RNA–Protein interactions for RNA: ENST00000413141.5

VPS41-204, Transcript of VPS41, HOPS complex subunit, humanhuman

TSL 4

Gene VPS41, Length 575 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS41-204ENST00000413141 KIAA1210Q9ULL0 1709 aa9.47□□□□□ -0.89
VPS41-204ENST00000413141 KDM2AQ9Y2K7 1162 aa9.46□□□□□ -0.9
VPS41-204ENST00000413141 DMRT2Q9Y5R5 561 aa9.46□□□□□ -0.9
VPS41-204ENST00000413141 IDI1Q13907 227 aa9.45□□□□□ -0.9
VPS41-204ENST00000413141 STAC3Q96MF2 364 aa9.45□□□□□ -0.9
VPS41-204ENST00000413141 GPRASP1Q5JY77 1395 aa9.45□□□□□ -0.9
VPS41-204ENST00000413141 TNRQ92752 1358 aa9.45□□□□□ -0.9
VPS41-204ENST00000413141 MYO3AQ8NEV4 1616 aa9.45□□□□□ -0.9
VPS41-204ENST00000413141 ROCK2O75116 1388 aaKnown RBP9.44□□□□□ -0.9
VPS41-204ENST00000413141 PIK3C2GO75747 1445 aa9.44□□□□□ -0.9
VPS41-204ENST00000413141 A2ML1A8K2U0 1454 aa9.44□□□□□ -0.9
VPS41-204ENST00000413141 NLRP1Q9C000 1473 aa9.44□□□□□ -0.9
VPS41-204ENST00000413141 UBR1Q8IWV7 1749 aa9.44□□□□□ -0.9
VPS41-204ENST00000413141 IQGAP1P46940 1657 aa9.43□□□□□ -0.9
VPS41-204ENST00000413141 USP47Q96K76 1375 aa9.43□□□□□ -0.9
VPS41-204ENST00000413141 RPGRIP1LQ68CZ1 1315 aa9.43□□□□□ -0.9
VPS41-204ENST00000413141 CHGAP10645 457 aaKnown RBP9.43□□□□□ -0.9
VPS41-204ENST00000413141 SETBP1Q9Y6X0 1596 aa9.41□□□□□ -0.9
VPS41-204ENST00000413141 ZFYVE9O95405 1425 aa9.41□□□□□ -0.9
VPS41-204ENST00000413141 ADGRF5Q8IZF2 1346 aa9.41□□□□□ -0.9
VPS41-204ENST00000413141 SCAF1Q9H7N4 1312 aaKnown RBP9.41□□□□□ -0.9
VPS41-204ENST00000413141 HSPA5P11021 654 aaKnown RBP9.41□□□□□ -0.9
VPS41-204ENST00000413141 EIF4G2P78344 907 aaKnown RBP eCLIP9.41□□□□□ -0.9
VPS41-204ENST00000413141 POLR1AO95602 1720 aaPredicted RBP9.41□□□□□ -0.9
VPS41-204ENST00000413141 ZNF142P52746 1687 aaPredicted RBP9.41□□□□□ -0.9
VPS41-204ENST00000413141 CACNB1Q02641 598 aaPredicted RBP9.4□□□□□ -0.9
VPS41-204ENST00000413141 CARD11Q9BXL7 1154 aa9.4□□□□□ -0.9
VPS41-204ENST00000413141 ADGRB1O14514 1584 aa9.4□□□□□ -0.9
VPS41-204ENST00000413141 CEP170BQ9Y4F5 1589 aaPredicted RBP9.39□□□□□ -0.91
VPS41-204ENST00000413141 CEBPAP49715 358 aaPredicted RBP9.39□□□□□ -0.91
VPS41-204ENST00000413141 HIRIP3Q9BW71 556 aaPredicted RBP9.39□□□□□ -0.91
VPS41-204ENST00000413141 RIMS2Q9UQ26 1411 aa9.39□□□□□ -0.91
VPS41-204ENST00000413141 ASXL1Q8IXJ9 1541 aa9.38□□□□□ -0.91
VPS41-204ENST00000413141 NBPF1Q3BBV0 1214 aa9.38□□□□□ -0.91
VPS41-204ENST00000413141 STAG3Q9UJ98 1225 aa9.38□□□□□ -0.91
VPS41-204ENST00000413141 SCAF11Q99590 1463 aaKnown RBP9.38□□□□□ -0.91
VPS41-204ENST00000413141 NRXN3Q9Y4C0 1643 aa9.38□□□□□ -0.91
VPS41-204ENST00000413141 SLIT1O75093 1534 aa9.37□□□□□ -0.91
VPS41-204ENST00000413141 SETD1AO15047 1707 aaKnown RBP9.37□□□□□ -0.91
VPS41-204ENST00000413141 PTPRMP28827 1452 aa9.37□□□□□ -0.91
VPS41-204ENST00000413141 VGFO15240 615 aaPredicted RBP9.37□□□□□ -0.91
VPS41-204ENST00000413141 PPP4R3CPQ6ZMV5 832 aa9.37□□□□□ -0.91
VPS41-204ENST00000413141 ARHGAP23Q9P227 1491 aa9.36□□□□□ -0.91
VPS41-204ENST00000413141 TMEM2Q9UHN6 1383 aa9.36□□□□□ -0.91
VPS41-204ENST00000413141 ALKQ9UM73 1620 aa9.35□□□□□ -0.91
VPS41-204ENST00000413141 MAPK8IP2Q13387 824 aaPredicted RBP9.35□□□□□ -0.91
VPS41-204ENST00000413141 CFAP70Q5T0N1 1121 aa9.35□□□□□ -0.91
VPS41-204ENST00000413141 NUTM2DQ5VT03 806 aaPredicted RBP9.35□□□□□ -0.91
VPS41-204ENST00000413141 DIEXFQ68CQ4 756 aaKnown RBP9.35□□□□□ -0.91
VPS41-204ENST00000413141 EIF3AQ14152 1382 aaKnown RBP9.35□□□□□ -0.91
VPS41-204ENST00000413141 ARHGEF28Q8N1W1 1705 aaKnown RBP9.34□□□□□ -0.91
VPS41-204ENST00000413141 C14orf93Q9H972 538 aaKnown RBP9.34□□□□□ -0.91
VPS41-204ENST00000413141 CCDC7Q96M83 1385 aa9.34□□□□□ -0.91
VPS41-204ENST00000413141 WASHC2AQ641Q2 1341 aa9.33□□□□□ -0.92
VPS41-204ENST00000413141 ST20-MTHFSA0A0A6YYL1 179 aa9.33□□□□□ -0.92
VPS41-204ENST00000413141 ABCF1Q8NE71 845 aaKnown RBP eCLIP9.32□□□□□ -0.92
VPS41-204ENST00000413141 QRICH2Q9H0J4 1663 aa9.32□□□□□ -0.92
VPS41-204ENST00000413141 KIF7Q2M1P5 1343 aa9.31□□□□□ -0.92
VPS41-204ENST00000413141 C11orf95C9JLR9 678 aaPredicted RBP9.31□□□□□ -0.92
VPS41-204ENST00000413141 PLEKHG1Q9ULL1 1385 aa9.31□□□□□ -0.92
VPS41-204ENST00000413141 DIP2AQ14689 1571 aa9.31□□□□□ -0.92
VPS41-204ENST00000413141 KNDC1Q76NI1 1749 aa9.31□□□□□ -0.92
VPS41-204ENST00000413141 TESK2Q96S53 571 aa9.3□□□□□ -0.92
VPS41-204ENST00000413141 ADAMTS13Q76LX8 1427 aa9.3□□□□□ -0.92
VPS41-204ENST00000413141 YTHDC2Q9H6S0 1430 aaKnown RBP9.3□□□□□ -0.92
VPS41-204ENST00000413141 DISP3Q9P2K9 1392 aa9.29□□□□□ -0.92
VPS41-204ENST00000413141 SBNO2Q9Y2G9 1366 aa9.29□□□□□ -0.92
VPS41-204ENST00000413141 HDGFP51858 240 aaKnown RBP9.29□□□□□ -0.92
VPS41-204ENST00000413141 DLC1Q96QB1 1528 aa9.29□□□□□ -0.92
VPS41-204ENST00000413141 MED14O60244 1454 aa9.28□□□□□ -0.92
VPS41-204ENST00000413141 CPS1P31327 1500 aa9.28□□□□□ -0.92
VPS41-204ENST00000413141 LTKP29376 864 aa9.28□□□□□ -0.92
VPS41-204ENST00000413141 DDX10Q13206 875 aaKnown RBP9.28□□□□□ -0.92
VPS41-204ENST00000413141 TMEM132EQ6IEE7 984 aa9.28□□□□□ -0.92
VPS41-204ENST00000413141 THEMISQ8N1K5 641 aaPredicted RBP9.28□□□□□ -0.92
VPS41-204ENST00000413141 SETD1BQ9UPS6 1966 aaKnown RBP9.28□□□□□ -0.92
VPS41-204ENST00000413141 LRPPRCP42704 1394 aaKnown RBP9.27□□□□□ -0.93
VPS41-204ENST00000413141 MYOM1P52179 1685 aa9.27□□□□□ -0.93
VPS41-204ENST00000413141 EID1Q9Y6B2 187 aa9.27□□□□□ -0.93
VPS41-204ENST00000413141 TECPR2O15040 1411 aa9.27□□□□□ -0.93
VPS41-204ENST00000413141 CENPJQ9HC77 1338 aaPredicted RBP9.27□□□□□ -0.93
VPS41-204ENST00000413141 METP08581 1390 aa9.26□□□□□ -0.93
VPS41-204ENST00000413141 TXNDC2Q86VQ3 553 aa9.26□□□□□ -0.93
VPS41-204ENST00000413141 TRAK1Q9UPV9 953 aa9.26□□□□□ -0.93
VPS41-204ENST00000413141 TULP4Q9NRJ4 1543 aa9.26□□□□□ -0.93
VPS41-204ENST00000413141 KDM4FA0A1W2PPD8 638 aa9.25□□□□□ -0.93
VPS41-204ENST00000413141 TMF1P82094 1093 aa9.25□□□□□ -0.93
VPS41-204ENST00000413141 XRN1Q8IZH2 1706 aaKnown RBP9.25□□□□□ -0.93
VPS41-204ENST00000413141 ABCC11Q96J66 1382 aa9.24□□□□□ -0.93
VPS41-204ENST00000413141 PTCH1Q13635 1447 aa9.22□□□□□ -0.93
VPS41-204ENST00000413141 FAM135BQ49AJ0 1406 aa9.22□□□□□ -0.93
VPS41-204ENST00000413141 PTPRUQ92729 1446 aa9.22□□□□□ -0.93
VPS41-204ENST00000413141 LMTK3Q96Q04 1460 aa9.22□□□□□ -0.93
VPS41-204ENST00000413141 ADGRB2O60241 1585 aa9.22□□□□□ -0.93
VPS41-204ENST00000413141 SLC24A1O60721 1099 aa9.22□□□□□ -0.93
VPS41-204ENST00000413141 KCNA4P22459 653 aa9.22□□□□□ -0.93
VPS41-204ENST00000413141 CDCA8Q53HL2 280 aa9.22□□□□□ -0.93
VPS41-204ENST00000413141 BCANQ96GW7 911 aa9.22□□□□□ -0.93
VPS41-204ENST00000413141 POLR3GLQ9BT43 218 aa9.22□□□□□ -0.93
VPS41-204ENST00000413141 STK26Q9P289 416 aa9.22□□□□□ -0.93
Retrieved 100 of 20,778 RNA–protein pairs in 45 ms