RNA–Protein interactions for RNA: ENST00000417656.6

SKA1-203, Transcript of spindle and kinetochore associated complex subunit 1, humanhuman

TSL 2 BASIC

Gene SKA1, Length 1,095 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SKA1-203ENST00000417656 NPHP4O75161 1426 aaPredicted RBP18.47■□□□□ 0.55
SKA1-203ENST00000417656 MED14O60244 1454 aa18.46■□□□□ 0.55
SKA1-203ENST00000417656 ANKLE2Q86XL3 938 aa18.46■□□□□ 0.55
SKA1-203ENST00000417656 ZFYVE9O95405 1425 aa18.46■□□□□ 0.55
SKA1-203ENST00000417656 CCDC144AA2RUR9 1427 aa18.45■□□□□ 0.54
SKA1-203ENST00000417656 RIMS2Q9UQ26 1411 aa18.45■□□□□ 0.54
SKA1-203ENST00000417656 LTKP29376 864 aa18.43■□□□□ 0.54
SKA1-203ENST00000417656 TXNDC2Q86VQ3 553 aa18.42■□□□□ 0.54
SKA1-203ENST00000417656 NEXMIFQ5QGS0 1516 aa18.42■□□□□ 0.54
SKA1-203ENST00000417656 EID1Q9Y6B2 187 aa18.41■□□□□ 0.54
SKA1-203ENST00000417656 PPLO60437 1756 aa18.38■□□□□ 0.53
SKA1-203ENST00000417656 ANKRD30BQ9BXX2 1392 aa18.38■□□□□ 0.53
SKA1-203ENST00000417656 IFT172Q9UG01 1749 aa18.37■□□□□ 0.53
SKA1-203ENST00000417656 ZNF326Q5BKZ1 582 aaKnown RBP18.37■□□□□ 0.53
SKA1-203ENST00000417656 SPATA31E1Q6ZUB1 1445 aa18.37■□□□□ 0.53
SKA1-203ENST00000417656 PPP1R15AO75807 674 aaPredicted RBP18.36■□□□□ 0.53
SKA1-203ENST00000417656 NUTM2DQ5VT03 806 aaPredicted RBP18.36■□□□□ 0.53
SKA1-203ENST00000417656 PLEKHG1Q9ULL1 1385 aa18.36■□□□□ 0.53
SKA1-203ENST00000417656 LTBP4Q8N2S1 1624 aa18.35■□□□□ 0.53
SKA1-203ENST00000417656 NRXN3Q9Y4C0 1643 aa18.34■□□□□ 0.53
SKA1-203ENST00000417656 ZNF335Q9H4Z2 1342 aaPredicted RBP18.34■□□□□ 0.53
SKA1-203ENST00000417656 STRCP1A6NGW2 1772 aa18.33■□□□□ 0.53
SKA1-203ENST00000417656 ABCF1Q8NE71 845 aaKnown RBP eCLIP18.33■□□□□ 0.52
SKA1-203ENST00000417656 DIP2AQ14689 1571 aa18.32■□□□□ 0.52
SKA1-203ENST00000417656 SETBP1Q9Y6X0 1596 aa18.32■□□□□ 0.52
SKA1-203ENST00000417656 DHX57Q6P158 1386 aaKnown RBP18.31■□□□□ 0.52
SKA1-203ENST00000417656 HDGFP51858 240 aaKnown RBP18.31■□□□□ 0.52
SKA1-203ENST00000417656 PCGF6Q9BYE7 350 aa18.31■□□□□ 0.52
SKA1-203ENST00000417656 ADAMTS13Q76LX8 1427 aa18.3■□□□□ 0.52
SKA1-203ENST00000417656 BCANQ96GW7 911 aa18.29■□□□□ 0.52
SKA1-203ENST00000417656 RGL3Q3MIN7 710 aa18.28■□□□□ 0.52
SKA1-203ENST00000417656 SLC26A8Q96RN1 970 aa18.28■□□□□ 0.52
SKA1-203ENST00000417656 NWD1Q149M9 1564 aa18.28■□□□□ 0.52
SKA1-203ENST00000417656 CPS1P31327 1500 aa18.27■□□□□ 0.51
SKA1-203ENST00000417656 SETD1AO15047 1707 aaKnown RBP18.26■□□□□ 0.51
SKA1-203ENST00000417656 RPGRIP1LQ68CZ1 1315 aa18.26■□□□□ 0.51
SKA1-203ENST00000417656 CHD2O14647 1828 aaKnown RBP18.24■□□□□ 0.51
SKA1-203ENST00000417656 MYOM2P54296 1465 aa18.24■□□□□ 0.51
SKA1-203ENST00000417656 XRN1Q8IZH2 1706 aaKnown RBP18.21■□□□□ 0.51
SKA1-203ENST00000417656 ALKQ9UM73 1620 aa18.21■□□□□ 0.51
SKA1-203ENST00000417656 VGFO15240 615 aaPredicted RBP18.21■□□□□ 0.51
SKA1-203ENST00000417656 CERKQ8TCT0 537 aa18.21■□□□□ 0.51
SKA1-203ENST00000417656 ADGRF5Q8IZF2 1346 aa18.21■□□□□ 0.51
SKA1-203ENST00000417656 NKTRP30414 1462 aaKnown RBP18.2■□□□□ 0.5
SKA1-203ENST00000417656 TBX22Q9Y458 520 aa18.2■□□□□ 0.5
SKA1-203ENST00000417656 PIK3C2GO75747 1445 aa18.2■□□□□ 0.5
SKA1-203ENST00000417656 NRXN1Q9ULB1 1477 aa18.2■□□□□ 0.5
SKA1-203ENST00000417656 LRRC7Q96NW7 1537 aa18.19■□□□□ 0.5
SKA1-203ENST00000417656 XIRP1Q702N8 1843 aaKnown RBP18.19■□□□□ 0.5
SKA1-203ENST00000417656 IQSEC2Q5JU85 1478 aa18.19■□□□□ 0.5
SKA1-203ENST00000417656 LAMC1P11047 1609 aa18.18■□□□□ 0.5
SKA1-203ENST00000417656 METP08581 1390 aa18.17■□□□□ 0.5
SKA1-203ENST00000417656 PIK3R4Q99570 1358 aa18.17■□□□□ 0.5
SKA1-203ENST00000417656 PTPRUQ92729 1446 aa18.17■□□□□ 0.5
SKA1-203ENST00000417656 ASXL1Q8IXJ9 1541 aa18.17■□□□□ 0.5
SKA1-203ENST00000417656 KCNA6P17658 529 aa18.16■□□□□ 0.5
SKA1-203ENST00000417656 SIN3AQ96ST3 1273 aa18.16■□□□□ 0.5
SKA1-203ENST00000417656 DCAF11Q8TEB1 546 aa18.12■□□□□ 0.49
SKA1-203ENST00000417656 NEUROD1Q13562 356 aa18.11■□□□□ 0.49
SKA1-203ENST00000417656 KDM2AQ9Y2K7 1162 aa18.11■□□□□ 0.49
SKA1-203ENST00000417656 TMEM94Q12767 1356 aa18.11■□□□□ 0.49
SKA1-203ENST00000417656 KNDC1Q76NI1 1749 aa18.11■□□□□ 0.49
SKA1-203ENST00000417656 AMOTL2Q9Y2J4 779 aa18.09■□□□□ 0.49
SKA1-203ENST00000417656 PRAG1Q86YV5 1406 aa18.08■□□□□ 0.49
SKA1-203ENST00000417656 PROSER2Q86WR7 435 aaPredicted RBP18.08■□□□□ 0.48
SKA1-203ENST00000417656 RBM33Q96EV2 1170 aaKnown RBP18.08■□□□□ 0.48
SKA1-203ENST00000417656 PTCH1Q13635 1447 aa18.07■□□□□ 0.48
SKA1-203ENST00000417656 ADGRB1O14514 1584 aa18.07■□□□□ 0.48
SKA1-203ENST00000417656 NALCNQ8IZF0 1738 aa18.06■□□□□ 0.48
SKA1-203ENST00000417656 CFAP70Q5T0N1 1121 aa18.06■□□□□ 0.48
SKA1-203ENST00000417656 KIAA1210Q9ULL0 1709 aa18.06■□□□□ 0.48
SKA1-203ENST00000417656 L3MBTL2Q969R5 705 aa18.05■□□□□ 0.48
SKA1-203ENST00000417656 C14orf93Q9H972 538 aaKnown RBP18.05■□□□□ 0.48
SKA1-203ENST00000417656 FBXO41Q8TF61 875 aa18.04■□□□□ 0.48
SKA1-203ENST00000417656 STAC3Q96MF2 364 aa18.04■□□□□ 0.48
SKA1-203ENST00000417656 TECPR2O15040 1411 aa18.04■□□□□ 0.48
SKA1-203ENST00000417656 YTHDC2Q9H6S0 1430 aaKnown RBP18.04■□□□□ 0.48
SKA1-203ENST00000417656 LRPPRCP42704 1394 aaKnown RBP18.04■□□□□ 0.48
SKA1-203ENST00000417656 ROBO2Q9HCK4 1378 aa18.04■□□□□ 0.48
SKA1-203ENST00000417656 TMEM132EQ6IEE7 984 aa18.03■□□□□ 0.48
SKA1-203ENST00000417656 TONSLQ96HA7 1378 aa18.03■□□□□ 0.48
SKA1-203ENST00000417656 UBAP1LF5GYI3 381 aa18.02■□□□□ 0.48
SKA1-203ENST00000417656 SIPA1L2Q9P2F8 1722 aaPredicted RBP18.02■□□□□ 0.48
SKA1-203ENST00000417656 TRPM1Q7Z4N2 1603 aa18.01■□□□□ 0.47
SKA1-203ENST00000417656 NCOA3Q9Y6Q9 1424 aa18.01■□□□□ 0.47
SKA1-203ENST00000417656 MSH6P52701 1360 aa18.01■□□□□ 0.47
SKA1-203ENST00000417656 STK26Q9P289 416 aa18■□□□□ 0.47
SKA1-203ENST00000417656 ADGRL3Q9HAR2 1447 aa17.99■□□□□ 0.47
SKA1-203ENST00000417656 C14orf37Q86TY3 774 aa17.99■□□□□ 0.47
SKA1-203ENST00000417656 DLC1Q96QB1 1528 aa17.98■□□□□ 0.47
SKA1-203ENST00000417656 ARHGEF28Q8N1W1 1705 aaKnown RBP17.98■□□□□ 0.47
SKA1-203ENST00000417656 PPP4R3CPQ6ZMV5 832 aa17.98■□□□□ 0.47
SKA1-203ENST00000417656 ABCC11Q96J66 1382 aa17.98■□□□□ 0.47
SKA1-203ENST00000417656 CLSPNQ9HAW4 1339 aa17.98■□□□□ 0.47
SKA1-203ENST00000417656 ILDR1Q86SU0 546 aaPredicted RBP17.97■□□□□ 0.47
SKA1-203ENST00000417656 CCER1Q8TC90 406 aaPredicted RBP17.97■□□□□ 0.47
SKA1-203ENST00000417656 PLEKHH1Q9ULM0 1364 aa17.96■□□□□ 0.47
SKA1-203ENST00000417656 TOM1O60784 492 aa17.95■□□□□ 0.46
SKA1-203ENST00000417656 DCCP43146 1447 aa17.95■□□□□ 0.46
SKA1-203ENST00000417656 FAM135BQ49AJ0 1406 aa17.95■□□□□ 0.46
Retrieved 100 of 20,778 RNA–protein pairs in 11.5 ms