RNA–Protein interactions for RNA: ENST00000413899.1

HMGB1P11-201, Transcript of high mobility group box 1 pseudogene 11, humanhuman

BASIC

Gene HMGB1P11, Length 637 nt, Biotype processed pseudogene.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1P11-201ENST00000413899 FAM217BQ9NTX9 383 aaPredicted RBP8.45□□□□□ -1.06
HMGB1P11-201ENST00000413899 PCDH10Q9P2E7 1040 aa8.44□□□□□ -1.06
HMGB1P11-201ENST00000413899 SSTR3P32745 418 aaPredicted RBP8.43□□□□□ -1.06
HMGB1P11-201ENST00000413899 ZFRQ96KR1 1074 aaKnown RBP8.43□□□□□ -1.06
HMGB1P11-201ENST00000413899 MS4A1P11836 297 aa8.42□□□□□ -1.06
HMGB1P11-201ENST00000413899 SWT1Q5T5J6 900 aaKnown RBP8.42□□□□□ -1.06
HMGB1P11-201ENST00000413899 SULF1Q8IWU6 871 aa8.42□□□□□ -1.06
HMGB1P11-201ENST00000413899 HDGFP51858 240 aaKnown RBP8.41□□□□□ -1.06
HMGB1P11-201ENST00000413899 DDRGK1Q96HY6 314 aa8.41□□□□□ -1.06
HMGB1P11-201ENST00000413899 STAC3Q96MF2 364 aa8.41□□□□□ -1.06
HMGB1P11-201ENST00000413899 TMEM132AQ24JP5 1023 aa8.4□□□□□ -1.06
HMGB1P11-201ENST00000413899 SAMD7Q7Z3H4 446 aa8.4□□□□□ -1.06
HMGB1P11-201ENST00000413899 SLF2Q8IX21 1173 aa8.4□□□□□ -1.06
HMGB1P11-201ENST00000413899 FAM117AQ9C073 453 aa8.4□□□□□ -1.06
HMGB1P11-201ENST00000413899 PLEKHG3A1L390 1219 aa8.39□□□□□ -1.07
HMGB1P11-201ENST00000413899 CD46P15529 392 aa8.39□□□□□ -1.07
HMGB1P11-201ENST00000413899 SLC4A3P48751 1232 aa8.39□□□□□ -1.07
HMGB1P11-201ENST00000413899 ANKK1Q8NFD2 765 aa8.38□□□□□ -1.07
HMGB1P11-201ENST00000413899 GOLGA8CPA6NN73 597 aa8.37□□□□□ -1.07
HMGB1P11-201ENST00000413899 DDX11L8A8MPP1 907 aa8.37□□□□□ -1.07
HMGB1P11-201ENST00000413899 RSPH4AQ5TD94 716 aa8.37□□□□□ -1.07
HMGB1P11-201ENST00000413899 LRCH3Q96II8 777 aa8.37□□□□□ -1.07
HMGB1P11-201ENST00000413899 BEGAINQ9BUH8 593 aa8.37□□□□□ -1.07
HMGB1P11-201ENST00000413899 SOWAHBA6NEL2 793 aa8.36□□□□□ -1.07
HMGB1P11-201ENST00000413899 SLC10A3P09131 477 aa8.36□□□□□ -1.07
HMGB1P11-201ENST00000413899 IL27Q8NEV9 243 aa8.36□□□□□ -1.07
HMGB1P11-201ENST00000413899 NECTIN2Q92692 538 aa8.36□□□□□ -1.07
HMGB1P11-201ENST00000413899 CDKN2AIPQ9NXV6 580 aaPredicted RBP8.36□□□□□ -1.07
HMGB1P11-201ENST00000413899 GCGRP47871 477 aa8.34□□□□□ -1.07
HMGB1P11-201ENST00000413899 RDH13Q8NBN7 331 aa8.34□□□□□ -1.07
HMGB1P11-201ENST00000413899 WNT2BQ93097 391 aa8.34□□□□□ -1.07
HMGB1P11-201ENST00000413899 GOPCQ9HD26 462 aa8.34□□□□□ -1.07
HMGB1P11-201ENST00000413899 DIXDC1Q155Q3 683 aa8.33□□□□□ -1.08
HMGB1P11-201ENST00000413899 SH3D19Q5HYK7 790 aa8.32□□□□□ -1.08
HMGB1P11-201ENST00000413899 RSPH6AQ9H0K4 717 aa8.32□□□□□ -1.08
HMGB1P11-201ENST00000413899 TSR3Q9UJK0 312 aaKnown RBP8.32□□□□□ -1.08
HMGB1P11-201ENST00000413899 BCAMP50895 628 aa8.31□□□□□ -1.08
HMGB1P11-201ENST00000413899 THSD4Q6ZMP0 1018 aa8.31□□□□□ -1.08
HMGB1P11-201ENST00000413899 CFHP08603 1231 aa8.3□□□□□ -1.08
HMGB1P11-201ENST00000413899 USP46P62068 366 aa8.3□□□□□ -1.08
HMGB1P11-201ENST00000413899 SPIRE2Q8WWL2 714 aa8.3□□□□□ -1.08
HMGB1P11-201ENST00000413899 TBC1D2Q9BYX2 928 aa8.3□□□□□ -1.08
HMGB1P11-201ENST00000413899 RNF40O75150 1001 aa8.29□□□□□ -1.08
HMGB1P11-201ENST00000413899 KDM4AO75164 1064 aa8.29□□□□□ -1.08
HMGB1P11-201ENST00000413899 PPP4CP60510 307 aa8.29□□□□□ -1.08
HMGB1P11-201ENST00000413899 NUTM1Q86Y26 1132 aa8.29□□□□□ -1.08
HMGB1P11-201ENST00000413899 PRR14Q9BWN1 585 aa8.29□□□□□ -1.08
HMGB1P11-201ENST00000413899 MYT1LQ9UL68 1186 aa8.29□□□□□ -1.08
HMGB1P11-201ENST00000413899 HPS5Q9UPZ3 1129 aa8.29□□□□□ -1.08
HMGB1P11-201ENST00000413899 GJA5P36382 358 aa8.28□□□□□ -1.08
HMGB1P11-201ENST00000413899 SKIV2LQ15477 1246 aaKnown RBP8.28□□□□□ -1.08
HMGB1P11-201ENST00000413899 KMT5BQ4FZB7 885 aa8.28□□□□□ -1.08
HMGB1P11-201ENST00000413899 SPNS2Q8IVW8 549 aa8.28□□□□□ -1.08
HMGB1P11-201ENST00000413899 KCTD12Q96CX2 325 aaKnown RBP8.28□□□□□ -1.08
HMGB1P11-201ENST00000413899 ACTN4O43707 911 aaKnown RBP8.27□□□□□ -1.09
HMGB1P11-201ENST00000413899 MYSM1Q5VVJ2 828 aa8.27□□□□□ -1.09
HMGB1P11-201ENST00000413899 NYAP1Q6ZVC0 841 aa8.27□□□□□ -1.09
HMGB1P11-201ENST00000413899 SPTLC1O15269 473 aa8.26□□□□□ -1.09
HMGB1P11-201ENST00000413899 TUSC1Q2TAM9 212 aa8.26□□□□□ -1.09
HMGB1P11-201ENST00000413899 HOXA2O43364 376 aa8.25□□□□□ -1.09
HMGB1P11-201ENST00000413899 WBP1LQ9NX94 342 aa8.25□□□□□ -1.09
HMGB1P11-201ENST00000413899 APLP1P51693 650 aa8.24□□□□□ -1.09
HMGB1P11-201ENST00000413899 FUT2Q10981 343 aa8.24□□□□□ -1.09
HMGB1P11-201ENST00000413899 RSBN1LQ6PCB5 846 aaPredicted RBP8.24□□□□□ -1.09
HMGB1P11-201ENST00000413899 MOXD2PA6NHM9 499 aa8.23□□□□□ -1.09
HMGB1P11-201ENST00000413899 ATP6V1AP38606 617 aa8.23□□□□□ -1.09
HMGB1P11-201ENST00000413899 CLK2P49760 499 aaKnown RBP8.23□□□□□ -1.09
HMGB1P11-201ENST00000413899 GRIPAP1Q4V328 841 aa8.23□□□□□ -1.09
HMGB1P11-201ENST00000413899 RIC3Q7Z5B4 369 aa8.23□□□□□ -1.09
HMGB1P11-201ENST00000413899 PCMTD1Q96MG8 357 aaPredicted RBP8.23□□□□□ -1.09
HMGB1P11-201ENST00000413899 RNF166Q96A37 237 aaPredicted RBP8.22□□□□□ -1.09
HMGB1P11-201ENST00000413899 GNL3Q9BVP2 549 aaKnown RBP eCLIP8.22□□□□□ -1.09
HMGB1P11-201ENST00000413899 NDUFV2P19404 249 aa8.21□□□□□ -1.1
HMGB1P11-201ENST00000413899 MORN1Q5T089 497 aa8.21□□□□□ -1.1
HMGB1P11-201ENST00000413899 PLSCR2Q9NRY7 297 aa8.21□□□□□ -1.1
HMGB1P11-201ENST00000413899 POLR3EQ9NVU0 708 aa8.21□□□□□ -1.1
HMGB1P11-201ENST00000413899 LIMD1Q9UGP4 676 aa8.21□□□□□ -1.1
HMGB1P11-201ENST00000413899 FDX1P10109 184 aa8.19□□□□□ -1.1
HMGB1P11-201ENST00000413899 PRPF38BQ5VTL8 546 aaKnown RBP8.19□□□□□ -1.1
HMGB1P11-201ENST00000413899 PROCA1Q8NCQ7 364 aaPredicted RBP8.19□□□□□ -1.1
HMGB1P11-201ENST00000413899 PCDHB3Q9Y5E6 796 aa8.19□□□□□ -1.1
HMGB1P11-201ENST00000413899 PTPN5P54829 565 aa8.18□□□□□ -1.1
HMGB1P11-201ENST00000413899 HCSTQ9UBK5 93 aa8.18□□□□□ -1.1
HMGB1P11-201ENST00000413899 PCDHGC3Q9UN70 934 aa8.18□□□□□ -1.1
HMGB1P11-201ENST00000413899 SALL2Q9Y467 1007 aaPredicted RBP8.18□□□□□ -1.1
HMGB1P11-201ENST00000413899 LILRB3O75022 631 aa8.17□□□□□ -1.1
HMGB1P11-201ENST00000413899 PPP2R2DQ66LE6 453 aa8.17□□□□□ -1.1
HMGB1P11-201ENST00000413899 HLA-CQ95604 372 aa8.17□□□□□ -1.1
HMGB1P11-201ENST00000413899 SLC27A5Q9Y2P5 690 aa8.17□□□□□ -1.1
HMGB1P11-201ENST00000413899 PCDHB15Q9Y5E8 787 aa8.17□□□□□ -1.1
HMGB1P11-201ENST00000413899 NR1I2O75469 434 aa8.16□□□□□ -1.1
HMGB1P11-201ENST00000413899 GUCA2AQ02747 115 aa8.16□□□□□ -1.1
HMGB1P11-201ENST00000413899 MMRN1Q13201 1228 aa8.16□□□□□ -1.1
HMGB1P11-201ENST00000413899 Q3C1V9 767 aa8.16□□□□□ -1.1
HMGB1P11-201ENST00000413899 PUS10Q3MIT2 529 aaKnown RBP8.16□□□□□ -1.1
HMGB1P11-201ENST00000413899 BLOC1S3Q6QNY0 202 aa8.15□□□□□ -1.1
HMGB1P11-201ENST00000413899 SPDYE5A6NIY4 337 aa8.14□□□□□ -1.11
HMGB1P11-201ENST00000413899 SCUBE3Q8IX30 993 aa8.14□□□□□ -1.11
HMGB1P11-201ENST00000413899 ZBTB3Q9H5J0 574 aa8.14□□□□□ -1.11
HMGB1P11-201ENST00000413899 GTF3C3Q9Y5Q9 886 aa8.14□□□□□ -1.11
Retrieved 100 of 20,778 RNA–protein pairs in 25.5 ms