RNA–Protein interactions for RNA: ENST00000420482.5

PTPN4-202, Transcript of protein tyrosine phosphatase, non-receptor type 4, humanhuman

TSL 4

Gene PTPN4, Length 568 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPN4-202ENST00000420482 E9PCH4 1651 aa32.39■■■□□ 2.78
PTPN4-202ENST00000420482 RRBP1Q9P2E9 1410 aaKnown RBP32.38■■■□□ 2.77
PTPN4-202ENST00000420482 PPP1R15AO75807 674 aaPredicted RBP32.36■■■□□ 2.77
PTPN4-202ENST00000420482 MYO5BQ9ULV0 1848 aa32.35■■■□□ 2.77
PTPN4-202ENST00000420482 CHGAP10645 457 aaKnown RBP32.34■■■□□ 2.77
PTPN4-202ENST00000420482 SLC26A8Q96RN1 970 aa32.33■■■□□ 2.77
PTPN4-202ENST00000420482 TMEM131LA2VDJ0 1609 aa32.33■■■□□ 2.77
PTPN4-202ENST00000420482 ABCF1Q8NE71 845 aaKnown RBP eCLIP32.32■■■□□ 2.76
PTPN4-202ENST00000420482 NWD1Q149M9 1564 aa32.32■■■□□ 2.76
PTPN4-202ENST00000420482 KCNA6P17658 529 aa32.31■■■□□ 2.76
PTPN4-202ENST00000420482 RIMS2Q9UQ26 1411 aa32.31■■■□□ 2.76
PTPN4-202ENST00000420482 ZFYVE9O95405 1425 aa32.29■■■□□ 2.76
PTPN4-202ENST00000420482 PLEKHG1Q9ULL1 1385 aa32.29■■■□□ 2.76
PTPN4-202ENST00000420482 NKTRP30414 1462 aaKnown RBP32.25■■■□□ 2.75
PTPN4-202ENST00000420482 PHF23Q9BUL5 403 aaPredicted RBP32.25■■■□□ 2.75
PTPN4-202ENST00000420482 TMEM94Q12767 1356 aa32.24■■■□□ 2.75
PTPN4-202ENST00000420482 SENP3Q9H4L4 574 aaPredicted RBP32.24■■■□□ 2.75
PTPN4-202ENST00000420482 PROSER2Q86WR7 435 aaPredicted RBP32.23■■■□□ 2.75
PTPN4-202ENST00000420482 FAM135BQ49AJ0 1406 aa32.22■■■□□ 2.75
PTPN4-202ENST00000420482 CHD2O14647 1828 aaKnown RBP32.21■■■□□ 2.75
PTPN4-202ENST00000420482 ROBO1Q9Y6N7 1651 aa32.21■■■□□ 2.75
PTPN4-202ENST00000420482 NAIPQ13075 1403 aa32.18■■■□□ 2.74
PTPN4-202ENST00000420482 SPHKAPQ2M3C7 1700 aa32.17■■■□□ 2.74
PTPN4-202ENST00000420482 TBX22Q9Y458 520 aa32.17■■■□□ 2.74
PTPN4-202ENST00000420482 DIP2AQ14689 1571 aa32.13■■■□□ 2.73
PTPN4-202ENST00000420482 HFM1A2PYH4 1435 aa32.12■■■□□ 2.73
PTPN4-202ENST00000420482 NUTM2DQ5VT03 806 aaPredicted RBP32.11■■■□□ 2.73
PTPN4-202ENST00000420482 MSH6P52701 1360 aa32.1■■■□□ 2.73
PTPN4-202ENST00000420482 ZNF326Q5BKZ1 582 aaKnown RBP32.09■■■□□ 2.73
PTPN4-202ENST00000420482 TRIM52Q96A61 297 aa32.09■■■□□ 2.73
PTPN4-202ENST00000420482 PIK3R4Q99570 1358 aa32.08■■■□□ 2.73
PTPN4-202ENST00000420482 RBM33Q96EV2 1170 aaKnown RBP32.05■■■□□ 2.72
PTPN4-202ENST00000420482 ADAMTS13Q76LX8 1427 aa32.05■■■□□ 2.72
PTPN4-202ENST00000420482 TRPM2O94759 1503 aa32.04■■■□□ 2.72
PTPN4-202ENST00000420482 NCOA3Q9Y6Q9 1424 aa32.03■■■□□ 2.72
PTPN4-202ENST00000420482 PHLPP1O60346 1717 aa32.03■■■□□ 2.72
PTPN4-202ENST00000420482 C14orf37Q86TY3 774 aa32■■■□□ 2.71
PTPN4-202ENST00000420482 RGS17Q9UGC6 210 aaPredicted RBP32■■■□□ 2.71
PTPN4-202ENST00000420482 SLC4A1APQ9BWU0 796 aaKnown RBP31.99■■■□□ 2.71
PTPN4-202ENST00000420482 CLTCL1P53675 1640 aa31.97■■■□□ 2.71
PTPN4-202ENST00000420482 KIF1BO60333 1816 aa31.96■■■□□ 2.71
PTPN4-202ENST00000420482 SLAIN2Q9P270 581 aa31.95■■■□□ 2.71
PTPN4-202ENST00000420482 SETBP1Q9Y6X0 1596 aa31.94■■■□□ 2.7
PTPN4-202ENST00000420482 SIPA1L2Q9P2F8 1722 aaPredicted RBP31.93■■■□□ 2.7
PTPN4-202ENST00000420482 AMOTL2Q9Y2J4 779 aa31.93■■■□□ 2.7
PTPN4-202ENST00000420482 COL16A1Q07092 1604 aaPredicted RBP31.92■■■□□ 2.7
PTPN4-202ENST00000420482 ATF3P18847 181 aa31.89■■■□□ 2.7
PTPN4-202ENST00000420482 CADPS2Q86UW7 1296 aa31.89■■■□□ 2.7
PTPN4-202ENST00000420482 C19orf44Q9H6X5 657 aa31.89■■■□□ 2.7
PTPN4-202ENST00000420482 ACIN1Q9UKV3 1341 aaKnown RBP31.88■■■□□ 2.69
PTPN4-202ENST00000420482 NEXMIFQ5QGS0 1516 aa31.88■■■□□ 2.69
PTPN4-202ENST00000420482 NRXN3Q9Y4C0 1643 aa31.87■■■□□ 2.69
PTPN4-202ENST00000420482 VGFO15240 615 aaPredicted RBP31.86■■■□□ 2.69
PTPN4-202ENST00000420482 JCADQ9P266 1359 aa31.84■■■□□ 2.69
PTPN4-202ENST00000420482 RPGRIP1LQ68CZ1 1315 aa31.84■■■□□ 2.69
PTPN4-202ENST00000420482 PTPRUQ92729 1446 aa31.83■■■□□ 2.69
PTPN4-202ENST00000420482 XRN1Q8IZH2 1706 aaKnown RBP31.83■■■□□ 2.69
PTPN4-202ENST00000420482 AHDC1Q5TGY3 1603 aaPredicted RBP31.83■■■□□ 2.69
PTPN4-202ENST00000420482 POTEAQ6S8J7 498 aa31.8■■■□□ 2.68
PTPN4-202ENST00000420482 SHPRHQ149N8 1683 aa31.79■■■□□ 2.68
PTPN4-202ENST00000420482 METP08581 1390 aa31.78■■■□□ 2.68
PTPN4-202ENST00000420482 DCCP43146 1447 aa31.77■■■□□ 2.68
PTPN4-202ENST00000420482 CCDC144AA2RUR9 1427 aa31.75■■■□□ 2.67
PTPN4-202ENST00000420482 MPHOSPH9Q99550 1183 aa31.74■■■□□ 2.67
PTPN4-202ENST00000420482 SETD1AO15047 1707 aaKnown RBP31.72■■■□□ 2.67
PTPN4-202ENST00000420482 FOXD1Q16676 465 aa31.71■■■□□ 2.67
PTPN4-202ENST00000420482 LRP6O75581 1613 aa31.71■■■□□ 2.67
PTPN4-202ENST00000420482 SPATA31A6Q5VVP1 1343 aa31.68■■■□□ 2.66
PTPN4-202ENST00000420482 PPLO60437 1756 aa31.68■■■□□ 2.66
PTPN4-202ENST00000420482 SETD5Q9C0A6 1442 aa31.67■■■□□ 2.66
PTPN4-202ENST00000420482 NHSL1Q5SYE7 1610 aa31.66■■■□□ 2.66
PTPN4-202ENST00000420482 ADGRL3Q9HAR2 1447 aa31.66■■■□□ 2.66
PTPN4-202ENST00000420482 NALCNQ8IZF0 1738 aa31.63■■■□□ 2.65
PTPN4-202ENST00000420482 PTCH1Q13635 1447 aa31.63■■■□□ 2.65
PTPN4-202ENST00000420482 ASXL1Q8IXJ9 1541 aa31.63■■■□□ 2.65
PTPN4-202ENST00000420482 BRINP3Q76B58 766 aa31.62■■■□□ 2.65
PTPN4-202ENST00000420482 MST1RQ04912 1400 aa31.6■■■□□ 2.65
PTPN4-202ENST00000420482 ANKRD30BQ9BXX2 1392 aa31.6■■■□□ 2.65
PTPN4-202ENST00000420482 RGL3Q3MIN7 710 aa31.6■■■□□ 2.65
PTPN4-202ENST00000420482 SPATA31E1Q6ZUB1 1445 aa31.57■■■□□ 2.64
PTPN4-202ENST00000420482 PRAG1Q86YV5 1406 aa31.56■■■□□ 2.64
PTPN4-202ENST00000420482 MEX3CQ5U5Q3 659 aaKnown RBP31.53■■■□□ 2.64
PTPN4-202ENST00000420482 ROBO2Q9HCK4 1378 aa31.53■■■□□ 2.64
PTPN4-202ENST00000420482 RAB3GAP2Q9H2M9 1393 aa31.52■■■□□ 2.64
PTPN4-202ENST00000420482 ADGRF5Q8IZF2 1346 aa31.51■■■□□ 2.64
PTPN4-202ENST00000420482 ZNF772Q68DY9 489 aaPredicted RBP31.5■■■□□ 2.63
PTPN4-202ENST00000420482 IFT172Q9UG01 1749 aa31.49■■■□□ 2.63
PTPN4-202ENST00000420482 LAMC1P11047 1609 aa31.47■■■□□ 2.63
PTPN4-202ENST00000420482 LRRC59Q96AG4 307 aaKnown RBP31.47■■■□□ 2.63
PTPN4-202ENST00000420482 C1orf167Q5SNV9 1468 aa31.45■■■□□ 2.62
PTPN4-202ENST00000420482 PIK3C2GO75747 1445 aa31.42■■■□□ 2.62
PTPN4-202ENST00000420482 STK26Q9P289 416 aa31.4■■■□□ 2.62
PTPN4-202ENST00000420482 LRPPRCP42704 1394 aaKnown RBP31.4■■■□□ 2.62
PTPN4-202ENST00000420482 NUTM2BA6NNL0 878 aaPredicted RBP31.39■■■□□ 2.62
PTPN4-202ENST00000420482 NUTM2EB1AL46 878 aaPredicted RBP31.39■■■□□ 2.62
PTPN4-202ENST00000420482 NUTM2AQ8IVF1 878 aaPredicted RBP31.39■■■□□ 2.62
PTPN4-202ENST00000420482 TECPR2O15040 1411 aa31.39■■■□□ 2.62
PTPN4-202ENST00000420482 CDK12Q9NYV4 1490 aaPredicted RBP31.39■■■□□ 2.62
PTPN4-202ENST00000420482 PNPLA6Q8IY17 1366 aa31.38■■■□□ 2.61
PTPN4-202ENST00000420482 HRCP23327 699 aa31.37■■■□□ 2.61
Retrieved 100 of 20,778 RNA–protein pairs in 37.3 ms