RNA–Protein interactions for RNA: ENST00000400053.8

PTPRM-202, Transcript of protein tyrosine phosphatase, receptor type M, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene PTPRM, Length 5,292 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRM-202ENST00000400053 PHF14O94880 888 aa10.95□□□□□ -0.66
PTPRM-202ENST00000400053 NAIPQ13075 1403 aa10.95□□□□□ -0.66
PTPRM-202ENST00000400053 ST18O60284 1047 aa10.95□□□□□ -0.66
PTPRM-202ENST00000400053 PAK3O75914 559 aaPredicted RBP10.95□□□□□ -0.66
PTPRM-202ENST00000400053 HMMRO75330 724 aa10.94□□□□□ -0.66
PTPRM-202ENST00000400053 NBPF8Q3BBV2 869 aa10.94□□□□□ -0.66
PTPRM-202ENST00000400053 NGEFQ8N5V2 710 aa10.93□□□□□ -0.66
PTPRM-202ENST00000400053 RASSF8Q8NHQ8 419 aa10.93□□□□□ -0.66
PTPRM-202ENST00000400053 GORABQ5T7V8 394 aa10.93□□□□□ -0.66
PTPRM-202ENST00000400053 SLC4A10Q6U841 1118 aa10.93□□□□□ -0.66
PTPRM-202ENST00000400053 TROQ12816 1431 aaPredicted RBP10.93□□□□□ -0.66
PTPRM-202ENST00000400053 SKOR2Q2VWA4 1001 aaPredicted RBP10.93□□□□□ -0.66
PTPRM-202ENST00000400053 BRD4O60885 1362 aaPredicted RBP10.93□□□□□ -0.66
PTPRM-202ENST00000400053 E9PSI1 815 aa10.93□□□□□ -0.66
PTPRM-202ENST00000400053 FAM43AQ8N2R8 423 aa10.93□□□□□ -0.66
PTPRM-202ENST00000400053 MRC2Q9UBG0 1479 aa10.93□□□□□ -0.66
PTPRM-202ENST00000400053 HECW1Q76N89 1606 aa10.92□□□□□ -0.66
PTPRM-202ENST00000400053 KIAA1107Q9UPP5 1409 aa10.92□□□□□ -0.66
PTPRM-202ENST00000400053 IFT140Q96RY7 1462 aa10.92□□□□□ -0.66
PTPRM-202ENST00000400053 ANKRD45Q5TZF3 282 aa10.92□□□□□ -0.66
PTPRM-202ENST00000400053 BIVM-ERCC5R4GMW8 1640 aa10.92□□□□□ -0.66
PTPRM-202ENST00000400053 SUPT6HQ7KZ85 1726 aaKnown RBP10.92□□□□□ -0.66
PTPRM-202ENST00000400053 GPS2Q13227 327 aa10.92□□□□□ -0.66
PTPRM-202ENST00000400053 ELL2O00472 640 aaPredicted RBP10.92□□□□□ -0.66
PTPRM-202ENST00000400053 CHMP5Q9NZZ3 219 aa10.92□□□□□ -0.66
PTPRM-202ENST00000400053 PCF11O94913 1555 aaKnown RBP10.91□□□□□ -0.66
PTPRM-202ENST00000400053 TSR1Q2NL82 804 aaKnown RBP10.91□□□□□ -0.66
PTPRM-202ENST00000400053 CCDC70Q6NSX1 233 aa10.91□□□□□ -0.66
PTPRM-202ENST00000400053 STK31Q9BXU1 1019 aa10.91□□□□□ -0.66
PTPRM-202ENST00000400053 VGFO15240 615 aaPredicted RBP10.91□□□□□ -0.66
PTPRM-202ENST00000400053 APAF1O14727 1248 aa10.91□□□□□ -0.66
PTPRM-202ENST00000400053 CGNL1Q0VF96 1302 aa10.9□□□□□ -0.66
PTPRM-202ENST00000400053 HSP90B1P14625 803 aaKnown RBP10.9□□□□□ -0.66
PTPRM-202ENST00000400053 DAPK1P53355 1430 aa10.9□□□□□ -0.66
PTPRM-202ENST00000400053 PRG4Q92954 1404 aaPredicted RBP10.9□□□□□ -0.66
PTPRM-202ENST00000400053 SYNJ2O15056 1496 aa10.89□□□□□ -0.67
PTPRM-202ENST00000400053 NUTM2DQ5VT03 806 aaPredicted RBP10.89□□□□□ -0.67
PTPRM-202ENST00000400053 ROCK1Q13464 1354 aa10.89□□□□□ -0.67
PTPRM-202ENST00000400053 EPRSP07814 1512 aaKnown RBP10.89□□□□□ -0.67
PTPRM-202ENST00000400053 ZNF771Q7L3S4 317 aaPredicted RBP10.89□□□□□ -0.67
PTPRM-202ENST00000400053 TPM1P09493 284 aa10.89□□□□□ -0.67
PTPRM-202ENST00000400053 EVC2Q86UK5 1308 aa10.89□□□□□ -0.67
PTPRM-202ENST00000400053 FRAT2O75474 233 aaPredicted RBP10.88□□□□□ -0.67
PTPRM-202ENST00000400053 TAF7LQ5H9L4 462 aa10.88□□□□□ -0.67
PTPRM-202ENST00000400053 C9orf84Q5VXU9 1444 aa10.88□□□□□ -0.67
PTPRM-202ENST00000400053 ZKSCAN2Q63HK3 967 aa10.88□□□□□ -0.67
PTPRM-202ENST00000400053 CUL7Q14999 1698 aa10.88□□□□□ -0.67
PTPRM-202ENST00000400053 MARCH6O60337 910 aa10.88□□□□□ -0.67
PTPRM-202ENST00000400053 CALRP27797 417 aaKnown RBP10.88□□□□□ -0.67
PTPRM-202ENST00000400053 ZNF592Q92610 1267 aa10.87□□□□□ -0.67
PTPRM-202ENST00000400053 KIAA0586Q9BVV6 1533 aa10.87□□□□□ -0.67
PTPRM-202ENST00000400053 TPM2P07951 284 aa10.87□□□□□ -0.67
PTPRM-202ENST00000400053 UNC13AQ9UPW8 1703 aa10.87□□□□□ -0.67
PTPRM-202ENST00000400053 KIF16BQ96L93 1317 aa10.87□□□□□ -0.67
PTPRM-202ENST00000400053 SF3A1Q15459 793 aaKnown RBP10.87□□□□□ -0.67
PTPRM-202ENST00000400053 RILPL2Q969X0 211 aa10.86□□□□□ -0.67
PTPRM-202ENST00000400053 ATP6V1DQ9Y5K8 247 aa10.86□□□□□ -0.67
PTPRM-202ENST00000400053 PDZRN4Q6ZMN7 1036 aaPredicted RBP10.86□□□□□ -0.67
PTPRM-202ENST00000400053 CREBRFQ8IUR6 639 aa10.86□□□□□ -0.67
PTPRM-202ENST00000400053 CCAR2Q8N163 923 aaKnown RBP10.86□□□□□ -0.67
PTPRM-202ENST00000400053 G3V3G9 751 aa10.85□□□□□ -0.67
PTPRM-202ENST00000400053 LMOD3Q0VAK6 560 aa10.85□□□□□ -0.67
PTPRM-202ENST00000400053 DCAF8Q5TAQ9 597 aa10.85□□□□□ -0.67
PTPRM-202ENST00000400053 R3HCC1Q9Y3T6 440 aaKnown RBP10.85□□□□□ -0.67
PTPRM-202ENST00000400053 PNISRQ8TF01 805 aaKnown RBP10.85□□□□□ -0.67
PTPRM-202ENST00000400053 LAMC3Q9Y6N6 1575 aa10.85□□□□□ -0.67
PTPRM-202ENST00000400053 CSB-PGBD3P0DP91 1061 aa10.85□□□□□ -0.67
PTPRM-202ENST00000400053 CDK13Q14004 1512 aaKnown RBP10.85□□□□□ -0.67
PTPRM-202ENST00000400053 CHMP3Q9Y3E7 222 aa10.85□□□□□ -0.67
PTPRM-202ENST00000400053 SNAPC4Q5SXM2 1469 aa10.84□□□□□ -0.67
PTPRM-202ENST00000400053 BECN2A8MW95 431 aa10.84□□□□□ -0.67
PTPRM-202ENST00000400053 NBPF1Q3BBV0 1214 aa10.84□□□□□ -0.67
PTPRM-202ENST00000400053 GOLGA6L19H0YKK7 550 aa10.84□□□□□ -0.67
PTPRM-202ENST00000400053 IPO7O95373 1038 aaKnown RBP10.84□□□□□ -0.67
PTPRM-202ENST00000400053 MRE11P49959 708 aa10.84□□□□□ -0.67
PTPRM-202ENST00000400053 IQGAP2Q13576 1575 aa10.84□□□□□ -0.67
PTPRM-202ENST00000400053 ARHGAP5Q13017 1502 aa10.84□□□□□ -0.67
PTPRM-202ENST00000400053 TPD52L1Q16890 204 aaPredicted RBP10.83□□□□□ -0.68
PTPRM-202ENST00000400053 CCDC184Q52MB2 194 aa10.83□□□□□ -0.68
PTPRM-202ENST00000400053 C22orf23Q9BZE7 217 aa10.83□□□□□ -0.68
PTPRM-202ENST00000400053 ANKRD30BQ9BXX2 1392 aa10.83□□□□□ -0.68
PTPRM-202ENST00000400053 LRRFIP1Q32MZ4 808 aaKnown RBP10.83□□□□□ -0.68
PTPRM-202ENST00000400053 CDR1P51861 262 aa10.83□□□□□ -0.68
PTPRM-202ENST00000400053 CPLX2Q6PUV4 134 aaKnown RBP10.83□□□□□ -0.68
PTPRM-202ENST00000400053 ADAMTS8Q9UP79 889 aa10.83□□□□□ -0.68
PTPRM-202ENST00000400053 AFAP1Q8N556 730 aa10.83□□□□□ -0.68
PTPRM-202ENST00000400053 PKNOX2Q96KN3 472 aa10.83□□□□□ -0.68
PTPRM-202ENST00000400053 PRKCSHP14314 528 aaPredicted RBP10.82□□□□□ -0.68
PTPRM-202ENST00000400053 CCDC47Q96A33 483 aaKnown RBP10.82□□□□□ -0.68
PTPRM-202ENST00000400053 MCTP1Q6DN14 999 aa10.82□□□□□ -0.68
PTPRM-202ENST00000400053 SUGP2Q8IX01 1082 aaKnown RBP eCLIP10.82□□□□□ -0.681e-7■■□□□ 14.3
PTPRM-202ENST00000400053 PTPN23Q9H3S7 1636 aa10.82□□□□□ -0.68
PTPRM-202ENST00000400053 RRP12Q5JTH9 1297 aaKnown RBP10.82□□□□□ -0.68
PTPRM-202ENST00000400053 LNPKQ9C0E8 428 aa10.82□□□□□ -0.68
PTPRM-202ENST00000400053 TRAK2O60296 914 aa10.82□□□□□ -0.68
PTPRM-202ENST00000400053 RUNDC1Q96C34 613 aa10.82□□□□□ -0.68
PTPRM-202ENST00000400053 ZNF330Q9Y3S2 320 aaPredicted RBP10.82□□□□□ -0.68
PTPRM-202ENST00000400053 PLEKHH2Q8IVE3 1493 aa10.81□□□□□ -0.68
PTPRM-202ENST00000400053 PDE4CQ08493 712 aa10.81□□□□□ -0.68
PTPRM-202ENST00000400053 CDCA7LQ96GN5 454 aa10.81□□□□□ -0.68
Retrieved 100 of 20,778 RNA–protein pairs in 20.9 ms