RNA–Protein interactions for RNA: ENST00000421999.7

CMSS1-201, Transcript of cms1 ribosomal small subunit homolog (yeast), humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CMSS1, Length 4,330 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CMSS1-201ENST00000421999 ATP7AQ04656 1500 aa12.69□□□□□ -0.38
CMSS1-201ENST00000421999 ANKLE2Q86XL3 938 aa12.69□□□□□ -0.38
CMSS1-201ENST00000421999 SUPT16HQ9Y5B9 1047 aaKnown RBP12.68□□□□□ -0.38
CMSS1-201ENST00000421999 NEO1Q92859 1461 aa12.68□□□□□ -0.38
CMSS1-201ENST00000421999 MYO5CQ9NQX4 1742 aa12.68□□□□□ -0.38
CMSS1-201ENST00000421999 CGNL1Q0VF96 1302 aa12.67□□□□□ -0.38
CMSS1-201ENST00000421999 SLC12A5Q9H2X9 1139 aa12.67□□□□□ -0.38
CMSS1-201ENST00000421999 PZPP20742 1482 aa12.67□□□□□ -0.38
CMSS1-201ENST00000421999 SAMD9LQ8IVG5 1584 aa12.67□□□□□ -0.38
CMSS1-201ENST00000421999 FRAT1Q92837 279 aaPredicted RBP12.67□□□□□ -0.38
CMSS1-201ENST00000421999 FTSJ3Q8IY81 847 aaKnown RBP12.66□□□□□ -0.38
CMSS1-201ENST00000421999 C11orf95C9JLR9 678 aaPredicted RBP12.66□□□□□ -0.38
CMSS1-201ENST00000421999 ZNF330Q9Y3S2 320 aaPredicted RBP12.66□□□□□ -0.38
CMSS1-201ENST00000421999 NOS1P29475 1434 aa12.66□□□□□ -0.38
CMSS1-201ENST00000421999 ATF3P18847 181 aa12.66□□□□□ -0.38
CMSS1-201ENST00000421999 MYBBP1AQ9BQG0 1328 aaKnown RBP12.66□□□□□ -0.38
CMSS1-201ENST00000421999 YEATS2Q9ULM3 1422 aa12.66□□□□□ -0.38
CMSS1-201ENST00000421999 WAPLQ7Z5K2 1190 aa12.64□□□□□ -0.39
CMSS1-201ENST00000421999 PSME1Q06323 249 aa12.64□□□□□ -0.39
CMSS1-201ENST00000421999 CCDC146Q8IYE0 955 aa12.64□□□□□ -0.39
CMSS1-201ENST00000421999 GGNBP2Q9H3C7 697 aa12.64□□□□□ -0.39
CMSS1-201ENST00000421999 RTL5Q5HYW3 569 aaPredicted RBP12.64□□□□□ -0.39
CMSS1-201ENST00000421999 ARHGEF12Q9NZN5 1544 aa12.63□□□□□ -0.39
CMSS1-201ENST00000421999 ADCY10Q96PN6 1610 aa12.63□□□□□ -0.39
CMSS1-201ENST00000421999 ATP10AO60312 1499 aa12.63□□□□□ -0.39
CMSS1-201ENST00000421999 PROSER2Q86WR7 435 aaPredicted RBP12.63□□□□□ -0.39
CMSS1-201ENST00000421999 COG3Q96JB2 828 aa12.63□□□□□ -0.39
CMSS1-201ENST00000421999 CNTLNQ9NXG0 1405 aa12.63□□□□□ -0.39
CMSS1-201ENST00000421999 TNRQ92752 1358 aa12.63□□□□□ -0.39
CMSS1-201ENST00000421999 CDK19Q9BWU1 502 aa12.63□□□□□ -0.39
CMSS1-201ENST00000421999 UPF2Q9HAU5 1272 aaKnown RBP12.63□□□□□ -0.39
CMSS1-201ENST00000421999 ARHGEF5Q12774 1597 aa12.62□□□□□ -0.39
CMSS1-201ENST00000421999 DNAJC5Q9H3Z4 198 aa12.62□□□□□ -0.39
CMSS1-201ENST00000421999 HSP90AA1P07900 732 aaKnown RBP12.61□□□□□ -0.39
CMSS1-201ENST00000421999 PMFBP1Q8TBY8 1022 aa12.61□□□□□ -0.39
CMSS1-201ENST00000421999 ZMYM3Q14202 1370 aa12.61□□□□□ -0.39
CMSS1-201ENST00000421999 PREX2Q70Z35 1606 aa12.61□□□□□ -0.39
CMSS1-201ENST00000421999 TSPOAP1O95153 1857 aa12.61□□□□□ -0.39
CMSS1-201ENST00000421999 CABP1Q9NZU7 370 aa12.61□□□□□ -0.39
CMSS1-201ENST00000421999 EVA1CP58658 441 aa12.61□□□□□ -0.39
CMSS1-201ENST00000421999 C14orf93Q9H972 538 aaKnown RBP12.6□□□□□ -0.39
CMSS1-201ENST00000421999 ABCC1P33527 1531 aa12.6□□□□□ -0.39
CMSS1-201ENST00000421999 RBM33Q96EV2 1170 aaKnown RBP12.6□□□□□ -0.39
CMSS1-201ENST00000421999 SHROOM2Q13796 1616 aa12.6□□□□□ -0.39
CMSS1-201ENST00000421999 NUTM2GQ5VZR2 741 aa12.59□□□□□ -0.39
CMSS1-201ENST00000421999 KDM6BO15054 1643 aa12.59□□□□□ -0.39
CMSS1-201ENST00000421999 CDC42BPAQ5VT25 1732 aa12.58□□□□□ -0.4
CMSS1-201ENST00000421999 ESCO1Q5FWF5 840 aa12.57□□□□□ -0.4
CMSS1-201ENST00000421999 AMOTL2Q9Y2J4 779 aa12.57□□□□□ -0.4
CMSS1-201ENST00000421999 RRP7AQ9Y3A4 280 aaKnown RBP12.57□□□□□ -0.4
CMSS1-201ENST00000421999 ANP32AP39687 249 aaKnown RBP12.56□□□□□ -0.4
CMSS1-201ENST00000421999 MEX3CQ5U5Q3 659 aaKnown RBP12.56□□□□□ -0.4
CMSS1-201ENST00000421999 CFAP65Q6ZU64 1925 aaKnown RBP12.56□□□□□ -0.4
CMSS1-201ENST00000421999 LRRIQ1Q96JM4 1722 aa12.55□□□□□ -0.4
CMSS1-201ENST00000421999 RIMBP3CA6NJZ7 1639 aa12.55□□□□□ -0.4
CMSS1-201ENST00000421999 RIMBP3BA6NNM3 1639 aa12.55□□□□□ -0.4
CMSS1-201ENST00000421999 RIMBP3Q9UFD9 1639 aa12.55□□□□□ -0.4
CMSS1-201ENST00000421999 ZFYVE16Q7Z3T8 1539 aa12.55□□□□□ -0.4
CMSS1-201ENST00000421999 NLRP6P59044 892 aa12.54□□□□□ -0.4
CMSS1-201ENST00000421999 MLH3Q9UHC1 1453 aa12.54□□□□□ -0.4
CMSS1-201ENST00000421999 PRAG1Q86YV5 1406 aa12.54□□□□□ -0.4
CMSS1-201ENST00000421999 OS9Q13438 667 aaPredicted RBP12.54□□□□□ -0.4
CMSS1-201ENST00000421999 MTHFSP49914 203 aa12.53□□□□□ -0.4
CMSS1-201ENST00000421999 ADGBQ8N7X0 1667 aa12.53□□□□□ -0.4
CMSS1-201ENST00000421999 NUDT16Q96DE0 195 aaKnown RBP12.53□□□□□ -0.4
CMSS1-201ENST00000421999 GCC2Q8IWJ2 1684 aa12.53□□□□□ -0.4
CMSS1-201ENST00000421999 CFAP74Q9C0B2 1584 aa12.52□□□□□ -0.4
CMSS1-201ENST00000421999 CCDC61Q9Y6R9 512 aa12.52□□□□□ -0.4
CMSS1-201ENST00000421999 MAST1Q9Y2H9 1570 aa12.52□□□□□ -0.4
CMSS1-201ENST00000421999 NPATQ14207 1427 aa12.52□□□□□ -0.41
CMSS1-201ENST00000421999 SCAF11Q99590 1463 aaKnown RBP12.52□□□□□ -0.41
CMSS1-201ENST00000421999 APAF1O14727 1248 aa12.52□□□□□ -0.41
CMSS1-201ENST00000421999 CCDC184Q52MB2 194 aa12.51□□□□□ -0.41
CMSS1-201ENST00000421999 ABTB2Q8N961 1025 aa12.51□□□□□ -0.41
CMSS1-201ENST00000421999 RIMS2Q9UQ26 1411 aa12.51□□□□□ -0.41
CMSS1-201ENST00000421999 DIAPH1O60610 1272 aaKnown RBP12.51□□□□□ -0.41
CMSS1-201ENST00000421999 PPP2R1AP30153 589 aa12.51□□□□□ -0.41
CMSS1-201ENST00000421999 CALD1Q05682 793 aaKnown RBP12.5□□□□□ -0.41
CMSS1-201ENST00000421999 HSPA2P54652 639 aa12.5□□□□□ -0.41
CMSS1-201ENST00000421999 GOLGA2Q08379 1002 aa12.5□□□□□ -0.41
CMSS1-201ENST00000421999 DISP3Q9P2K9 1392 aa12.5□□□□□ -0.41
CMSS1-201ENST00000421999 ATAD2Q6PL18 1390 aa12.49□□□□□ -0.41
CMSS1-201ENST00000421999 PIP4K2BP78356 416 aa12.49□□□□□ -0.41
CMSS1-201ENST00000421999 CDC42BPBQ9Y5S2 1711 aa12.49□□□□□ -0.41
CMSS1-201ENST00000421999 XPCQ01831 940 aaPredicted RBP12.48□□□□□ -0.41
CMSS1-201ENST00000421999 USP35Q9P2H5 1018 aa12.48□□□□□ -0.41
CMSS1-201ENST00000421999 ARAP3Q8WWN8 1544 aa12.48□□□□□ -0.41
CMSS1-201ENST00000421999 SYTL4Q96C24 671 aaPredicted RBP12.48□□□□□ -0.41
CMSS1-201ENST00000421999 ADAMTS8Q9UP79 889 aa12.48□□□□□ -0.41
CMSS1-201ENST00000421999 RALGAPBQ86X10 1494 aa12.48□□□□□ -0.41
CMSS1-201ENST00000421999 MS4A1P11836 297 aa12.48□□□□□ -0.41
CMSS1-201ENST00000421999 ZNF692Q9BU19 519 aaPredicted RBP12.48□□□□□ -0.41
CMSS1-201ENST00000421999 WASLO00401 505 aaPredicted RBP12.48□□□□□ -0.41
CMSS1-201ENST00000421999 HMOX1P09601 288 aa12.48□□□□□ -0.41
CMSS1-201ENST00000421999 STK31Q9BXU1 1019 aa12.47□□□□□ -0.41
CMSS1-201ENST00000421999 GPRASP1Q5JY77 1395 aa12.47□□□□□ -0.41
CMSS1-201ENST00000421999 ABCA9Q8IUA7 1624 aa12.47□□□□□ -0.41
CMSS1-201ENST00000421999 RCAN3Q9UKA8 241 aa12.47□□□□□ -0.41
CMSS1-201ENST00000421999 CHMP4BQ9H444 224 aaKnown RBP12.46□□□□□ -0.41
CMSS1-201ENST00000421999 MAGI2Q86UL8 1455 aa12.46□□□□□ -0.41
Retrieved 100 of 20,778 RNA–protein pairs in 198 ms