RNA–Protein interactions for RNA: ENST00000399523.5

UFD1-202, Transcript of ubiquitin recognition factor in ER associated degradation 1, humanhuman

TSL 1 (best) BASIC

Gene UFD1, Length 1,007 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UFD1-202ENST00000399523 CHD2O14647 1828 aaKnown RBP28.5■■■□□ 2.15
UFD1-202ENST00000399523 SPATA31A6Q5VVP1 1343 aa28.5■■■□□ 2.15
UFD1-202ENST00000399523 BCANQ96GW7 911 aa28.5■■■□□ 2.15
UFD1-202ENST00000399523 DAPK1P53355 1430 aa28.5■■■□□ 2.15
UFD1-202ENST00000399523 FGD6Q6ZV73 1430 aa28.49■■■□□ 2.15
UFD1-202ENST00000399523 LRP6O75581 1613 aa28.48■■■□□ 2.15
UFD1-202ENST00000399523 PTPN23Q9H3S7 1636 aa28.48■■■□□ 2.15
UFD1-202ENST00000399523 NCOA3Q9Y6Q9 1424 aa28.47■■■□□ 2.15
UFD1-202ENST00000399523 ZNF772Q68DY9 489 aaPredicted RBP28.47■■■□□ 2.15
UFD1-202ENST00000399523 PLEKHG1Q9ULL1 1385 aa28.47■■■□□ 2.15
UFD1-202ENST00000399523 ZFYVE9O95405 1425 aa28.46■■■□□ 2.15
UFD1-202ENST00000399523 ANKRD30AQ9BXX3 1397 aa28.45■■■□□ 2.14
UFD1-202ENST00000399523 MEX3CQ5U5Q3 659 aaKnown RBP28.41■■■□□ 2.14
UFD1-202ENST00000399523 TBX22Q9Y458 520 aa28.41■■■□□ 2.14
UFD1-202ENST00000399523 HDGFP51858 240 aaKnown RBP28.4■■■□□ 2.14
UFD1-202ENST00000399523 TRIM52Q96A61 297 aa28.4■■■□□ 2.14
UFD1-202ENST00000399523 RPRD2Q5VT52 1461 aaKnown RBP28.4■■■□□ 2.14
UFD1-202ENST00000399523 AHDC1Q5TGY3 1603 aaPredicted RBP28.4■■■□□ 2.14
UFD1-202ENST00000399523 CHIC2Q9UKJ5 165 aa28.39■■■□□ 2.14
UFD1-202ENST00000399523 MYO5BQ9ULV0 1848 aa28.39■■■□□ 2.13
UFD1-202ENST00000399523 RIMS2Q9UQ26 1411 aa28.38■■■□□ 2.13
UFD1-202ENST00000399523 SHPRHQ149N8 1683 aa28.38■■■□□ 2.13
UFD1-202ENST00000399523 PPP1R15AO75807 674 aaPredicted RBP28.36■■■□□ 2.13
UFD1-202ENST00000399523 CADPS2Q86UW7 1296 aa28.36■■■□□ 2.13
UFD1-202ENST00000399523 C19orf44Q9H6X5 657 aa28.35■■■□□ 2.13
UFD1-202ENST00000399523 TMEM131LA2VDJ0 1609 aa28.34■■■□□ 2.13
UFD1-202ENST00000399523 RXRBP28702 533 aa28.34■■■□□ 2.13
UFD1-202ENST00000399523 C14orf37Q86TY3 774 aa28.34■■■□□ 2.13
UFD1-202ENST00000399523 SIPA1L2Q9P2F8 1722 aaPredicted RBP28.34■■■□□ 2.13
UFD1-202ENST00000399523 CDK12Q9NYV4 1490 aaPredicted RBP28.33■■■□□ 2.13
UFD1-202ENST00000399523 GCC2Q8IWJ2 1684 aa28.32■■■□□ 2.12
UFD1-202ENST00000399523 ATF3P18847 181 aa28.31■■■□□ 2.12
UFD1-202ENST00000399523 ADAMTS13Q76LX8 1427 aa28.31■■■□□ 2.12
UFD1-202ENST00000399523 PIK3R4Q99570 1358 aa28.3■■■□□ 2.12
UFD1-202ENST00000399523 ABCF1Q8NE71 845 aaKnown RBP eCLIP28.3■■■□□ 2.12
UFD1-202ENST00000399523 ADGRL2O95490 1459 aa28.29■■■□□ 2.12
UFD1-202ENST00000399523 DIP2AQ14689 1571 aa28.28■■■□□ 2.12
UFD1-202ENST00000399523 SRCAPQ6ZRS2 3230 aa28.27■■■□□ 2.12
UFD1-202ENST00000399523 LOC105371045A0A1W2PR82 267 aa28.27■■■□□ 2.12
UFD1-202ENST00000399523 BRINP3Q76B58 766 aa28.26■■■□□ 2.11
UFD1-202ENST00000399523 ANKRD50Q9ULJ7 1429 aa28.24■■■□□ 2.11
UFD1-202ENST00000399523 NUTM2BA6NNL0 878 aaPredicted RBP28.22■■■□□ 2.11
UFD1-202ENST00000399523 NUTM2EB1AL46 878 aaPredicted RBP28.22■■■□□ 2.11
UFD1-202ENST00000399523 NUTM2AQ8IVF1 878 aaPredicted RBP28.22■■■□□ 2.11
UFD1-202ENST00000399523 AFF2P51816 1311 aa28.21■■■□□ 2.11
UFD1-202ENST00000399523 APLP2Q06481 763 aa28.21■■■□□ 2.11
UFD1-202ENST00000399523 NUTM2DQ5VT03 806 aaPredicted RBP28.2■■■□□ 2.1
UFD1-202ENST00000399523 SETD5Q9C0A6 1442 aa28.19■■■□□ 2.1
UFD1-202ENST00000399523 CHGAP10645 457 aaKnown RBP28.19■■■□□ 2.1
UFD1-202ENST00000399523 AMOTL2Q9Y2J4 779 aa28.19■■■□□ 2.1
UFD1-202ENST00000399523 DCCP43146 1447 aa28.18■■■□□ 2.1
UFD1-202ENST00000399523 PTPRUQ92729 1446 aa28.17■■■□□ 2.1
UFD1-202ENST00000399523 TRPM2O94759 1503 aa28.16■■■□□ 2.1
UFD1-202ENST00000399523 ASXL1Q8IXJ9 1541 aa28.15■■■□□ 2.1
UFD1-202ENST00000399523 RBM6P78332 1123 aaKnown RBP28.12■■■□□ 2.09
UFD1-202ENST00000399523 LRRC59Q96AG4 307 aaKnown RBP28.12■■■□□ 2.09
UFD1-202ENST00000399523 NHSL1Q5SYE7 1610 aa28.11■■■□□ 2.09
UFD1-202ENST00000399523 RGS12O14924 1447 aa28.11■■■□□ 2.09
UFD1-202ENST00000399523 MST1RQ04912 1400 aa28.1■■■□□ 2.09
UFD1-202ENST00000399523 E9PCH4 1651 aa28.1■■■□□ 2.09
UFD1-202ENST00000399523 QTRT2Q9H974 415 aaKnown RBP28.1■■■□□ 2.09
UFD1-202ENST00000399523 UNC13BO14795 1591 aa28.1■■■□□ 2.09
UFD1-202ENST00000399523 XRN1Q8IZH2 1706 aaKnown RBP28.06■■■□□ 2.08
UFD1-202ENST00000399523 FAM50AQ14320 339 aaKnown RBP28.06■■■□□ 2.08
UFD1-202ENST00000399523 C8orf37Q96NL8 207 aa28.06■■■□□ 2.08
UFD1-202ENST00000399523 PNPLA6Q8IY17 1366 aa28.04■■■□□ 2.08
UFD1-202ENST00000399523 NRXN3Q9Y4C0 1643 aa28.02■■■□□ 2.08
UFD1-202ENST00000399523 SETBP1Q9Y6X0 1596 aa28.01■■■□□ 2.07
UFD1-202ENST00000399523 DDX17Q92841 729 aaKnown RBP28■■■□□ 2.07
UFD1-202ENST00000399523 IQGAP3Q86VI3 1631 aa28■■■□□ 2.07
UFD1-202ENST00000399523 NGLY1Q96IV0 654 aa27.98■■■□□ 2.07
UFD1-202ENST00000399523 ADGRL3Q9HAR2 1447 aa27.97■■■□□ 2.07
UFD1-202ENST00000399523 METP08581 1390 aa27.97■■■□□ 2.07
UFD1-202ENST00000399523 ATAD2Q6PL18 1390 aa27.96■■■□□ 2.07
UFD1-202ENST00000399523 ROCK1Q13464 1354 aa27.92■■■□□ 2.06
UFD1-202ENST00000399523 ADAMTS2O95450 1211 aa27.92■■■□□ 2.06
UFD1-202ENST00000399523 NUP155O75694 1391 aa27.9■■■□□ 2.06
UFD1-202ENST00000399523 LAMC1P11047 1609 aa27.9■■■□□ 2.06
UFD1-202ENST00000399523 NALCNQ8IZF0 1738 aa27.89■■■□□ 2.06
UFD1-202ENST00000399523 EP400Q96L91 3159 aa27.89■■■□□ 2.06
UFD1-202ENST00000399523 C1orf167Q5SNV9 1468 aa27.89■■■□□ 2.05
UFD1-202ENST00000399523 USP21Q9UK80 565 aa27.88■■■□□ 2.05
UFD1-202ENST00000399523 FOXD1Q16676 465 aa27.87■■■□□ 2.05
UFD1-202ENST00000399523 FNBP4Q8N3X1 1017 aaPredicted RBP27.87■■■□□ 2.05
UFD1-202ENST00000399523 TRPC5Q9UL62 973 aaPredicted RBP27.87■■■□□ 2.05
UFD1-202ENST00000399523 SOS2Q07890 1332 aaPredicted RBP27.87■■■□□ 2.05
UFD1-202ENST00000399523 ZRANB1Q9UGI0 708 aa27.86■■■□□ 2.05
UFD1-202ENST00000399523 ZNF326Q5BKZ1 582 aaKnown RBP27.84■■■□□ 2.05
UFD1-202ENST00000399523 PTCH1Q13635 1447 aa27.84■■■□□ 2.05
UFD1-202ENST00000399523 ATRNO75882 1429 aa27.82■■■□□ 2.04
UFD1-202ENST00000399523 SPHKAPQ2M3C7 1700 aa27.81■■■□□ 2.04
UFD1-202ENST00000399523 CCDC125Q86Z20 511 aa27.79■■■□□ 2.04
UFD1-202ENST00000399523 ORAI2Q96SN7 254 aa27.79■■■□□ 2.04
UFD1-202ENST00000399523 NEXMIFQ5QGS0 1516 aa27.77■■■□□ 2.04
UFD1-202ENST00000399523 COL22A1Q8NFW1 1626 aaPredicted RBP27.76■■■□□ 2.03
UFD1-202ENST00000399523 ROBO2Q9HCK4 1378 aa27.73■■■□□ 2.03
UFD1-202ENST00000399523 MYOM2P54296 1465 aa27.71■■■□□ 2.03
UFD1-202ENST00000399523 BCL9LQ86UU0 1499 aa27.71■■■□□ 2.03
UFD1-202ENST00000399523 PRAG1Q86YV5 1406 aa27.7■■■□□ 2.03
UFD1-202ENST00000399523 CLTCL1P53675 1640 aa27.69■■■□□ 2.02
Retrieved 100 of 20,778 RNA–protein pairs in 9.9 ms