RNA–Protein interactions for RNA: ENST00000395906.7

CDRT1-204, CMT1A duplicated region transcript 1, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene CDRT1, Length 2,571 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CDRT1-204ENST00000395906 HFM1A2PYH4 1435 aa12.36□□□□□ -0.43
CDRT1-204ENST00000395906 CDC42BPBQ9Y5S2 1711 aa12.36□□□□□ -0.43
CDRT1-204ENST00000395906 C8orf34Q49A92 452 aa12.35□□□□□ -0.43
CDRT1-204ENST00000395906 CCDC94Q9BW85 323 aaPredicted RBP12.35□□□□□ -0.43
CDRT1-204ENST00000395906 SECISBP2LQ93073 1101 aaKnown RBP12.35□□□□□ -0.43
CDRT1-204ENST00000395906 EFCAB2Q5VUJ9 269 aa12.34□□□□□ -0.43
CDRT1-204ENST00000395906 BECN1Q14457 450 aa12.34□□□□□ -0.43
CDRT1-204ENST00000395906 DYNC1I1O14576 645 aa12.33□□□□□ -0.43
CDRT1-204ENST00000395906 HSPA5P11021 654 aaKnown RBP12.33□□□□□ -0.44
CDRT1-204ENST00000395906 KTN1Q86UP2 1357 aaKnown RBP12.33□□□□□ -0.44
CDRT1-204ENST00000395906 SAMD9LQ8IVG5 1584 aa12.32□□□□□ -0.44
CDRT1-204ENST00000395906 ITSN2Q9NZM3 1697 aa12.32□□□□□ -0.44
CDRT1-204ENST00000395906 SYCP2Q9BX26 1530 aa12.32□□□□□ -0.44
CDRT1-204ENST00000395906 CDK11BP21127 795 aaKnown RBP12.32□□□□□ -0.44
CDRT1-204ENST00000395906 GZF1Q9H116 711 aaPredicted RBP12.32□□□□□ -0.44
CDRT1-204ENST00000395906 ARHGEF12Q9NZN5 1544 aa12.32□□□□□ -0.44
CDRT1-204ENST00000395906 ZSCAN30Q86W11 494 aa12.31□□□□□ -0.44
CDRT1-204ENST00000395906 PLCH2O75038 1416 aa12.31□□□□□ -0.44
CDRT1-204ENST00000395906 NCOA1Q15788 1441 aa12.31□□□□□ -0.44
CDRT1-204ENST00000395906 MBD5Q9P267 1494 aa12.31□□□□□ -0.44
CDRT1-204ENST00000395906 SKAP1Q86WV1 359 aa12.31□□□□□ -0.44
CDRT1-204ENST00000395906 GRWD1Q9BQ67 446 aaKnown RBP eCLIP12.31□□□□□ -0.44
CDRT1-204ENST00000395906 ANTXR1Q9H6X2 564 aa12.31□□□□□ -0.44
CDRT1-204ENST00000395906 RCAN3Q9UKA8 241 aa12.31□□□□□ -0.44
CDRT1-204ENST00000395906 FAM69CQ0P6D2 419 aa12.3□□□□□ -0.44
CDRT1-204ENST00000395906 DNMT1P26358 1616 aaKnown RBP12.3□□□□□ -0.44
CDRT1-204ENST00000395906 UQCRHLA0A096LP55 91 aa12.3□□□□□ -0.44
CDRT1-204ENST00000395906 UQCRHP07919 91 aa12.3□□□□□ -0.44
CDRT1-204ENST00000395906 C9orf84Q5VXU9 1444 aa12.3□□□□□ -0.44
CDRT1-204ENST00000395906 MCM4P33991 863 aa12.29□□□□□ -0.44
CDRT1-204ENST00000395906 R3HCC1Q9Y3T6 440 aaKnown RBP12.29□□□□□ -0.44
CDRT1-204ENST00000395906 TRAPPC8Q9Y2L5 1435 aa12.29□□□□□ -0.44
CDRT1-204ENST00000395906 SLKQ9H2G2 1235 aaPredicted RBP12.29□□□□□ -0.44
CDRT1-204ENST00000395906 PREX2Q70Z35 1606 aa12.29□□□□□ -0.44
CDRT1-204ENST00000395906 RAPGEF3O95398 923 aa12.28□□□□□ -0.44
CDRT1-204ENST00000395906 DNTTIP2Q5QJE6 756 aaKnown RBP12.28□□□□□ -0.44
CDRT1-204ENST00000395906 MPHOSPH9Q99550 1183 aa12.28□□□□□ -0.44
CDRT1-204ENST00000395906 ARID3AQ99856 593 aa12.28□□□□□ -0.44
CDRT1-204ENST00000395906 SLC4A1APQ9BWU0 796 aaKnown RBP12.28□□□□□ -0.44
CDRT1-204ENST00000395906 TRAK2O60296 914 aa12.28□□□□□ -0.44
CDRT1-204ENST00000395906 IRX3P78415 501 aaPredicted RBP12.28□□□□□ -0.44
CDRT1-204ENST00000395906 CCDC7Q96M83 1385 aa12.28□□□□□ -0.44
CDRT1-204ENST00000395906 MYO5CQ9NQX4 1742 aa12.27□□□□□ -0.44
CDRT1-204ENST00000395906 MSNP26038 577 aaKnown RBP12.27□□□□□ -0.44
CDRT1-204ENST00000395906 ANKRD30AQ9BXX3 1397 aa12.27□□□□□ -0.44
CDRT1-204ENST00000395906 FANCAO15360 1455 aa12.27□□□□□ -0.45
CDRT1-204ENST00000395906 RGS22Q8NE09 1264 aa12.27□□□□□ -0.45
CDRT1-204ENST00000395906 KIF15Q9NS87 1388 aa12.27□□□□□ -0.45
CDRT1-204ENST00000395906 CD109Q6YHK3 1445 aa12.27□□□□□ -0.45
CDRT1-204ENST00000395906 TRHP20396 242 aaPredicted RBP12.26□□□□□ -0.45
CDRT1-204ENST00000395906 EIF4G2P78344 907 aaKnown RBP eCLIP12.26□□□□□ -0.45
CDRT1-204ENST00000395906 CCDC173Q0VFZ6 552 aa12.26□□□□□ -0.45
CDRT1-204ENST00000395906 KDM2BQ8NHM5 1336 aa12.26□□□□□ -0.45
CDRT1-204ENST00000395906 CENPQQ7L2Z9 268 aaPredicted RBP12.25□□□□□ -0.45
CDRT1-204ENST00000395906 ANKRD50Q9ULJ7 1429 aa12.25□□□□□ -0.45
CDRT1-204ENST00000395906 SCAPERQ9BY12 1400 aa12.25□□□□□ -0.45
CDRT1-204ENST00000395906 ROCK1Q13464 1354 aa12.25□□□□□ -0.45
CDRT1-204ENST00000395906 PPP1R9BQ96SB3 815 aa12.25□□□□□ -0.45
CDRT1-204ENST00000395906 RNF216Q9NWF9 866 aaPredicted RBP12.25□□□□□ -0.45
CDRT1-204ENST00000395906 BCCIPQ9P287 314 aaKnown RBP eCLIP12.25□□□□□ -0.45
CDRT1-204ENST00000395906 CCDC141Q6ZP82 1450 aa12.24□□□□□ -0.45
CDRT1-204ENST00000395906 SPAG9O60271 1321 aaKnown RBP12.24□□□□□ -0.45
CDRT1-204ENST00000395906 SLC20A2Q08357 652 aa12.23□□□□□ -0.45
CDRT1-204ENST00000395906 VIRMAQ69YN4 1812 aaKnown RBP12.22□□□□□ -0.45
CDRT1-204ENST00000395906 DENND4BO75064 1496 aaPredicted RBP12.22□□□□□ -0.45
CDRT1-204ENST00000395906 NUP155O75694 1391 aa12.22□□□□□ -0.45
CDRT1-204ENST00000395906 SAMD1Q6SPF0 538 aaPredicted RBP12.22□□□□□ -0.45
CDRT1-204ENST00000395906 USP19O94966 1318 aa12.22□□□□□ -0.45
CDRT1-204ENST00000395906 ADGRL1O94910 1474 aa12.22□□□□□ -0.45
CDRT1-204ENST00000395906 PKD2Q13563 968 aa12.22□□□□□ -0.45
CDRT1-204ENST00000395906 ZNF500O60304 480 aaPredicted RBP12.21□□□□□ -0.45
CDRT1-204ENST00000395906 CRBNQ96SW2 442 aa12.21□□□□□ -0.45
CDRT1-204ENST00000395906 CSPP1Q1MSJ5 1256 aa12.21□□□□□ -0.46
CDRT1-204ENST00000395906 HS1BP3Q53T59 392 aa12.2□□□□□ -0.46
CDRT1-204ENST00000395906 ABCA9Q8IUA7 1624 aa12.2□□□□□ -0.46
CDRT1-204ENST00000395906 DDX11L8A8MPP1 907 aa12.2□□□□□ -0.46
CDRT1-204ENST00000395906 SASS6Q6UVJ0 657 aa12.2□□□□□ -0.46
CDRT1-204ENST00000395906 PNISRQ8TF01 805 aaKnown RBP12.2□□□□□ -0.46
CDRT1-204ENST00000395906 CGNQ9P2M7 1197 aaKnown RBP12.2□□□□□ -0.46
CDRT1-204ENST00000395906 TSPOAP1O95153 1857 aa12.2□□□□□ -0.46
CDRT1-204ENST00000395906 PLEKHH2Q8IVE3 1493 aa12.19□□□□□ -0.46
CDRT1-204ENST00000395906 GCC2Q8IWJ2 1684 aa12.19□□□□□ -0.46
CDRT1-204ENST00000395906 KIAA1107Q9UPP5 1409 aa12.19□□□□□ -0.46
CDRT1-204ENST00000395906 PDE3BQ13370 1112 aa12.19□□□□□ -0.46
CDRT1-204ENST00000395906 DNAJC2Q99543 621 aaKnown RBP12.19□□□□□ -0.46
CDRT1-204ENST00000395906 CROCC2H7BZ55 1655 aa12.19□□□□□ -0.46
CDRT1-204ENST00000395906 ZBTB22O15209 634 aa12.19□□□□□ -0.46
CDRT1-204ENST00000395906 TMC1Q8TDI8 760 aa12.19□□□□□ -0.46
CDRT1-204ENST00000395906 ABCC1P33527 1531 aa12.18□□□□□ -0.46
CDRT1-204ENST00000395906 CBX1P83916 185 aa12.18□□□□□ -0.46
CDRT1-204ENST00000395906 ADGRL2O95490 1459 aa12.17□□□□□ -0.46
CDRT1-204ENST00000395906 POLR1AO95602 1720 aaPredicted RBP12.17□□□□□ -0.46
CDRT1-204ENST00000395906 KIF3BO15066 747 aa12.17□□□□□ -0.46
CDRT1-204ENST00000395906 IRX5P78411 483 aaPredicted RBP12.17□□□□□ -0.46
CDRT1-204ENST00000395906 ARHGEF5Q12774 1597 aa12.17□□□□□ -0.46
CDRT1-204ENST00000395906 GAS2L3Q86XJ1 694 aa12.16□□□□□ -0.46
CDRT1-204ENST00000395906 MMP14P50281 582 aa12.16□□□□□ -0.46
CDRT1-204ENST00000395906 CHMP5Q9NZZ3 219 aa12.16□□□□□ -0.46
CDRT1-204ENST00000395906 NOL7Q9UMY1 257 aaKnown RBP12.15□□□□□ -0.46
CDRT1-204ENST00000395906 LRPPRCP42704 1394 aaKnown RBP12.15□□□□□ -0.46
Retrieved 100 of 20,778 RNA–protein pairs in 15.6 ms