RNA–Protein interactions for RNA: ENST00000409441.5

LIMS1-204, Transcript of LIM zinc finger domain containing 1, humanhuman

APPRIS ALT1 TSL 1 (best) BASIC

Gene LIMS1, Length 1,627 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMS1-204ENST00000409441 NUTM2DQ5VT03 806 aaPredicted RBP19.23■□□□□ 0.67
LIMS1-204ENST00000409441 DIEXFQ68CQ4 756 aaKnown RBP19.23■□□□□ 0.67
LIMS1-204ENST00000409441 DCAF11Q8TEB1 546 aa19.23■□□□□ 0.67
LIMS1-204ENST00000409441 UBR1Q8IWV7 1749 aa19.23■□□□□ 0.67
LIMS1-204ENST00000409441 LMTK3Q96Q04 1460 aa19.23■□□□□ 0.67
LIMS1-204ENST00000409441 TXNDC2Q86VQ3 553 aa19.22■□□□□ 0.67
LIMS1-204ENST00000409441 KDM2AQ9Y2K7 1162 aa19.22■□□□□ 0.67
LIMS1-204ENST00000409441 EID1Q9Y6B2 187 aa19.22■□□□□ 0.67
LIMS1-204ENST00000409441 TONSLQ96HA7 1378 aa19.21■□□□□ 0.67
LIMS1-204ENST00000409441 KDM5AP29375 1690 aaKnown RBP19.21■□□□□ 0.67
LIMS1-204ENST00000409441 ZNF142P52746 1687 aaPredicted RBP19.21■□□□□ 0.67
LIMS1-204ENST00000409441 LTKP29376 864 aa19.21■□□□□ 0.67
LIMS1-204ENST00000409441 ANKLE2Q86XL3 938 aa19.21■□□□□ 0.67
LIMS1-204ENST00000409441 ABCF1Q8NE71 845 aaKnown RBP eCLIP19.21■□□□□ 0.67
LIMS1-204ENST00000409441 NEURL4Q96JN8 1562 aa19.21■□□□□ 0.67
LIMS1-204ENST00000409441 TIMELESSQ9UNS1 1208 aa19.21■□□□□ 0.67
LIMS1-204ENST00000409441 RIMS2Q9UQ26 1411 aa19.2■□□□□ 0.66
LIMS1-204ENST00000409441 VGFO15240 615 aaPredicted RBP19.19■□□□□ 0.66
LIMS1-204ENST00000409441 MYO5BQ9ULV0 1848 aa19.18■□□□□ 0.66
LIMS1-204ENST00000409441 PPP1R15AO75807 674 aaPredicted RBP19.18■□□□□ 0.66
LIMS1-204ENST00000409441 STAC3Q96MF2 364 aa19.18■□□□□ 0.66
LIMS1-204ENST00000409441 ARHGAP23Q9P227 1491 aa19.17■□□□□ 0.66
LIMS1-204ENST00000409441 ZFYVE9O95405 1425 aa19.17■□□□□ 0.66
LIMS1-204ENST00000409441 SLIT1O75093 1534 aa19.17■□□□□ 0.66
LIMS1-204ENST00000409441 NCKAP5LQ9HCH0 1330 aa19.16■□□□□ 0.66
LIMS1-204ENST00000409441 ADGRF5Q8IZF2 1346 aa19.15■□□□□ 0.66
LIMS1-204ENST00000409441 NEXMIFQ5QGS0 1516 aa19.14■□□□□ 0.65
LIMS1-204ENST00000409441 BCANQ96GW7 911 aa19.13■□□□□ 0.65
LIMS1-204ENST00000409441 SCAF11Q99590 1463 aaKnown RBP19.11■□□□□ 0.65
LIMS1-204ENST00000409441 PPLO60437 1756 aa19.09■□□□□ 0.65
LIMS1-204ENST00000409441 PLEKHG1Q9ULL1 1385 aa19.08■□□□□ 0.65
LIMS1-204ENST00000409441 MYOM2P54296 1465 aa19.08■□□□□ 0.64
LIMS1-204ENST00000409441 NBPF8Q3BBV2 869 aa19.07■□□□□ 0.64
LIMS1-204ENST00000409441 IFT172Q9UG01 1749 aa19.06■□□□□ 0.64
LIMS1-204ENST00000409441 SLC26A8Q96RN1 970 aa19.06■□□□□ 0.64
LIMS1-204ENST00000409441 NPHP4O75161 1426 aaPredicted RBP19.05■□□□□ 0.64
LIMS1-204ENST00000409441 NRXN1Q9ULB1 1477 aa19.05■□□□□ 0.64
LIMS1-204ENST00000409441 CFAP70Q5T0N1 1121 aa19.05■□□□□ 0.64
LIMS1-204ENST00000409441 C14orf93Q9H972 538 aaKnown RBP19.05■□□□□ 0.64
LIMS1-204ENST00000409441 MED14O60244 1454 aa19.04■□□□□ 0.64
LIMS1-204ENST00000409441 PIK3C2GO75747 1445 aa19.04■□□□□ 0.64
LIMS1-204ENST00000409441 PRAG1Q86YV5 1406 aa19.04■□□□□ 0.64
LIMS1-204ENST00000409441 DMRT2Q9Y5R5 561 aa19.03■□□□□ 0.64
LIMS1-204ENST00000409441 TBX22Q9Y458 520 aa19.03■□□□□ 0.64
LIMS1-204ENST00000409441 STRCQ7RTU9 1775 aa19.01■□□□□ 0.63
LIMS1-204ENST00000409441 ADAMTS13Q76LX8 1427 aa19■□□□□ 0.63
LIMS1-204ENST00000409441 NBPF1Q3BBV0 1214 aa19■□□□□ 0.63
LIMS1-204ENST00000409441 TMEM132EQ6IEE7 984 aa19■□□□□ 0.63
LIMS1-204ENST00000409441 POLR1AO95602 1720 aaPredicted RBP18.99■□□□□ 0.63
LIMS1-204ENST00000409441 SETBP1Q9Y6X0 1596 aa18.99■□□□□ 0.63
LIMS1-204ENST00000409441 ALKQ9UM73 1620 aa18.97■□□□□ 0.63
LIMS1-204ENST00000409441 METP08581 1390 aa18.97■□□□□ 0.63
LIMS1-204ENST00000409441 IQGAP1P46940 1657 aa18.96■□□□□ 0.63
LIMS1-204ENST00000409441 NRXN3Q9Y4C0 1643 aa18.96■□□□□ 0.62
LIMS1-204ENST00000409441 ROCK2O75116 1388 aaKnown RBP18.93■□□□□ 0.62
LIMS1-204ENST00000409441 STK26Q9P289 416 aa18.92■□□□□ 0.62
LIMS1-204ENST00000409441 AMOTL2Q9Y2J4 779 aa18.92■□□□□ 0.62
LIMS1-204ENST00000409441 CARD11Q9BXL7 1154 aa18.91■□□□□ 0.62
LIMS1-204ENST00000409441 PIK3R4Q99570 1358 aa18.91■□□□□ 0.62
LIMS1-204ENST00000409441 DIP2AQ14689 1571 aa18.9■□□□□ 0.62
LIMS1-204ENST00000409441 KCNA6P17658 529 aa18.9■□□□□ 0.62
LIMS1-204ENST00000409441 RALGAPBQ86X10 1494 aa18.9■□□□□ 0.62
LIMS1-204ENST00000409441 KIAA1210Q9ULL0 1709 aa18.89■□□□□ 0.61
LIMS1-204ENST00000409441 TRPM1Q7Z4N2 1603 aa18.89■□□□□ 0.61
LIMS1-204ENST00000409441 TRAK1Q9UPV9 953 aa18.89■□□□□ 0.61
LIMS1-204ENST00000409441 LAMC1P11047 1609 aa18.88■□□□□ 0.61
LIMS1-204ENST00000409441 PTPRUQ92729 1446 aa18.88■□□□□ 0.61
LIMS1-204ENST00000409441 YTHDC2Q9H6S0 1430 aaKnown RBP18.88■□□□□ 0.61
LIMS1-204ENST00000409441 ADGRB1O14514 1584 aa18.88■□□□□ 0.61
LIMS1-204ENST00000409441 LRPPRCP42704 1394 aaKnown RBP18.87■□□□□ 0.61
LIMS1-204ENST00000409441 GPRASP1Q5JY77 1395 aa18.87■□□□□ 0.61
LIMS1-204ENST00000409441 ABCC11Q96J66 1382 aa18.87■□□□□ 0.61
LIMS1-204ENST00000409441 SETD1AO15047 1707 aaKnown RBP18.87■□□□□ 0.61
LIMS1-204ENST00000409441 ZNF335Q9H4Z2 1342 aaPredicted RBP18.86■□□□□ 0.61
LIMS1-204ENST00000409441 ASXL1Q8IXJ9 1541 aa18.86■□□□□ 0.61
LIMS1-204ENST00000409441 SIRT1Q96EB6 747 aa18.83■□□□□ 0.61
LIMS1-204ENST00000409441 CENPBP07199 599 aaPredicted RBP18.82■□□□□ 0.6
LIMS1-204ENST00000409441 WAPLQ7Z5K2 1190 aa18.82■□□□□ 0.6
LIMS1-204ENST00000409441 MIER1Q8N108 512 aa18.82■□□□□ 0.6
LIMS1-204ENST00000409441 PROSER2Q86WR7 435 aaPredicted RBP18.82■□□□□ 0.6
LIMS1-204ENST00000409441 CHD2O14647 1828 aaKnown RBP18.81■□□□□ 0.6
LIMS1-204ENST00000409441 PRAM1Q96QH2 718 aa18.81■□□□□ 0.6
LIMS1-204ENST00000409441 ROBO2Q9HCK4 1378 aa18.81■□□□□ 0.6
LIMS1-204ENST00000409441 POGKQ9P215 609 aa18.81■□□□□ 0.6
LIMS1-204ENST00000409441 TECPR2O15040 1411 aa18.79■□□□□ 0.6
LIMS1-204ENST00000409441 RBM33Q96EV2 1170 aaKnown RBP18.79■□□□□ 0.6
LIMS1-204ENST00000409441 EIF4G2P78344 907 aaKnown RBP eCLIP18.78■□□□□ 0.6
LIMS1-204ENST00000409441 USP47Q96K76 1375 aa18.78■□□□□ 0.6
LIMS1-204ENST00000409441 SAFB2Q14151 953 aaKnown RBP eCLIP18.78■□□□□ 0.6
LIMS1-204ENST00000409441 ST20-MTHFSA0A0A6YYL1 179 aa18.77■□□□□ 0.6
LIMS1-204ENST00000409441 FAM135BQ49AJ0 1406 aa18.77■□□□□ 0.59
LIMS1-204ENST00000409441 EIF3AQ14152 1382 aaKnown RBP18.76■□□□□ 0.59
LIMS1-204ENST00000409441 PLEKHH1Q9ULM0 1364 aa18.76■□□□□ 0.59
LIMS1-204ENST00000409441 XRN1Q8IZH2 1706 aaKnown RBP18.76■□□□□ 0.59
LIMS1-204ENST00000409441 NWD1Q149M9 1564 aa18.76■□□□□ 0.59
LIMS1-204ENST00000409441 DLC1Q96QB1 1528 aa18.75■□□□□ 0.59
LIMS1-204ENST00000409441 CENPJQ9HC77 1338 aaPredicted RBP18.75■□□□□ 0.59
LIMS1-204ENST00000409441 HSPA5P11021 654 aaKnown RBP18.75■□□□□ 0.59
LIMS1-204ENST00000409441 PTCH1Q13635 1447 aa18.75■□□□□ 0.59
LIMS1-204ENST00000409441 STRCP1A6NGW2 1772 aa18.74■□□□□ 0.59
Retrieved 100 of 20,778 RNA–protein pairs in 23.3 ms