RNA–Protein interactions for RNA: ENST00000412141.1

LINC00963-201, long intergenic non-protein coding RNA 963, humanhuman

TSL 1 (best)

Gene LINC00963, Length 739 nt, Biotype lincRNA, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00963-201ENST00000412141 RBM33Q96EV2 1170 aaKnown RBP17.55■□□□□ 0.4
LINC00963-201ENST00000412141 E9PCH4 1651 aa17.53■□□□□ 0.4
LINC00963-201ENST00000412141 GCC2Q8IWJ2 1684 aa17.53■□□□□ 0.4
LINC00963-201ENST00000412141 TRIM52Q96A61 297 aa17.53■□□□□ 0.4
LINC00963-201ENST00000412141 MED1Q15648 1581 aaPredicted RBP17.53■□□□□ 0.4
LINC00963-201ENST00000412141 IQGAP3Q86VI3 1631 aa17.52■□□□□ 0.4
LINC00963-201ENST00000412141 RIMS2Q9UQ26 1411 aa17.52■□□□□ 0.4
LINC00963-201ENST00000412141 PROSER2Q86WR7 435 aaPredicted RBP17.51■□□□□ 0.39
LINC00963-201ENST00000412141 HDGFP51858 240 aaKnown RBP17.5■□□□□ 0.39
LINC00963-201ENST00000412141 MYO5BQ9ULV0 1848 aa17.49■□□□□ 0.39
LINC00963-201ENST00000412141 KDM5AP29375 1690 aaKnown RBP17.49■□□□□ 0.39
LINC00963-201ENST00000412141 NAIPQ13075 1403 aa17.49■□□□□ 0.39
LINC00963-201ENST00000412141 KCNA6P17658 529 aa17.49■□□□□ 0.39
LINC00963-201ENST00000412141 ZFYVE9O95405 1425 aa17.47■□□□□ 0.39
LINC00963-201ENST00000412141 TMEM131LA2VDJ0 1609 aa17.47■□□□□ 0.39
LINC00963-201ENST00000412141 ZNF326Q5BKZ1 582 aaKnown RBP17.47■□□□□ 0.39
LINC00963-201ENST00000412141 ABCF1Q8NE71 845 aaKnown RBP eCLIP17.47■□□□□ 0.39
LINC00963-201ENST00000412141 TMEM94Q12767 1356 aa17.46■□□□□ 0.39
LINC00963-201ENST00000412141 PLEKHG1Q9ULL1 1385 aa17.45■□□□□ 0.38
LINC00963-201ENST00000412141 XIRP1Q702N8 1843 aaKnown RBP17.43■□□□□ 0.38
LINC00963-201ENST00000412141 SLC4A1APQ9BWU0 796 aaKnown RBP17.42■□□□□ 0.38
LINC00963-201ENST00000412141 TBX22Q9Y458 520 aa17.41■□□□□ 0.38
LINC00963-201ENST00000412141 HFM1A2PYH4 1435 aa17.4■□□□□ 0.38
LINC00963-201ENST00000412141 FOXD1Q16676 465 aa17.4■□□□□ 0.38
LINC00963-201ENST00000412141 C14orf37Q86TY3 774 aa17.4■□□□□ 0.38
LINC00963-201ENST00000412141 SPHKAPQ2M3C7 1700 aa17.37■□□□□ 0.37
LINC00963-201ENST00000412141 ADAMTS13Q76LX8 1427 aa17.37■□□□□ 0.37
LINC00963-201ENST00000412141 PHF23Q9BUL5 403 aaPredicted RBP17.36■□□□□ 0.37
LINC00963-201ENST00000412141 AMOTL2Q9Y2J4 779 aa17.35■□□□□ 0.37
LINC00963-201ENST00000412141 MSH6P52701 1360 aa17.35■□□□□ 0.37
LINC00963-201ENST00000412141 NKTRP30414 1462 aaKnown RBP17.34■□□□□ 0.37
LINC00963-201ENST00000412141 NWD1Q149M9 1564 aa17.34■□□□□ 0.37
LINC00963-201ENST00000412141 CLTCL1P53675 1640 aa17.33■□□□□ 0.37
LINC00963-201ENST00000412141 FAM135BQ49AJ0 1406 aa17.33■□□□□ 0.36
LINC00963-201ENST00000412141 SLAIN2Q9P270 581 aa17.32■□□□□ 0.36
LINC00963-201ENST00000412141 CHD2O14647 1828 aaKnown RBP17.32■□□□□ 0.36
LINC00963-201ENST00000412141 TRPM2O94759 1503 aa17.31■□□□□ 0.36
LINC00963-201ENST00000412141 PTPRUQ92729 1446 aa17.3■□□□□ 0.36
LINC00963-201ENST00000412141 MPHOSPH9Q99550 1183 aa17.29■□□□□ 0.36
LINC00963-201ENST00000412141 ROBO1Q9Y6N7 1651 aa17.29■□□□□ 0.36
LINC00963-201ENST00000412141 METP08581 1390 aa17.28■□□□□ 0.36
LINC00963-201ENST00000412141 PIK3R4Q99570 1358 aa17.28■□□□□ 0.36
LINC00963-201ENST00000412141 ATF3P18847 181 aa17.27■□□□□ 0.36
LINC00963-201ENST00000412141 RGL3Q3MIN7 710 aa17.27■□□□□ 0.36
LINC00963-201ENST00000412141 DIP2AQ14689 1571 aa17.27■□□□□ 0.35
LINC00963-201ENST00000412141 C19orf44Q9H6X5 657 aa17.26■□□□□ 0.35
LINC00963-201ENST00000412141 RGS17Q9UGC6 210 aaPredicted RBP17.26■□□□□ 0.35
LINC00963-201ENST00000412141 NEXMIFQ5QGS0 1516 aa17.26■□□□□ 0.35
LINC00963-201ENST00000412141 VGFO15240 615 aaPredicted RBP17.25■□□□□ 0.35
LINC00963-201ENST00000412141 KIF1BO60333 1816 aa17.25■□□□□ 0.35
LINC00963-201ENST00000412141 NRXN3Q9Y4C0 1643 aa17.24■□□□□ 0.35
LINC00963-201ENST00000412141 SETD5Q9C0A6 1442 aa17.23■□□□□ 0.35
LINC00963-201ENST00000412141 CADPS2Q86UW7 1296 aa17.23■□□□□ 0.35
LINC00963-201ENST00000412141 SETBP1Q9Y6X0 1596 aa17.23■□□□□ 0.35
LINC00963-201ENST00000412141 CCDC144AA2RUR9 1427 aa17.21■□□□□ 0.34
LINC00963-201ENST00000412141 NCOA3Q9Y6Q9 1424 aa17.21■□□□□ 0.34
LINC00963-201ENST00000412141 RPGRIP1LQ68CZ1 1315 aa17.21■□□□□ 0.34
LINC00963-201ENST00000412141 SIPA1L2Q9P2F8 1722 aaPredicted RBP17.18■□□□□ 0.34
LINC00963-201ENST00000412141 RAB3GAP2Q9H2M9 1393 aa17.18■□□□□ 0.34
LINC00963-201ENST00000412141 ADGRF5Q8IZF2 1346 aa17.18■□□□□ 0.34
LINC00963-201ENST00000412141 PHLPP1O60346 1717 aa17.16■□□□□ 0.34
LINC00963-201ENST00000412141 XRN1Q8IZH2 1706 aaKnown RBP17.16■□□□□ 0.34
LINC00963-201ENST00000412141 STK26Q9P289 416 aa17.16■□□□□ 0.34
LINC00963-201ENST00000412141 POTEAQ6S8J7 498 aa17.15■□□□□ 0.34
LINC00963-201ENST00000412141 BRINP3Q76B58 766 aa17.15■□□□□ 0.34
LINC00963-201ENST00000412141 COL16A1Q07092 1604 aaPredicted RBP17.14■□□□□ 0.33
LINC00963-201ENST00000412141 ROBO2Q9HCK4 1378 aa17.14■□□□□ 0.33
LINC00963-201ENST00000412141 JCADQ9P266 1359 aa17.14■□□□□ 0.33
LINC00963-201ENST00000412141 TMEM132EQ6IEE7 984 aa17.13■□□□□ 0.33
LINC00963-201ENST00000412141 DDX17Q92841 729 aaKnown RBP17.13■□□□□ 0.33
LINC00963-201ENST00000412141 SPATA31E1Q6ZUB1 1445 aa17.13■□□□□ 0.33
LINC00963-201ENST00000412141 PPLO60437 1756 aa17.11■□□□□ 0.33
LINC00963-201ENST00000412141 ADGRL3Q9HAR2 1447 aa17.11■□□□□ 0.33
LINC00963-201ENST00000412141 ACIN1Q9UKV3 1341 aaKnown RBP17.1■□□□□ 0.33
LINC00963-201ENST00000412141 NUTM2BA6NNL0 878 aaPredicted RBP17.09■□□□□ 0.33
LINC00963-201ENST00000412141 NUTM2EB1AL46 878 aaPredicted RBP17.09■□□□□ 0.33
LINC00963-201ENST00000412141 NUTM2AQ8IVF1 878 aaPredicted RBP17.09■□□□□ 0.33
LINC00963-201ENST00000412141 ANKRD30BQ9BXX2 1392 aa17.09■□□□□ 0.33
LINC00963-201ENST00000412141 DCCP43146 1447 aa17.09■□□□□ 0.33
LINC00963-201ENST00000412141 MST1RQ04912 1400 aa17.09■□□□□ 0.33
LINC00963-201ENST00000412141 LRP6O75581 1613 aa17.08■□□□□ 0.32
LINC00963-201ENST00000412141 AHDC1Q5TGY3 1603 aaPredicted RBP17.08■□□□□ 0.32
LINC00963-201ENST00000412141 MEX3CQ5U5Q3 659 aaKnown RBP17.08■□□□□ 0.32
LINC00963-201ENST00000412141 WAPLQ7Z5K2 1190 aa17.08■□□□□ 0.32
LINC00963-201ENST00000412141 ORAI2Q96SN7 254 aa17.07■□□□□ 0.32
LINC00963-201ENST00000412141 SETD1AO15047 1707 aaKnown RBP17.07■□□□□ 0.32
LINC00963-201ENST00000412141 PTCH1Q13635 1447 aa17.06■□□□□ 0.32
LINC00963-201ENST00000412141 NUTM2FA1L443 756 aa17.06■□□□□ 0.32
LINC00963-201ENST00000412141 ASXL1Q8IXJ9 1541 aa17.06■□□□□ 0.32
LINC00963-201ENST00000412141 NALCNQ8IZF0 1738 aa17.05■□□□□ 0.32
LINC00963-201ENST00000412141 CFAP70Q5T0N1 1121 aa17.05■□□□□ 0.32
LINC00963-201ENST00000412141 KDM2AQ9Y2K7 1162 aa17.05■□□□□ 0.32
LINC00963-201ENST00000412141 SPATA31A6Q5VVP1 1343 aa17.03■□□□□ 0.32
LINC00963-201ENST00000412141 C1orf167Q5SNV9 1468 aa17.03■□□□□ 0.32
LINC00963-201ENST00000412141 SHPRHQ149N8 1683 aa17.03■□□□□ 0.32
LINC00963-201ENST00000412141 LRPPRCP42704 1394 aaKnown RBP17.02■□□□□ 0.31
LINC00963-201ENST00000412141 PLEKHH1Q9ULM0 1364 aa17.02■□□□□ 0.31
LINC00963-201ENST00000412141 SAFB2Q14151 953 aaKnown RBP eCLIP17.01■□□□□ 0.31
LINC00963-201ENST00000412141 ESCO1Q5FWF5 840 aa17.01■□□□□ 0.31
LINC00963-201ENST00000412141 LRRC59Q96AG4 307 aaKnown RBP17.01■□□□□ 0.31
Retrieved 100 of 20,778 RNA–protein pairs in 37.9 ms