RNA–Protein interactions for RNA: ENST00000395963.2

CCR9-203, Transcript of C-C motif chemokine receptor 9, humanhuman

TSL 1 (best) BASIC

Gene CCR9, Length 2,512 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCR9-203ENST00000395963 RALGAPBQ86X10 1494 aa12.64□□□□□ -0.39
CCR9-203ENST00000395963 PRAG1Q86YV5 1406 aa12.63□□□□□ -0.39
CCR9-203ENST00000395963 ARHGAP23Q9P227 1491 aa12.63□□□□□ -0.39
CCR9-203ENST00000395963 ABCF1Q8NE71 845 aaKnown RBP eCLIP12.63□□□□□ -0.39
CCR9-203ENST00000395963 FBXO31Q5XUX0 539 aaPredicted RBP12.62□□□□□ -0.39
CCR9-203ENST00000395963 CFAP65Q6ZU64 1925 aaKnown RBP12.62□□□□□ -0.39
CCR9-203ENST00000395963 TRPM1Q7Z4N2 1603 aa12.61□□□□□ -0.39
CCR9-203ENST00000395963 SETBP1Q9Y6X0 1596 aa12.61□□□□□ -0.39
CCR9-203ENST00000395963 VGFO15240 615 aaPredicted RBP12.61□□□□□ -0.39
CCR9-203ENST00000395963 GPRASP1Q5JY77 1395 aa12.6□□□□□ -0.39
CCR9-203ENST00000395963 PIK3C2GO75747 1445 aa12.6□□□□□ -0.39
CCR9-203ENST00000395963 MYO5BQ9ULV0 1848 aa12.59□□□□□ -0.39
CCR9-203ENST00000395963 TMEM2Q9UHN6 1383 aa12.59□□□□□ -0.39
CCR9-203ENST00000395963 DIP2AQ14689 1571 aa12.59□□□□□ -0.39
CCR9-203ENST00000395963 THEMISQ8N1K5 641 aaPredicted RBP12.59□□□□□ -0.39
CCR9-203ENST00000395963 STAG3Q9UJ98 1225 aa12.58□□□□□ -0.4
CCR9-203ENST00000395963 RIMS2Q9UQ26 1411 aa12.58□□□□□ -0.4
CCR9-203ENST00000395963 DCAF11Q8TEB1 546 aa12.57□□□□□ -0.4
CCR9-203ENST00000395963 ZNF326Q5BKZ1 582 aaKnown RBP12.56□□□□□ -0.4
CCR9-203ENST00000395963 PLEKHG1Q9ULL1 1385 aa12.55□□□□□ -0.4
CCR9-203ENST00000395963 CEBPAP49715 358 aaPredicted RBP12.55□□□□□ -0.4
CCR9-203ENST00000395963 RGL3Q3MIN7 710 aa12.55□□□□□ -0.4
CCR9-203ENST00000395963 CHGAP10645 457 aaKnown RBP12.54□□□□□ -0.4
CCR9-203ENST00000395963 SCAF11Q99590 1463 aaKnown RBP12.54□□□□□ -0.4
CCR9-203ENST00000395963 KDM4FA0A1W2PPD8 638 aa12.53□□□□□ -0.4
CCR9-203ENST00000395963 SLC24A1O60721 1099 aa12.53□□□□□ -0.4
CCR9-203ENST00000395963 EID1Q9Y6B2 187 aa12.53□□□□□ -0.4
CCR9-203ENST00000395963 MED14O60244 1454 aa12.53□□□□□ -0.4
CCR9-203ENST00000395963 POLR1AO95602 1720 aaPredicted RBP12.53□□□□□ -0.4
CCR9-203ENST00000395963 IQGAP1P46940 1657 aa12.52□□□□□ -0.41
CCR9-203ENST00000395963 SETD1AO15047 1707 aaKnown RBP12.51□□□□□ -0.41
CCR9-203ENST00000395963 C14orf93Q9H972 538 aaKnown RBP12.51□□□□□ -0.41
CCR9-203ENST00000395963 ADGRB1O14514 1584 aa12.51□□□□□ -0.41
CCR9-203ENST00000395963 NBPF8Q3BBV2 869 aa12.51□□□□□ -0.41
CCR9-203ENST00000395963 ROCK2O75116 1388 aaKnown RBP12.51□□□□□ -0.41
CCR9-203ENST00000395963 EIF3AQ14152 1382 aaKnown RBP12.51□□□□□ -0.41
CCR9-203ENST00000395963 PIK3R4Q99570 1358 aa12.51□□□□□ -0.41
CCR9-203ENST00000395963 ALKQ9UM73 1620 aa12.5□□□□□ -0.41
CCR9-203ENST00000395963 NRXN3Q9Y4C0 1643 aa12.5□□□□□ -0.41
CCR9-203ENST00000395963 KNDC1Q76NI1 1749 aa12.5□□□□□ -0.41
CCR9-203ENST00000395963 DLC1Q96QB1 1528 aa12.5□□□□□ -0.41
CCR9-203ENST00000395963 ADGRF5Q8IZF2 1346 aa12.49□□□□□ -0.41
CCR9-203ENST00000395963 KDM2AQ9Y2K7 1162 aa12.48□□□□□ -0.41
CCR9-203ENST00000395963 ANKLE2Q86XL3 938 aa12.47□□□□□ -0.41
CCR9-203ENST00000395963 LMTK3Q96Q04 1460 aa12.47□□□□□ -0.41
CCR9-203ENST00000395963 SBNO2Q9Y2G9 1366 aa12.47□□□□□ -0.41
CCR9-203ENST00000395963 EIF4G2P78344 907 aaKnown RBP eCLIP12.47□□□□□ -0.41
CCR9-203ENST00000395963 TECPR2O15040 1411 aa12.47□□□□□ -0.41
CCR9-203ENST00000395963 SIRT1Q96EB6 747 aa12.46□□□□□ -0.42
CCR9-203ENST00000395963 TXNDC2Q86VQ3 553 aa12.45□□□□□ -0.42
CCR9-203ENST00000395963 CARD11Q9BXL7 1154 aa12.45□□□□□ -0.42
CCR9-203ENST00000395963 TBX22Q9Y458 520 aa12.45□□□□□ -0.42
CCR9-203ENST00000395963 ADAMTS13Q76LX8 1427 aa12.45□□□□□ -0.42
CCR9-203ENST00000395963 USP47Q96K76 1375 aa12.45□□□□□ -0.42
CCR9-203ENST00000395963 CPS1P31327 1500 aa12.45□□□□□ -0.42
CCR9-203ENST00000395963 ASXL1Q8IXJ9 1541 aa12.45□□□□□ -0.42
CCR9-203ENST00000395963 LRPPRCP42704 1394 aaKnown RBP12.44□□□□□ -0.42
CCR9-203ENST00000395963 NPHP4O75161 1426 aaPredicted RBP12.43□□□□□ -0.42
CCR9-203ENST00000395963 ABCC11Q96J66 1382 aa12.43□□□□□ -0.42
CCR9-203ENST00000395963 FAM135BQ49AJ0 1406 aa12.43□□□□□ -0.42
CCR9-203ENST00000395963 ARHGEF28Q8N1W1 1705 aaKnown RBP12.42□□□□□ -0.42
CCR9-203ENST00000395963 YTHDC2Q9H6S0 1430 aaKnown RBP12.42□□□□□ -0.42
CCR9-203ENST00000395963 NWD1Q149M9 1564 aa12.42□□□□□ -0.42
CCR9-203ENST00000395963 PTCH1Q13635 1447 aa12.42□□□□□ -0.42
CCR9-203ENST00000395963 LTKP29376 864 aa12.41□□□□□ -0.42
CCR9-203ENST00000395963 CFAP70Q5T0N1 1121 aa12.41□□□□□ -0.42
CCR9-203ENST00000395963 XRN1Q8IZH2 1706 aaKnown RBP12.41□□□□□ -0.42
CCR9-203ENST00000395963 ZNF316A6NFI3 1004 aaPredicted RBP12.4□□□□□ -0.42
CCR9-203ENST00000395963 PUS7Q96PZ0 661 aaKnown RBP12.39□□□□□ -0.43
CCR9-203ENST00000395963 PLPPR3Q6T4P5 718 aa12.39□□□□□ -0.43
CCR9-203ENST00000395963 NBPF1Q3BBV0 1214 aa12.38□□□□□ -0.43
CCR9-203ENST00000395963 NKTRP30414 1462 aaKnown RBP12.38□□□□□ -0.43
CCR9-203ENST00000395963 CDCA8Q53HL2 280 aa12.38□□□□□ -0.43
CCR9-203ENST00000395963 CHD2O14647 1828 aaKnown RBP12.38□□□□□ -0.43
CCR9-203ENST00000395963 ADGRB2O60241 1585 aa12.37□□□□□ -0.43
CCR9-203ENST00000395963 HSPA5P11021 654 aaKnown RBP12.37□□□□□ -0.43
CCR9-203ENST00000395963 QRICH2Q9H0J4 1663 aa12.37□□□□□ -0.43
CCR9-203ENST00000395963 DMRT2Q9Y5R5 561 aa12.37□□□□□ -0.43
CCR9-203ENST00000395963 NCOA3Q9Y6Q9 1424 aa12.36□□□□□ -0.43
CCR9-203ENST00000395963 CENPJQ9HC77 1338 aaPredicted RBP12.36□□□□□ -0.43
CCR9-203ENST00000395963 STRCQ7RTU9 1775 aa12.35□□□□□ -0.43
CCR9-203ENST00000395963 METP08581 1390 aa12.35□□□□□ -0.43
CCR9-203ENST00000395963 TMF1P82094 1093 aa12.33□□□□□ -0.44
CCR9-203ENST00000395963 NUTM2DQ5VT03 806 aaPredicted RBP12.33□□□□□ -0.44
CCR9-203ENST00000395963 BCANQ96GW7 911 aa12.33□□□□□ -0.44
CCR9-203ENST00000395963 NINLQ9Y2I6 1382 aa12.32□□□□□ -0.44
CCR9-203ENST00000395963 TESK2Q96S53 571 aa12.32□□□□□ -0.44
CCR9-203ENST00000395963 ST20-MTHFSA0A0A6YYL1 179 aa12.32□□□□□ -0.44
CCR9-203ENST00000395963 PTPRUQ92729 1446 aa12.31□□□□□ -0.44
CCR9-203ENST00000395963 KCNA6P17658 529 aa12.31□□□□□ -0.44
CCR9-203ENST00000395963 CCDC7Q96M83 1385 aa12.3□□□□□ -0.44
CCR9-203ENST00000395963 TMEM132EQ6IEE7 984 aa12.3□□□□□ -0.44
CCR9-203ENST00000395963 NCKAP5LQ9HCH0 1330 aa12.29□□□□□ -0.44
CCR9-203ENST00000395963 TRAK1Q9UPV9 953 aa12.29□□□□□ -0.44
CCR9-203ENST00000395963 EVC2Q86UK5 1308 aa12.29□□□□□ -0.44
CCR9-203ENST00000395963 CDC42BPGQ6DT37 1551 aa12.29□□□□□ -0.44
CCR9-203ENST00000395963 AMOTL2Q9Y2J4 779 aa12.28□□□□□ -0.44
CCR9-203ENST00000395963 ATAD2Q6PL18 1390 aa12.28□□□□□ -0.44
CCR9-203ENST00000395963 DCCP43146 1447 aa12.28□□□□□ -0.44
CCR9-203ENST00000395963 SLC26A8Q96RN1 970 aa12.28□□□□□ -0.44
Retrieved 100 of 20,778 RNA–protein pairs in 15.5 ms