RNA–Protein interactions for RNA: ENST00000400337.6

COL18A1-204, Transcript of collagen type XVIII alpha 1 chain, humanhuman

TSL 1 (best) BASIC

Gene COL18A1, Length 5,436 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL18A1-204ENST00000400337 CABP2Q9NPB3 220 aa22.48■■□□□ 1.19
COL18A1-204ENST00000400337 EVA1CP58658 441 aa22.47■■□□□ 1.19
COL18A1-204ENST00000400337 MIA2Q96PC5 1412 aa22.47■■□□□ 1.19
COL18A1-204ENST00000400337 PSME1Q06323 249 aa22.47■■□□□ 1.19
COL18A1-204ENST00000400337 TTC5Q8N0Z6 440 aa22.46■■□□□ 1.19
COL18A1-204ENST00000400337 HMOX1P09601 288 aa22.46■■□□□ 1.19
COL18A1-204ENST00000400337 SYNJ1O43426 1573 aa22.46■■□□□ 1.19
COL18A1-204ENST00000400337 API5Q9BZZ5 524 aaKnown RBP22.46■■□□□ 1.19
COL18A1-204ENST00000400337 ERICH3Q5RHP9 1530 aa22.45■■□□□ 1.18
COL18A1-204ENST00000400337 C9orf78Q9NZ63 289 aaPredicted RBP22.45■■□□□ 1.18
COL18A1-204ENST00000400337 CFTRP13569 1480 aa22.45■■□□□ 1.18
COL18A1-204ENST00000400337 NEXNQ0ZGT2 675 aa22.45■■□□□ 1.18
COL18A1-204ENST00000400337 ARHGAP5Q13017 1502 aa22.43■■□□□ 1.18
COL18A1-204ENST00000400337 CFAP70Q5T0N1 1121 aa22.43■■□□□ 1.18
COL18A1-204ENST00000400337 TPM4P67936 248 aa22.43■■□□□ 1.18
COL18A1-204ENST00000400337 CCDC34Q96HJ3 373 aa22.42■■□□□ 1.18
COL18A1-204ENST00000400337 G3V3G9 751 aa22.42■■□□□ 1.18
COL18A1-204ENST00000400337 DCAF8Q5TAQ9 597 aa22.42■■□□□ 1.18
COL18A1-204ENST00000400337 FKBP5Q13451 457 aaPredicted RBP22.41■■□□□ 1.18
COL18A1-204ENST00000400337 RRBP1Q9P2E9 1410 aaKnown RBP22.41■■□□□ 1.18
COL18A1-204ENST00000400337 KIF3AQ9Y496 699 aa22.41■■□□□ 1.18
COL18A1-204ENST00000400337 ADAMTS8Q9UP79 889 aa22.41■■□□□ 1.18
COL18A1-204ENST00000400337 DIAPH3Q9NSV4 1193 aa22.4■■□□□ 1.18
COL18A1-204ENST00000400337 DDX11L8A8MPP1 907 aa22.4■■□□□ 1.18
COL18A1-204ENST00000400337 RASSF8Q8NHQ8 419 aa22.4■■□□□ 1.18
COL18A1-204ENST00000400337 GNAI1P63096 354 aa22.4■■□□□ 1.18
COL18A1-204ENST00000400337 NESP48681 1621 aa22.39■■□□□ 1.17
COL18A1-204ENST00000400337 PRG4Q92954 1404 aaPredicted RBP22.39■■□□□ 1.17
COL18A1-204ENST00000400337 FOXD4L6Q3SYB3 417 aaPredicted RBP22.39■■□□□ 1.17
COL18A1-204ENST00000400337 FOXD4L3Q6VB84 417 aaPredicted RBP22.39■■□□□ 1.17
COL18A1-204ENST00000400337 SF3A1Q15459 793 aaKnown RBP22.38■■□□□ 1.17
COL18A1-204ENST00000400337 SYNJ2O15056 1496 aa22.38■■□□□ 1.17
COL18A1-204ENST00000400337 TSPYL4Q9UJ04 414 aa22.38■■□□□ 1.17
COL18A1-204ENST00000400337 MTHFSP49914 203 aa22.37■■□□□ 1.17
COL18A1-204ENST00000400337 NBPF1Q3BBV0 1214 aa22.36■■□□□ 1.17
COL18A1-204ENST00000400337 H3BQV1 296 aa22.36■■□□□ 1.17
COL18A1-204ENST00000400337 PHF14O94880 888 aa22.36■■□□□ 1.17
COL18A1-204ENST00000400337 IFFO2Q5TF58 517 aa22.36■■□□□ 1.17
COL18A1-204ENST00000400337 BRD4O60885 1362 aaPredicted RBP22.36■■□□□ 1.17
COL18A1-204ENST00000400337 DDX49Q9Y6V7 483 aaKnown RBP22.36■■□□□ 1.17
COL18A1-204ENST00000400337 REC8O95072 547 aa22.36■■□□□ 1.17
COL18A1-204ENST00000400337 PANK1Q8TE04 598 aa22.36■■□□□ 1.17
COL18A1-204ENST00000400337 USP35Q9P2H5 1018 aa22.36■■□□□ 1.17
COL18A1-204ENST00000400337 NUTM2GQ5VZR2 741 aa22.35■■□□□ 1.17
COL18A1-204ENST00000400337 FAM184AQ8NB25 1140 aa22.34■■□□□ 1.17
COL18A1-204ENST00000400337 IFIT2P09913 472 aaKnown RBP22.34■■□□□ 1.17
COL18A1-204ENST00000400337 DDX58O95786 925 aaKnown RBP22.33■■□□□ 1.17
COL18A1-204ENST00000400337 ROCK1Q13464 1354 aa22.33■■□□□ 1.17
COL18A1-204ENST00000400337 RUFY2Q8WXA3 655 aa22.33■■□□□ 1.16
COL18A1-204ENST00000400337 LNPKQ9C0E8 428 aa22.33■■□□□ 1.16
COL18A1-204ENST00000400337 PRXQ9BXM0 1461 aa22.33■■□□□ 1.16
COL18A1-204ENST00000400337 CREBRFQ8IUR6 639 aa22.32■■□□□ 1.16
COL18A1-204ENST00000400337 CDCA7LQ96GN5 454 aa22.32■■□□□ 1.16
COL18A1-204ENST00000400337 ARID3AQ99856 593 aa22.31■■□□□ 1.16
COL18A1-204ENST00000400337 TCP11L2Q8N4U5 519 aa22.31■■□□□ 1.16
COL18A1-204ENST00000400337 SYTL4Q96C24 671 aaPredicted RBP22.31■■□□□ 1.16
COL18A1-204ENST00000400337 PPP2R1AP30153 589 aa22.31■■□□□ 1.16
COL18A1-204ENST00000400337 AMER1Q5JTC6 1135 aaPredicted RBP22.31■■□□□ 1.16
COL18A1-204ENST00000400337 NBPF8Q3BBV2 869 aa22.3■■□□□ 1.16
COL18A1-204ENST00000400337 ATP6V1DQ9Y5K8 247 aa22.3■■□□□ 1.16
COL18A1-204ENST00000400337 NLRP6P59044 892 aa22.3■■□□□ 1.16
COL18A1-204ENST00000400337 ZKSCAN1P17029 563 aaPredicted RBP22.3■■□□□ 1.16
COL18A1-204ENST00000400337 C9orf84Q5VXU9 1444 aa22.29■■□□□ 1.16
COL18A1-204ENST00000400337 RAPGEF4Q8WZA2 1011 aa22.29■■□□□ 1.16
COL18A1-204ENST00000400337 G3BP1Q13283 466 aaKnown RBP eCLIP22.28■■□□□ 1.16
COL18A1-204ENST00000400337 ANO2Q9NQ90 1003 aa22.28■■□□□ 1.16
COL18A1-204ENST00000400337 EFCAB5A4FU69 1503 aa22.28■■□□□ 1.16
COL18A1-204ENST00000400337 FANCIQ9NVI1 1328 aa22.27■■□□□ 1.16
COL18A1-204ENST00000400337 LRRFIP1Q32MZ4 808 aaKnown RBP22.27■■□□□ 1.16
COL18A1-204ENST00000400337 HFM1A2PYH4 1435 aa22.27■■□□□ 1.16
COL18A1-204ENST00000400337 TOPBP1Q92547 1522 aa22.26■■□□□ 1.15
COL18A1-204ENST00000400337 KIAA1107Q9UPP5 1409 aa22.26■■□□□ 1.15
COL18A1-204ENST00000400337 MRC2Q9UBG0 1479 aa22.26■■□□□ 1.15
COL18A1-204ENST00000400337 EHBP1L1Q8N3D4 1523 aa22.26■■□□□ 1.15
COL18A1-204ENST00000400337 SKOR2Q2VWA4 1001 aaPredicted RBP22.25■■□□□ 1.15
COL18A1-204ENST00000400337 MCTP1Q6DN14 999 aa22.25■■□□□ 1.15
COL18A1-204ENST00000400337 PRAM1Q96QH2 718 aa22.25■■□□□ 1.15
COL18A1-204ENST00000400337 ATF3P18847 181 aa22.25■■□□□ 1.15
COL18A1-204ENST00000400337 CHMP4CQ96CF2 233 aa22.25■■□□□ 1.15
COL18A1-204ENST00000400337 NLRP2Q9NX02 1062 aa22.25■■□□□ 1.15
COL18A1-204ENST00000400337 GSE1Q14687 1217 aa22.25■■□□□ 1.15
COL18A1-204ENST00000400337 POLA1P09884 1462 aaPredicted RBP22.25■■□□□ 1.15
COL18A1-204ENST00000400337 MARCH6O60337 910 aa22.24■■□□□ 1.15
COL18A1-204ENST00000400337 NCBP3Q53F19 620 aaKnown RBP22.24■■□□□ 1.15
COL18A1-204ENST00000400337 TOP2BQ02880 1626 aa22.24■■□□□ 1.15
COL18A1-204ENST00000400337 ZBTB4Q9P1Z0 1013 aaPredicted RBP22.24■■□□□ 1.15
COL18A1-204ENST00000400337 AKAP17AQ02040 695 aaKnown RBP22.24■■□□□ 1.15
COL18A1-204ENST00000400337 IFT140Q96RY7 1462 aa22.23■■□□□ 1.15
COL18A1-204ENST00000400337 SLC12A5Q9H2X9 1139 aa22.23■■□□□ 1.15
COL18A1-204ENST00000400337 TROQ12816 1431 aaPredicted RBP22.23■■□□□ 1.15
COL18A1-204ENST00000400337 AIMP1Q12904 312 aaKnown RBP22.23■■□□□ 1.15
COL18A1-204ENST00000400337 INTS3Q68E01 1043 aaKnown RBP22.23■■□□□ 1.15
COL18A1-204ENST00000400337 SYNE3Q6ZMZ3 975 aa22.22■■□□□ 1.15
COL18A1-204ENST00000400337 PRKAR2BP31323 418 aa22.22■■□□□ 1.15
COL18A1-204ENST00000400337 APPP05067 770 aa22.22■■□□□ 1.15
COL18A1-204ENST00000400337 SCAPERQ9BY12 1400 aa22.22■■□□□ 1.15
COL18A1-204ENST00000400337 AAMPQ13685 434 aa22.21■■□□□ 1.15
COL18A1-204ENST00000400337 TXNDC2Q86VQ3 553 aa22.21■■□□□ 1.15
COL18A1-204ENST00000400337 VPS53Q5VIR6 699 aa22.21■■□□□ 1.15
COL18A1-204ENST00000400337 HSP90AB4PQ58FF6 505 aa22.21■■□□□ 1.15
Retrieved 100 of 20,778 RNA–protein pairs in 27.5 ms