RNA–Protein interactions for RNA: ENST00000416204.1

LINC01238-201, Transcript of long intergenic non-protein coding RNA 1238, humanhuman

TSL 2 BASIC

Gene LINC01238, Length 590 nt, Biotype lincRNA, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LINC01238-201ENST00000416204 PPP1R15AO75807 674 aaPredicted RBP14.75□□□□□ -0.05
LINC01238-201ENST00000416204 ADGRB3O60242 1522 aa14.75□□□□□ -0.05
LINC01238-201ENST00000416204 NKTRP30414 1462 aaKnown RBP14.75□□□□□ -0.05
LINC01238-201ENST00000416204 NWD1Q149M9 1564 aa14.74□□□□□ -0.05
LINC01238-201ENST00000416204 UPF1Q92900 1129 aaKnown RBP eCLIP14.74□□□□□ -0.05
LINC01238-201ENST00000416204 PTPN23Q9H3S7 1636 aa14.74□□□□□ -0.05
LINC01238-201ENST00000416204 SRCAPQ6ZRS2 3230 aa14.72□□□□□ -0.05
LINC01238-201ENST00000416204 NUTM2BA6NNL0 878 aaPredicted RBP14.72□□□□□ -0.05
LINC01238-201ENST00000416204 NUTM2EB1AL46 878 aaPredicted RBP14.72□□□□□ -0.05
LINC01238-201ENST00000416204 CHGAP10645 457 aaKnown RBP14.72□□□□□ -0.05
LINC01238-201ENST00000416204 NUTM2AQ8IVF1 878 aaPredicted RBP14.72□□□□□ -0.05
LINC01238-201ENST00000416204 COL16A1Q07092 1604 aaPredicted RBP14.72□□□□□ -0.05
LINC01238-201ENST00000416204 NOS1P29475 1434 aa14.72□□□□□ -0.05
LINC01238-201ENST00000416204 LMTK2Q8IWU2 1503 aa14.71□□□□□ -0.05
LINC01238-201ENST00000416204 ANKRD30AQ9BXX3 1397 aa14.71□□□□□ -0.06
LINC01238-201ENST00000416204 RIMS2Q9UQ26 1411 aa14.7□□□□□ -0.06
LINC01238-201ENST00000416204 KDM5AP29375 1690 aaKnown RBP14.7□□□□□ -0.06
LINC01238-201ENST00000416204 ZFYVE9O95405 1425 aa14.69□□□□□ -0.06
LINC01238-201ENST00000416204 SLC52A1Q9NWF4 448 aa14.69□□□□□ -0.06
LINC01238-201ENST00000416204 PLEKHG1Q9ULL1 1385 aa14.69□□□□□ -0.06
LINC01238-201ENST00000416204 ZNF772Q68DY9 489 aaPredicted RBP14.68□□□□□ -0.06
LINC01238-201ENST00000416204 SPATA31A6Q5VVP1 1343 aa14.67□□□□□ -0.06
LINC01238-201ENST00000416204 FGD6Q6ZV73 1430 aa14.67□□□□□ -0.06
LINC01238-201ENST00000416204 MYO5BQ9ULV0 1848 aa14.67□□□□□ -0.06
LINC01238-201ENST00000416204 ATF3P18847 181 aa14.66□□□□□ -0.06
LINC01238-201ENST00000416204 RXRBP28702 533 aa14.66□□□□□ -0.06
LINC01238-201ENST00000416204 CHD2O14647 1828 aaKnown RBP14.66□□□□□ -0.06
LINC01238-201ENST00000416204 GCC2Q8IWJ2 1684 aa14.65□□□□□ -0.06
LINC01238-201ENST00000416204 APLP2Q06481 763 aa14.64□□□□□ -0.07
LINC01238-201ENST00000416204 FAM50AQ14320 339 aaKnown RBP14.64□□□□□ -0.07
LINC01238-201ENST00000416204 BRINP3Q76B58 766 aa14.63□□□□□ -0.07
LINC01238-201ENST00000416204 CADPS2Q86UW7 1296 aa14.63□□□□□ -0.07
LINC01238-201ENST00000416204 TBX22Q9Y458 520 aa14.63□□□□□ -0.07
LINC01238-201ENST00000416204 SIPA1L2Q9P2F8 1722 aaPredicted RBP14.63□□□□□ -0.07
LINC01238-201ENST00000416204 AFF2P51816 1311 aa14.63□□□□□ -0.07
LINC01238-201ENST00000416204 ADAMTS13Q76LX8 1427 aa14.62□□□□□ -0.07
LINC01238-201ENST00000416204 DDX17Q92841 729 aaKnown RBP14.62□□□□□ -0.07
LINC01238-201ENST00000416204 C19orf44Q9H6X5 657 aa14.62□□□□□ -0.07
LINC01238-201ENST00000416204 TMEM131LA2VDJ0 1609 aa14.62□□□□□ -0.07
LINC01238-201ENST00000416204 AHDC1Q5TGY3 1603 aaPredicted RBP14.62□□□□□ -0.07
LINC01238-201ENST00000416204 HDGFP51858 240 aaKnown RBP14.61□□□□□ -0.07
LINC01238-201ENST00000416204 AMOTL2Q9Y2J4 779 aa14.61□□□□□ -0.07
LINC01238-201ENST00000416204 PTPRUQ92729 1446 aa14.6□□□□□ -0.07
LINC01238-201ENST00000416204 ANKRD50Q9ULJ7 1429 aa14.6□□□□□ -0.07
LINC01238-201ENST00000416204 C8orf37Q96NL8 207 aa14.6□□□□□ -0.07
LINC01238-201ENST00000416204 SHPRHQ149N8 1683 aa14.6□□□□□ -0.07
LINC01238-201ENST00000416204 ABCF1Q8NE71 845 aaKnown RBP eCLIP14.59□□□□□ -0.07
LINC01238-201ENST00000416204 DIP2AQ14689 1571 aa14.59□□□□□ -0.07
LINC01238-201ENST00000416204 RPRD2Q5VT52 1461 aaKnown RBP14.58□□□□□ -0.08
LINC01238-201ENST00000416204 NCOA3Q9Y6Q9 1424 aa14.58□□□□□ -0.08
LINC01238-201ENST00000416204 RGS12O14924 1447 aa14.57□□□□□ -0.08
LINC01238-201ENST00000416204 ADGRL2O95490 1459 aa14.57□□□□□ -0.08
LINC01238-201ENST00000416204 ASXL1Q8IXJ9 1541 aa14.56□□□□□ -0.08
LINC01238-201ENST00000416204 QTRT2Q9H974 415 aaKnown RBP14.56□□□□□ -0.08
LINC01238-201ENST00000416204 ADAMTS2O95450 1211 aa14.55□□□□□ -0.08
LINC01238-201ENST00000416204 TRPM2O94759 1503 aa14.53□□□□□ -0.08
LINC01238-201ENST00000416204 E9PCH4 1651 aa14.52□□□□□ -0.08
LINC01238-201ENST00000416204 CDK12Q9NYV4 1490 aaPredicted RBP14.52□□□□□ -0.08
LINC01238-201ENST00000416204 MST1RQ04912 1400 aa14.52□□□□□ -0.08
LINC01238-201ENST00000416204 PIK3R4Q99570 1358 aa14.52□□□□□ -0.08
LINC01238-201ENST00000416204 UNC13BO14795 1591 aa14.51□□□□□ -0.09
LINC01238-201ENST00000416204 SETD5Q9C0A6 1442 aa14.51□□□□□ -0.09
LINC01238-201ENST00000416204 PNPLA6Q8IY17 1366 aa14.51□□□□□ -0.09
LINC01238-201ENST00000416204 RBM6P78332 1123 aaKnown RBP14.51□□□□□ -0.09
LINC01238-201ENST00000416204 NGLY1Q96IV0 654 aa14.51□□□□□ -0.09
LINC01238-201ENST00000416204 METP08581 1390 aa14.5□□□□□ -0.09
LINC01238-201ENST00000416204 ZNF326Q5BKZ1 582 aaKnown RBP14.5□□□□□ -0.09
LINC01238-201ENST00000416204 LRRC59Q96AG4 307 aaKnown RBP14.5□□□□□ -0.09
LINC01238-201ENST00000416204 ITGAEP38570 1179 aa14.49□□□□□ -0.09
LINC01238-201ENST00000416204 NHSL1Q5SYE7 1610 aa14.48□□□□□ -0.09
LINC01238-201ENST00000416204 NRXN3Q9Y4C0 1643 aa14.48□□□□□ -0.09
LINC01238-201ENST00000416204 NUP155O75694 1391 aa14.47□□□□□ -0.09
LINC01238-201ENST00000416204 XRN1Q8IZH2 1706 aaKnown RBP14.47□□□□□ -0.09
LINC01238-201ENST00000416204 DCCP43146 1447 aa14.47□□□□□ -0.09
LINC01238-201ENST00000416204 EP400Q96L91 3159 aa14.46□□□□□ -0.09
LINC01238-201ENST00000416204 USP21Q9UK80 565 aa14.45□□□□□ -0.1
LINC01238-201ENST00000416204 ADGRL3Q9HAR2 1447 aa14.44□□□□□ -0.1
LINC01238-201ENST00000416204 ORAI2Q96SN7 254 aa14.44□□□□□ -0.1
LINC01238-201ENST00000416204 ATAD2Q6PL18 1390 aa14.44□□□□□ -0.1
LINC01238-201ENST00000416204 IQGAP3Q86VI3 1631 aa14.44□□□□□ -0.1
LINC01238-201ENST00000416204 NALCNQ8IZF0 1738 aa14.43□□□□□ -0.1
LINC01238-201ENST00000416204 SETBP1Q9Y6X0 1596 aa14.43□□□□□ -0.1
LINC01238-201ENST00000416204 C1orf167Q5SNV9 1468 aa14.42□□□□□ -0.1
LINC01238-201ENST00000416204 PPARGC1BQ86YN6 1023 aaKnown RBP14.4□□□□□ -0.1
LINC01238-201ENST00000416204 ZRANB1Q9UGI0 708 aa14.4□□□□□ -0.1
LINC01238-201ENST00000416204 TRPC5Q9UL62 973 aaPredicted RBP14.4□□□□□ -0.1
LINC01238-201ENST00000416204 XPCQ01831 940 aaPredicted RBP14.39□□□□□ -0.11
LINC01238-201ENST00000416204 ROBO2Q9HCK4 1378 aa14.38□□□□□ -0.11
LINC01238-201ENST00000416204 ROCK1Q13464 1354 aa14.37□□□□□ -0.11
LINC01238-201ENST00000416204 SOS2Q07890 1332 aaPredicted RBP14.37□□□□□ -0.11
LINC01238-201ENST00000416204 ATRNO75882 1429 aa14.36□□□□□ -0.11
LINC01238-201ENST00000416204 NEXMIFQ5QGS0 1516 aa14.36□□□□□ -0.11
LINC01238-201ENST00000416204 SPHKAPQ2M3C7 1700 aa14.35□□□□□ -0.11
LINC01238-201ENST00000416204 FNBP4Q8N3X1 1017 aaPredicted RBP14.35□□□□□ -0.11
LINC01238-201ENST00000416204 CLTCL1P53675 1640 aa14.34□□□□□ -0.11
LINC01238-201ENST00000416204 NUTM2FA1L443 756 aa14.34□□□□□ -0.11
LINC01238-201ENST00000416204 PLEKHG5O94827 1062 aa14.34□□□□□ -0.11
LINC01238-201ENST00000416204 ESCO1Q5FWF5 840 aa14.33□□□□□ -0.12
LINC01238-201ENST00000416204 PTCH1Q13635 1447 aa14.32□□□□□ -0.12
LINC01238-201ENST00000416204 BCL9LQ86UU0 1499 aa14.31□□□□□ -0.12
Retrieved 100 of 20,778 RNA–protein pairs in 11.1 ms