQSTM1-203ENST00000422245 KNDC1Q76NI1 1749 aa17.14■□□□□ 0.33
SQSTM1-203ENST00000422245 LRPPRCP42704 1394 aaKnown RBP17.14■□□□□ 0.33
SQSTM1-203ENST00000422245 PNPLA6Q8IY17 1366 aa17.14■□□□□ 0.33
SQSTM1-203ENST00000422245 RAB3GAP2Q9H2M9 1393 aa17.12■□□□□ 0.33
SQSTM1-203ENST00000422245 NUTM2BA6NNL0 878 aaPredicted RBP17.11■□□□□ 0.33
SQSTM1-203ENST00000422245 NUTM2EB1AL46 878 aaPredicted RBP17.11■□□□□ 0.33
SQSTM1-203ENST00000422245 NUTM2AQ8IVF1 878 aaPredicted RBP17.11■□□□□ 0.33
SQSTM1-203ENST00000422245 DDX17Q92841 729 aaKnown RBP17.11■□□□□ 0.33
Retrieved 100 of 20,778 RNA–protein pairs in 11.7 ms