RNA–Protein interactions for RNA: ENST00000404008.6

USP42-202, Transcript of ubiquitin specific peptidase 42, humanhuman

TSL 2

Gene USP42, Length 1,380 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP42-202ENST00000404008 ANKLE2Q86XL3 938 aa42.76■■■■■ 4.44
USP42-202ENST00000404008 NCKAP5LQ9HCH0 1330 aa42.73■■■■■ 4.43
USP42-202ENST00000404008 LTKP29376 864 aa42.73■■■■■ 4.43
USP42-202ENST00000404008 SIN3AQ96ST3 1273 aa42.72■■■■■ 4.43
USP42-202ENST00000404008 EID1Q9Y6B2 187 aa42.72■■■■■ 4.43
USP42-202ENST00000404008 RGL3Q3MIN7 710 aa42.71■■■■■ 4.43
USP42-202ENST00000404008 TXNDC2Q86VQ3 553 aa42.71■■■■■ 4.43
USP42-202ENST00000404008 MED14O60244 1454 aa42.69■■■■■ 4.42
USP42-202ENST00000404008 RPGRIP1LQ68CZ1 1315 aa42.69■■■■■ 4.42
USP42-202ENST00000404008 HDGFP51858 240 aaKnown RBP42.66■■■■■ 4.42
USP42-202ENST00000404008 ABCF1Q8NE71 845 aaKnown RBP eCLIP42.66■■■■■ 4.42
USP42-202ENST00000404008 CLSPNQ9HAW4 1339 aa42.66■■■■■ 4.42
USP42-202ENST00000404008 CCER1Q8TC90 406 aaPredicted RBP42.65■■■■■ 4.42
USP42-202ENST00000404008 IQGAP1P46940 1657 aa42.65■■■■■ 4.42
USP42-202ENST00000404008 NEUROD1Q13562 356 aa42.62■■■■■ 4.41
USP42-202ENST00000404008 NUTM2DQ5VT03 806 aaPredicted RBP42.62■■■■■ 4.41
USP42-202ENST00000404008 NPHP4O75161 1426 aaPredicted RBP42.6■■■■■ 4.41
USP42-202ENST00000404008 PPP1R15AO75807 674 aaPredicted RBP42.6■■■■■ 4.41
USP42-202ENST00000404008 PLEKHG1Q9ULL1 1385 aa42.57■■■■■ 4.41
USP42-202ENST00000404008 VGFO15240 615 aaPredicted RBP42.53■■■■■ 4.4
USP42-202ENST00000404008 DMRT2Q9Y5R5 561 aa42.53■■■■■ 4.4
USP42-202ENST00000404008 MYOM2P54296 1465 aa42.53■■■■■ 4.4
USP42-202ENST00000404008 NRXN3Q9Y4C0 1643 aa42.51■■■■■ 4.4
USP42-202ENST00000404008 SETBP1Q9Y6X0 1596 aa42.51■■■■■ 4.4
USP42-202ENST00000404008 DCAF11Q8TEB1 546 aa42.47■■■■■ 4.39
USP42-202ENST00000404008 NRXN1Q9ULB1 1477 aa42.45■■■■■ 4.39
USP42-202ENST00000404008 ADGRF5Q8IZF2 1346 aa42.45■■■■■ 4.39
USP42-202ENST00000404008 SENP3Q9H4L4 574 aaPredicted RBP42.43■■■■■ 4.38
USP42-202ENST00000404008 L3MBTL2Q969R5 705 aa42.42■■■■■ 4.38
USP42-202ENST00000404008 DIP2AQ14689 1571 aa42.42■■■■■ 4.38
USP42-202ENST00000404008 BCANQ96GW7 911 aa42.41■■■■■ 4.38
USP42-202ENST00000404008 ADAMTS13Q76LX8 1427 aa42.41■■■■■ 4.38
USP42-202ENST00000404008 STAC3Q96MF2 364 aa42.4■■■■■ 4.38
USP42-202ENST00000404008 TONSLQ96HA7 1378 aa42.4■■■■■ 4.38
USP42-202ENST00000404008 PIK3C2GO75747 1445 aa42.4■■■■■ 4.38
USP42-202ENST00000404008 KDM2AQ9Y2K7 1162 aa42.39■■■■■ 4.38
USP42-202ENST00000404008 SETD1AO15047 1707 aaKnown RBP42.38■■■■■ 4.37
USP42-202ENST00000404008 SLC26A8Q96RN1 970 aa42.36■■■■■ 4.37
USP42-202ENST00000404008 ALKQ9UM73 1620 aa42.34■■■■■ 4.37
USP42-202ENST00000404008 LAMC1P11047 1609 aa42.31■■■■■ 4.36
USP42-202ENST00000404008 TBX22Q9Y458 520 aa42.3■■■■■ 4.36
USP42-202ENST00000404008 PRAG1Q86YV5 1406 aa42.26■■■■■ 4.36
USP42-202ENST00000404008 CHD2O14647 1828 aaKnown RBP42.24■■■■■ 4.35
USP42-202ENST00000404008 TIMELESSQ9UNS1 1208 aa42.23■■■■■ 4.35
USP42-202ENST00000404008 STRCP1A6NGW2 1772 aa42.22■■■■■ 4.35
USP42-202ENST00000404008 KIAA1210Q9ULL0 1709 aa42.21■■■■■ 4.35
USP42-202ENST00000404008 PIK3R4Q99570 1358 aa42.2■■■■■ 4.35
USP42-202ENST00000404008 METP08581 1390 aa42.19■■■■■ 4.34
USP42-202ENST00000404008 C14orf93Q9H972 538 aaKnown RBP42.19■■■■■ 4.34
USP42-202ENST00000404008 NWD1Q149M9 1564 aa42.19■■■■■ 4.34
USP42-202ENST00000404008 ZNF335Q9H4Z2 1342 aaPredicted RBP42.18■■■■■ 4.34
USP42-202ENST00000404008 ASXL1Q8IXJ9 1541 aa42.17■■■■■ 4.34
USP42-202ENST00000404008 CFAP70Q5T0N1 1121 aa42.16■■■■■ 4.34
USP42-202ENST00000404008 TRPM1Q7Z4N2 1603 aa42.13■■■■■ 4.34
USP42-202ENST00000404008 XRN1Q8IZH2 1706 aaKnown RBP42.12■■■■■ 4.33
USP42-202ENST00000404008 PTPRUQ92729 1446 aa42.12■■■■■ 4.33
USP42-202ENST00000404008 LTBP4Q8N2S1 1624 aa42.11■■■■■ 4.33
USP42-202ENST00000404008 ADGRB1O14514 1584 aa42.09■■■■■ 4.33
USP42-202ENST00000404008 KCNA6P17658 529 aa42.08■■■■■ 4.33
USP42-202ENST00000404008 NBPF8Q3BBV2 869 aa42.06■■■■■ 4.32
USP42-202ENST00000404008 CPS1P31327 1500 aa42.05■■■■■ 4.32
USP42-202ENST00000404008 TMEM132EQ6IEE7 984 aa42.04■■■■■ 4.32
USP42-202ENST00000404008 NKTRP30414 1462 aaKnown RBP42.04■■■■■ 4.32
USP42-202ENST00000404008 KNDC1Q76NI1 1749 aa42.02■■■■■ 4.32
USP42-202ENST00000404008 AMOTL2Q9Y2J4 779 aa42.01■■■■■ 4.32
USP42-202ENST00000404008 YTHDC2Q9H6S0 1430 aaKnown RBP42■■■■■ 4.31
USP42-202ENST00000404008 LRPPRCP42704 1394 aaKnown RBP41.98■■■■■ 4.31
USP42-202ENST00000404008 RALGAPBQ86X10 1494 aa41.96■■■■■ 4.31
USP42-202ENST00000404008 NBPF1Q3BBV0 1214 aa41.95■■■■■ 4.31
USP42-202ENST00000404008 TECPR2O15040 1411 aa41.94■■■■■ 4.3
USP42-202ENST00000404008 LRRC7Q96NW7 1537 aa41.93■■■■■ 4.3
USP42-202ENST00000404008 PTCH1Q13635 1447 aa41.92■■■■■ 4.3
USP42-202ENST00000404008 XIRP1Q702N8 1843 aaKnown RBP41.92■■■■■ 4.3
USP42-202ENST00000404008 ABCC11Q96J66 1382 aa41.92■■■■■ 4.3
USP42-202ENST00000404008 STK26Q9P289 416 aa41.9■■■■■ 4.3
USP42-202ENST00000404008 ROCK2O75116 1388 aaKnown RBP41.89■■■■■ 4.3
USP42-202ENST00000404008 ROBO2Q9HCK4 1378 aa41.87■■■■■ 4.29
USP42-202ENST00000404008 GPRASP1Q5JY77 1395 aa41.86■■■■■ 4.29
USP42-202ENST00000404008 DLC1Q96QB1 1528 aa41.86■■■■■ 4.29
USP42-202ENST00000404008 ARHGEF28Q8N1W1 1705 aaKnown RBP41.85■■■■■ 4.29
USP42-202ENST00000404008 PROSER2Q86WR7 435 aaPredicted RBP41.85■■■■■ 4.29
USP42-202ENST00000404008 TMEM94Q12767 1356 aa41.81■■■■■ 4.28
USP42-202ENST00000404008 TRAK1Q9UPV9 953 aa41.79■■■■■ 4.28
USP42-202ENST00000404008 FAM135BQ49AJ0 1406 aa41.79■■■■■ 4.28
USP42-202ENST00000404008 SIRT1Q96EB6 747 aa41.77■■■■■ 4.28
USP42-202ENST00000404008 RBM33Q96EV2 1170 aaKnown RBP41.77■■■■■ 4.28
USP42-202ENST00000404008 NCOA3Q9Y6Q9 1424 aa41.76■■■■■ 4.28
USP42-202ENST00000404008 IQSEC2Q5JU85 1478 aa41.74■■■■■ 4.27
USP42-202ENST00000404008 NALCNQ8IZF0 1738 aa41.74■■■■■ 4.27
USP42-202ENST00000404008 CERKQ8TCT0 537 aa41.74■■■■■ 4.27
USP42-202ENST00000404008 CARD11Q9BXL7 1154 aa41.73■■■■■ 4.27
USP42-202ENST00000404008 PLEKHH1Q9ULM0 1364 aa41.71■■■■■ 4.27
USP42-202ENST00000404008 WAPLQ7Z5K2 1190 aa41.71■■■■■ 4.27
USP42-202ENST00000404008 SIPA1L2Q9P2F8 1722 aaPredicted RBP41.69■■■■■ 4.26
USP42-202ENST00000404008 PRAM1Q96QH2 718 aa41.69■■■■■ 4.26
USP42-202ENST00000404008 ADGRL3Q9HAR2 1447 aa41.65■■■■■ 4.26
USP42-202ENST00000404008 POGKQ9P215 609 aa41.63■■■■■ 4.26
USP42-202ENST00000404008 C14orf37Q86TY3 774 aa41.62■■■■■ 4.25
USP42-202ENST00000404008 QRICH2Q9H0J4 1663 aa41.62■■■■■ 4.25
USP42-202ENST00000404008 EIF3AQ14152 1382 aaKnown RBP41.61■■■■■ 4.25
Retrieved 100 of 20,778 RNA–protein pairs in 48.8 ms