RNA–Protein interactions for RNA: ENST00000403076.5

SDC1-203, Transcript of syndecan 1, humanhuman

TSL 1 (best) BASIC

Gene SDC1, Length 1,523 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SDC1-203ENST00000403076 VGFO15240 615 aaPredicted RBP25.83■■□□□ 1.73
SDC1-203ENST00000403076 KDM5AP29375 1690 aaKnown RBP25.83■■□□□ 1.73
SDC1-203ENST00000403076 RIMS2Q9UQ26 1411 aa25.82■■□□□ 1.72
SDC1-203ENST00000403076 ABCF1Q8NE71 845 aaKnown RBP eCLIP25.82■■□□□ 1.72
SDC1-203ENST00000403076 TMEM2Q9UHN6 1383 aa25.81■■□□□ 1.72
SDC1-203ENST00000403076 ZNF142P52746 1687 aaPredicted RBP25.79■■□□□ 1.72
SDC1-203ENST00000403076 NEXMIFQ5QGS0 1516 aa25.79■■□□□ 1.72
SDC1-203ENST00000403076 ADGRF5Q8IZF2 1346 aa25.78■■□□□ 1.72
SDC1-203ENST00000403076 NBPF8Q3BBV2 869 aa25.78■■□□□ 1.72
SDC1-203ENST00000403076 EID1Q9Y6B2 187 aa25.78■■□□□ 1.72
SDC1-203ENST00000403076 PPLO60437 1756 aa25.78■■□□□ 1.72
SDC1-203ENST00000403076 MYOM2P54296 1465 aa25.76■■□□□ 1.71
SDC1-203ENST00000403076 IFT172Q9UG01 1749 aa25.76■■□□□ 1.71
SDC1-203ENST00000403076 TXNDC2Q86VQ3 553 aa25.76■■□□□ 1.71
SDC1-203ENST00000403076 SENP3Q9H4L4 574 aaPredicted RBP25.75■■□□□ 1.71
SDC1-203ENST00000403076 ZFYVE9O95405 1425 aa25.75■■□□□ 1.71
SDC1-203ENST00000403076 PRAG1Q86YV5 1406 aa25.75■■□□□ 1.71
SDC1-203ENST00000403076 BCANQ96GW7 911 aa25.73■■□□□ 1.71
SDC1-203ENST00000403076 LTKP29376 864 aa25.72■■□□□ 1.71
SDC1-203ENST00000403076 ANKLE2Q86XL3 938 aa25.72■■□□□ 1.71
SDC1-203ENST00000403076 SLIT1O75093 1534 aa25.72■■□□□ 1.71
SDC1-203ENST00000403076 ARHGAP23Q9P227 1491 aa25.71■■□□□ 1.71
SDC1-203ENST00000403076 NRXN1Q9ULB1 1477 aa25.68■■□□□ 1.7
SDC1-203ENST00000403076 AEBP2Q6ZN18 517 aaPredicted RBP25.68■■□□□ 1.7
SDC1-203ENST00000403076 HSPA2P54652 639 aa25.67■■□□□ 1.7
SDC1-203ENST00000403076 CFAP70Q5T0N1 1121 aa25.67■■□□□ 1.7
SDC1-203ENST00000403076 PIK3C2GO75747 1445 aa25.66■■□□□ 1.7
SDC1-203ENST00000403076 SCAF11Q99590 1463 aaKnown RBP25.66■■□□□ 1.7
SDC1-203ENST00000403076 LMTK3Q96Q04 1460 aa25.64■■□□□ 1.7
SDC1-203ENST00000403076 ROCK2O75116 1388 aaKnown RBP25.64■■□□□ 1.69
SDC1-203ENST00000403076 C14orf93Q9H972 538 aaKnown RBP25.63■■□□□ 1.69
SDC1-203ENST00000403076 PLEKHG1Q9ULL1 1385 aa25.63■■□□□ 1.69
SDC1-203ENST00000403076 NBPF1Q3BBV0 1214 aa25.63■■□□□ 1.69
SDC1-203ENST00000403076 RALGAPBQ86X10 1494 aa25.62■■□□□ 1.69
SDC1-203ENST00000403076 CARD11Q9BXL7 1154 aa25.61■■□□□ 1.69
SDC1-203ENST00000403076 TRPM1Q7Z4N2 1603 aa25.6■■□□□ 1.69
SDC1-203ENST00000403076 NCKAP5LQ9HCH0 1330 aa25.6■■□□□ 1.69
SDC1-203ENST00000403076 KIAA1210Q9ULL0 1709 aa25.56■■□□□ 1.68
SDC1-203ENST00000403076 TMEM132EQ6IEE7 984 aa25.56■■□□□ 1.68
SDC1-203ENST00000403076 ALKQ9UM73 1620 aa25.55■■□□□ 1.68
SDC1-203ENST00000403076 SLC26A8Q96RN1 970 aa25.55■■□□□ 1.68
SDC1-203ENST00000403076 SETBP1Q9Y6X0 1596 aa25.55■■□□□ 1.68
SDC1-203ENST00000403076 LAMC1P11047 1609 aa25.54■■□□□ 1.68
SDC1-203ENST00000403076 NPHP4O75161 1426 aaPredicted RBP25.53■■□□□ 1.68
SDC1-203ENST00000403076 GPRASP1Q5JY77 1395 aa25.52■■□□□ 1.68
SDC1-203ENST00000403076 IQGAP1P46940 1657 aa25.52■■□□□ 1.68
SDC1-203ENST00000403076 POLR1AO95602 1720 aaPredicted RBP25.52■■□□□ 1.68
SDC1-203ENST00000403076 ADAMTS13Q76LX8 1427 aa25.51■■□□□ 1.67
SDC1-203ENST00000403076 TBX22Q9Y458 520 aa25.51■■□□□ 1.67
SDC1-203ENST00000403076 NRXN3Q9Y4C0 1643 aa25.5■■□□□ 1.67
SDC1-203ENST00000403076 EIF4G2P78344 907 aaKnown RBP eCLIP25.5■■□□□ 1.67
SDC1-203ENST00000403076 MED14O60244 1454 aa25.49■■□□□ 1.67
SDC1-203ENST00000403076 STK26Q9P289 416 aa25.48■■□□□ 1.67
SDC1-203ENST00000403076 METP08581 1390 aa25.47■■□□□ 1.67
SDC1-203ENST00000403076 USP47Q96K76 1375 aa25.46■■□□□ 1.67
SDC1-203ENST00000403076 TRAK1Q9UPV9 953 aa25.46■■□□□ 1.67
SDC1-203ENST00000403076 ADGRB1O14514 1584 aa25.46■■□□□ 1.67
SDC1-203ENST00000403076 HSPA5P11021 654 aaKnown RBP25.45■■□□□ 1.66
SDC1-203ENST00000403076 DIP2AQ14689 1571 aa25.44■■□□□ 1.66
SDC1-203ENST00000403076 YTHDC2Q9H6S0 1430 aaKnown RBP25.43■■□□□ 1.66
SDC1-203ENST00000403076 ASXL1Q8IXJ9 1541 aa25.43■■□□□ 1.66
SDC1-203ENST00000403076 HIRIP3Q9BW71 556 aaPredicted RBP25.42■■□□□ 1.66
SDC1-203ENST00000403076 SETD1AO15047 1707 aaKnown RBP25.42■■□□□ 1.66
SDC1-203ENST00000403076 LRPPRCP42704 1394 aaKnown RBP25.41■■□□□ 1.66
SDC1-203ENST00000403076 EIF3AQ14152 1382 aaKnown RBP25.41■■□□□ 1.66
SDC1-203ENST00000403076 STRCQ7RTU9 1775 aa25.39■■□□□ 1.65
SDC1-203ENST00000403076 ST20-MTHFSA0A0A6YYL1 179 aa25.38■■□□□ 1.65
SDC1-203ENST00000403076 AMOTL2Q9Y2J4 779 aa25.38■■□□□ 1.65
SDC1-203ENST00000403076 DMRT2Q9Y5R5 561 aa25.37■■□□□ 1.65
SDC1-203ENST00000403076 PIK3R4Q99570 1358 aa25.37■■□□□ 1.65
SDC1-203ENST00000403076 ABCC11Q96J66 1382 aa25.37■■□□□ 1.65
SDC1-203ENST00000403076 POGKQ9P215 609 aa25.36■■□□□ 1.65
SDC1-203ENST00000403076 PTPRUQ92729 1446 aa25.34■■□□□ 1.65
SDC1-203ENST00000403076 CENPJQ9HC77 1338 aaPredicted RBP25.33■■□□□ 1.64
SDC1-203ENST00000403076 PRAM1Q96QH2 718 aa25.32■■□□□ 1.64
SDC1-203ENST00000403076 ZNF316A6NFI3 1004 aaPredicted RBP25.32■■□□□ 1.64
SDC1-203ENST00000403076 SAFB2Q14151 953 aaKnown RBP eCLIP25.32■■□□□ 1.64
SDC1-203ENST00000403076 KCNA6P17658 529 aa25.3■■□□□ 1.64
SDC1-203ENST00000403076 WAPLQ7Z5K2 1190 aa25.29■■□□□ 1.64
SDC1-203ENST00000403076 SIRT1Q96EB6 747 aa25.29■■□□□ 1.64
SDC1-203ENST00000403076 TECPR2O15040 1411 aa25.28■■□□□ 1.64
SDC1-203ENST00000403076 DLC1Q96QB1 1528 aa25.28■■□□□ 1.64
SDC1-203ENST00000403076 ARHGEF28Q8N1W1 1705 aaKnown RBP25.27■■□□□ 1.64
SDC1-203ENST00000403076 CHD2O14647 1828 aaKnown RBP25.27■■□□□ 1.64
SDC1-203ENST00000403076 ROBO2Q9HCK4 1378 aa25.27■■□□□ 1.64
SDC1-203ENST00000403076 KNDC1Q76NI1 1749 aa25.26■■□□□ 1.63
SDC1-203ENST00000403076 TESK2Q96S53 571 aa25.25■■□□□ 1.63
SDC1-203ENST00000403076 CPS1P31327 1500 aa25.25■■□□□ 1.63
SDC1-203ENST00000403076 FAM135BQ49AJ0 1406 aa25.25■■□□□ 1.63
SDC1-203ENST00000403076 SLC24A1O60721 1099 aa25.24■■□□□ 1.63
SDC1-203ENST00000403076 XRN1Q8IZH2 1706 aaKnown RBP25.24■■□□□ 1.63
SDC1-203ENST00000403076 PLEKHH1Q9ULM0 1364 aa25.23■■□□□ 1.63
SDC1-203ENST00000403076 PTCH1Q13635 1447 aa25.22■■□□□ 1.63
SDC1-203ENST00000403076 TMF1P82094 1093 aa25.22■■□□□ 1.63
SDC1-203ENST00000403076 MINK1Q8N4C8 1332 aaPredicted RBP25.22■■□□□ 1.63
SDC1-203ENST00000403076 PROSER2Q86WR7 435 aaPredicted RBP25.22■■□□□ 1.63
SDC1-203ENST00000403076 QRICH2Q9H0J4 1663 aa25.2■■□□□ 1.62
SDC1-203ENST00000403076 POLR3GLQ9BT43 218 aa25.19■■□□□ 1.62
SDC1-203ENST00000403076 NWD1Q149M9 1564 aa25.18■■□□□ 1.62
SDC1-203ENST00000403076 ZNF335Q9H4Z2 1342 aaPredicted RBP25.18■■□□□ 1.62
Retrieved 100 of 20,778 RNA–protein pairs in 9.6 ms