RNA–Protein interactions for RNA: ENST00000394989.6

SNCA-204, Transcript of synuclein alpha, humanhuman

TSL 1 (best) BASIC

Gene SNCA, Length 3,167 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Synapse .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SNCA-204ENST00000394989 ADGRF5Q8IZF2 1346 aa18.93■□□□□ 0.62
SNCA-204ENST00000394989 IRX6P78412 446 aaPredicted RBP18.93■□□□□ 0.62
SNCA-204ENST00000394989 GGT6Q6P531 493 aa18.93■□□□□ 0.62
SNCA-204ENST00000394989 ADGRB3O60242 1522 aa18.93■□□□□ 0.62
SNCA-204ENST00000394989 RICTORQ6R327 1708 aa18.93■□□□□ 0.62
SNCA-204ENST00000394989 DIP2CQ9Y2E4 1556 aa18.92■□□□□ 0.62
SNCA-204ENST00000394989 ABCC3O15438 1527 aa18.91■□□□□ 0.62
SNCA-204ENST00000394989 NRXN1Q9ULB1 1477 aa18.91■□□□□ 0.62
SNCA-204ENST00000394989 CFAP65Q6ZU64 1925 aaKnown RBP18.91■□□□□ 0.62
SNCA-204ENST00000394989 WASHC2CQ9Y4E1 1318 aa18.9■□□□□ 0.62
SNCA-204ENST00000394989 CFAP70Q5T0N1 1121 aa18.9■□□□□ 0.62
SNCA-204ENST00000394989 SENP3-EIF4A1A0A087X0R7 540 aa18.89■□□□□ 0.61
SNCA-204ENST00000394989 CYB5RLQ6IPT4 315 aa18.89■□□□□ 0.61
SNCA-204ENST00000394989 NLRP13Q86W25 1043 aa18.89■□□□□ 0.61
SNCA-204ENST00000394989 SIGLEC1Q9BZZ2 1709 aa18.88■□□□□ 0.61
SNCA-204ENST00000394989 CC2D1BQ5T0F9 858 aaKnown RBP18.88■□□□□ 0.61
SNCA-204ENST00000394989 CAMSAP1Q5T5Y3 1602 aa18.88■□□□□ 0.61
SNCA-204ENST00000394989 MYOM1P52179 1685 aa18.88■□□□□ 0.61
SNCA-204ENST00000394989 SMG6Q86US8 1419 aaKnown RBP18.88■□□□□ 0.61
SNCA-204ENST00000394989 RBM19Q9Y4C8 960 aaKnown RBP18.87■□□□□ 0.61
SNCA-204ENST00000394989 SYNMO15061 1565 aa18.86■□□□□ 0.61
SNCA-204ENST00000394989 NOS1P29475 1434 aa18.86■□□□□ 0.61
SNCA-204ENST00000394989 GLI2P10070 1586 aa18.86■□□□□ 0.61
SNCA-204ENST00000394989 RIMBP3CA6NJZ7 1639 aa18.86■□□□□ 0.61
SNCA-204ENST00000394989 RIMBP3BA6NNM3 1639 aa18.86■□□□□ 0.61
SNCA-204ENST00000394989 RIMBP3Q9UFD9 1639 aa18.86■□□□□ 0.61
SNCA-204ENST00000394989 PPLO60437 1756 aa18.85■□□□□ 0.61
SNCA-204ENST00000394989 EIF3AQ14152 1382 aaKnown RBP18.85■□□□□ 0.61
SNCA-204ENST00000394989 YEATS2Q9ULM3 1422 aa18.85■□□□□ 0.61
SNCA-204ENST00000394989 NUDCQ9Y266 331 aa18.82■□□□□ 0.6
SNCA-204ENST00000394989 PIK3C2BO00750 1634 aa18.82■□□□□ 0.6
SNCA-204ENST00000394989 PIK3C2GO75747 1445 aa18.81■□□□□ 0.6
SNCA-204ENST00000394989 KDM5AP29375 1690 aaKnown RBP18.81■□□□□ 0.6
SNCA-204ENST00000394989 CHGAP10645 457 aaKnown RBP18.81■□□□□ 0.6
SNCA-204ENST00000394989 MYO3AQ8NEV4 1616 aa18.81■□□□□ 0.6
SNCA-204ENST00000394989 ERVK-7P63135 1459 aa18.81■□□□□ 0.6
SNCA-204ENST00000394989 SETBP1Q9Y6X0 1596 aa18.8■□□□□ 0.6
SNCA-204ENST00000394989 CDCA8Q53HL2 280 aa18.8■□□□□ 0.6
SNCA-204ENST00000394989 AMER1Q5JTC6 1135 aaPredicted RBP18.79■□□□□ 0.6
SNCA-204ENST00000394989 ERICH6BQ5W0A0 696 aa18.79■□□□□ 0.6
SNCA-204ENST00000394989 DIP2BQ9P265 1576 aa18.79■□□□□ 0.6
SNCA-204ENST00000394989 ZC3H13Q5T200 1668 aaKnown RBP18.78■□□□□ 0.6
SNCA-204ENST00000394989 ADGRB1O14514 1584 aa18.77■□□□□ 0.6
SNCA-204ENST00000394989 ARHGAP31Q2M1Z3 1444 aa18.76■□□□□ 0.59
SNCA-204ENST00000394989 KNSTRNQ9Y448 316 aa18.76■□□□□ 0.59
SNCA-204ENST00000394989 RNF123Q5XPI4 1314 aa18.75■□□□□ 0.59
SNCA-204ENST00000394989 ASXL1Q8IXJ9 1541 aa18.75■□□□□ 0.59
SNCA-204ENST00000394989 C14orf93Q9H972 538 aaKnown RBP18.75■□□□□ 0.59
SNCA-204ENST00000394989 ZMYM4Q5VZL5 1548 aa18.75■□□□□ 0.59
SNCA-204ENST00000394989 FAM69CQ0P6D2 419 aa18.74■□□□□ 0.59
SNCA-204ENST00000394989 BLMP54132 1417 aaPredicted RBP18.74■□□□□ 0.59
SNCA-204ENST00000394989 SBNO2Q9Y2G9 1366 aa18.74■□□□□ 0.59
SNCA-204ENST00000394989 NEXMIFQ5QGS0 1516 aa18.73■□□□□ 0.59
SNCA-204ENST00000394989 RPGRIP1LQ68CZ1 1315 aa18.73■□□□□ 0.59
SNCA-204ENST00000394989 PPP4R2Q9NY27 417 aa18.73■□□□□ 0.59
SNCA-204ENST00000394989 INSRP06213 1382 aa18.72■□□□□ 0.59
SNCA-204ENST00000394989 PPP2R1AP30153 589 aa18.72■□□□□ 0.59
SNCA-204ENST00000394989 TSPOAP1O95153 1857 aa18.71■□□□□ 0.59
SNCA-204ENST00000394989 ERICH6Q7L0X2 663 aa18.71■□□□□ 0.59
SNCA-204ENST00000394989 TMEM132EQ6IEE7 984 aa18.7■□□□□ 0.58
SNCA-204ENST00000394989 SALL2Q9Y467 1007 aaPredicted RBP18.7■□□□□ 0.58
SNCA-204ENST00000394989 QRICH2Q9H0J4 1663 aa18.7■□□□□ 0.58
SNCA-204ENST00000394989 NPC1L1Q9UHC9 1359 aa18.7■□□□□ 0.58
SNCA-204ENST00000394989 TRAK1Q9UPV9 953 aa18.7■□□□□ 0.58
SNCA-204ENST00000394989 CENPJQ9HC77 1338 aaPredicted RBP18.7■□□□□ 0.58
SNCA-204ENST00000394989 MSH5O43196 834 aa18.69■□□□□ 0.58
SNCA-204ENST00000394989 SLC24A1O60721 1099 aa18.69■□□□□ 0.58
SNCA-204ENST00000394989 IDI1Q13907 227 aa18.69■□□□□ 0.58
SNCA-204ENST00000394989 PREX1Q8TCU6 1659 aa18.69■□□□□ 0.58
SNCA-204ENST00000394989 NUTM2DQ5VT03 806 aaPredicted RBP18.69■□□□□ 0.58
SNCA-204ENST00000394989 CARD14Q9BXL6 1004 aa18.68■□□□□ 0.58
SNCA-204ENST00000394989 MYO5BQ9ULV0 1848 aa18.68■□□□□ 0.58
SNCA-204ENST00000394989 ADAMTS8Q9UP79 889 aa18.66■□□□□ 0.58
SNCA-204ENST00000394989 B4GALNT3Q6L9W6 998 aa18.65■□□□□ 0.58
SNCA-204ENST00000394989 TMEM131LA2VDJ0 1609 aa18.65■□□□□ 0.58
SNCA-204ENST00000394989 ARHGEF28Q8N1W1 1705 aaKnown RBP18.64■□□□□ 0.57
SNCA-204ENST00000394989 VGFO15240 615 aaPredicted RBP18.64■□□□□ 0.57
SNCA-204ENST00000394989 CDCA7LQ96GN5 454 aa18.64■□□□□ 0.57
SNCA-204ENST00000394989 SLC52A1Q9NWF4 448 aa18.63■□□□□ 0.57
SNCA-204ENST00000394989 PDE3BQ13370 1112 aa18.63■□□□□ 0.57
SNCA-204ENST00000394989 REREQ9P2R6 1566 aa18.62■□□□□ 0.57
SNCA-204ENST00000394989 ZFYVE9O95405 1425 aa18.62■□□□□ 0.57
SNCA-204ENST00000394989 FBXO31Q5XUX0 539 aaPredicted RBP18.61■□□□□ 0.57
SNCA-204ENST00000394989 AGLP35573 1532 aa18.59■□□□□ 0.57
SNCA-204ENST00000394989 TULP4Q9NRJ4 1543 aa18.59■□□□□ 0.57
SNCA-204ENST00000394989 SLC12A5Q9H2X9 1139 aa18.58■□□□□ 0.57
SNCA-204ENST00000394989 RCAN3Q9UKA8 241 aa18.57■□□□□ 0.56
SNCA-204ENST00000394989 KIF13AQ9H1H9 1805 aa18.57■□□□□ 0.56
SNCA-204ENST00000394989 WDR43Q15061 677 aaKnown RBP eCLIP18.56■□□□□ 0.56
SNCA-204ENST00000394989 PLEKHH1Q9ULM0 1364 aa18.56■□□□□ 0.56
SNCA-204ENST00000394989 NSD3Q9BZ95 1437 aa18.56■□□□□ 0.56
SNCA-204ENST00000394989 CLTCQ00610 1675 aaKnown RBP18.56■□□□□ 0.56
SNCA-204ENST00000394989 RRP1P56182 461 aaKnown RBP18.56■□□□□ 0.56
SNCA-204ENST00000394989 SENP3Q9H4L4 574 aaPredicted RBP18.55■□□□□ 0.56
SNCA-204ENST00000394989 ZNF521Q96K83 1311 aa18.53■□□□□ 0.56
SNCA-204ENST00000394989 USP32Q8NFA0 1604 aa18.52■□□□□ 0.56
SNCA-204ENST00000394989 PTPRMP28827 1452 aa18.51■□□□□ 0.55
SNCA-204ENST00000394989 EVC2Q86UK5 1308 aa18.5■□□□□ 0.55
SNCA-204ENST00000394989 SPATA31D1Q6ZQQ2 1576 aa18.5■□□□□ 0.55
SNCA-204ENST00000394989 PUS7Q96PZ0 661 aaKnown RBP18.5■□□□□ 0.55
Retrieved 100 of 20,778 RNA–protein pairs in 18.4 ms