RNA–Protein interactions for RNA: ENST00000394892.2

ATG4A-205, Transcript of autophagy related 4A cysteine peptidase, humanhuman

TSL 3

Gene ATG4A, Length 935 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
ATG4A-205ENST00000394892 EID1Q9Y6B2 187 aa13.53□□□□□ -0.24
ATG4A-205ENST00000394892 IQGAP3Q86VI3 1631 aa13.51□□□□□ -0.25
ATG4A-205ENST00000394892 E9PCH4 1651 aa13.5□□□□□ -0.25
ATG4A-205ENST00000394892 KDM5AP29375 1690 aaKnown RBP13.5□□□□□ -0.25
ATG4A-205ENST00000394892 RIMS2Q9UQ26 1411 aa13.49□□□□□ -0.25
ATG4A-205ENST00000394892 NUTM2DQ5VT03 806 aaPredicted RBP13.49□□□□□ -0.25
ATG4A-205ENST00000394892 RBM33Q96EV2 1170 aaKnown RBP13.49□□□□□ -0.25
ATG4A-205ENST00000394892 TMEM131LA2VDJ0 1609 aa13.49□□□□□ -0.25
ATG4A-205ENST00000394892 KCNA6P17658 529 aa13.48□□□□□ -0.25
ATG4A-205ENST00000394892 PLEKHG1Q9ULL1 1385 aa13.47□□□□□ -0.25
ATG4A-205ENST00000394892 GCC2Q8IWJ2 1684 aa13.47□□□□□ -0.25
ATG4A-205ENST00000394892 CHGAP10645 457 aaKnown RBP13.46□□□□□ -0.25
ATG4A-205ENST00000394892 HFM1A2PYH4 1435 aa13.46□□□□□ -0.26
ATG4A-205ENST00000394892 ADAMTS13Q76LX8 1427 aa13.46□□□□□ -0.26
ATG4A-205ENST00000394892 TMEM94Q12767 1356 aa13.45□□□□□ -0.26
ATG4A-205ENST00000394892 TBX22Q9Y458 520 aa13.43□□□□□ -0.26
ATG4A-205ENST00000394892 PROSER2Q86WR7 435 aaPredicted RBP13.42□□□□□ -0.26
ATG4A-205ENST00000394892 MYO5BQ9ULV0 1848 aa13.41□□□□□ -0.26
ATG4A-205ENST00000394892 NWD1Q149M9 1564 aa13.41□□□□□ -0.26
ATG4A-205ENST00000394892 PTPRUQ92729 1446 aa13.4□□□□□ -0.26
ATG4A-205ENST00000394892 PPP1R15AO75807 674 aaPredicted RBP13.4□□□□□ -0.26
ATG4A-205ENST00000394892 ABCF1Q8NE71 845 aaKnown RBP eCLIP13.4□□□□□ -0.26
ATG4A-205ENST00000394892 BCANQ96GW7 911 aa13.4□□□□□ -0.26
ATG4A-205ENST00000394892 XIRP1Q702N8 1843 aaKnown RBP13.4□□□□□ -0.26
ATG4A-205ENST00000394892 TRIM52Q96A61 297 aa13.39□□□□□ -0.27
ATG4A-205ENST00000394892 HDGFP51858 240 aaKnown RBP13.38□□□□□ -0.27
ATG4A-205ENST00000394892 NKTRP30414 1462 aaKnown RBP13.37□□□□□ -0.27
ATG4A-205ENST00000394892 CLTCL1P53675 1640 aa13.37□□□□□ -0.27
ATG4A-205ENST00000394892 TRPM2O94759 1503 aa13.37□□□□□ -0.27
ATG4A-205ENST00000394892 FAM135BQ49AJ0 1406 aa13.37□□□□□ -0.27
ATG4A-205ENST00000394892 SLC4A1APQ9BWU0 796 aaKnown RBP13.36□□□□□ -0.27
ATG4A-205ENST00000394892 METP08581 1390 aa13.35□□□□□ -0.27
ATG4A-205ENST00000394892 NRXN3Q9Y4C0 1643 aa13.35□□□□□ -0.27
ATG4A-205ENST00000394892 SPHKAPQ2M3C7 1700 aa13.34□□□□□ -0.27
ATG4A-205ENST00000394892 AMOTL2Q9Y2J4 779 aa13.34□□□□□ -0.27
ATG4A-205ENST00000394892 NEXMIFQ5QGS0 1516 aa13.34□□□□□ -0.27
ATG4A-205ENST00000394892 PIK3R4Q99570 1358 aa13.33□□□□□ -0.27
ATG4A-205ENST00000394892 ZNF326Q5BKZ1 582 aaKnown RBP13.33□□□□□ -0.28
ATG4A-205ENST00000394892 RGS17Q9UGC6 210 aaPredicted RBP13.33□□□□□ -0.28
ATG4A-205ENST00000394892 SETBP1Q9Y6X0 1596 aa13.32□□□□□ -0.28
ATG4A-205ENST00000394892 CHD2O14647 1828 aaKnown RBP13.32□□□□□ -0.28
ATG4A-205ENST00000394892 MSH6P52701 1360 aa13.32□□□□□ -0.28
ATG4A-205ENST00000394892 MPHOSPH9Q99550 1183 aa13.31□□□□□ -0.28
ATG4A-205ENST00000394892 SLAIN2Q9P270 581 aa13.31□□□□□ -0.28
ATG4A-205ENST00000394892 DIP2AQ14689 1571 aa13.3□□□□□ -0.28
ATG4A-205ENST00000394892 NCOA3Q9Y6Q9 1424 aa13.3□□□□□ -0.28
ATG4A-205ENST00000394892 SPATA31E1Q6ZUB1 1445 aa13.28□□□□□ -0.28
ATG4A-205ENST00000394892 SETD5Q9C0A6 1442 aa13.28□□□□□ -0.28
ATG4A-205ENST00000394892 POTEAQ6S8J7 498 aa13.27□□□□□ -0.29
ATG4A-205ENST00000394892 C14orf37Q86TY3 774 aa13.27□□□□□ -0.29
ATG4A-205ENST00000394892 C19orf44Q9H6X5 657 aa13.27□□□□□ -0.29
ATG4A-205ENST00000394892 ADGRF5Q8IZF2 1346 aa13.26□□□□□ -0.29
ATG4A-205ENST00000394892 XRN1Q8IZH2 1706 aaKnown RBP13.26□□□□□ -0.29
ATG4A-205ENST00000394892 ROBO1Q9Y6N7 1651 aa13.25□□□□□ -0.29
ATG4A-205ENST00000394892 RAB3GAP2Q9H2M9 1393 aa13.25□□□□□ -0.29
ATG4A-205ENST00000394892 JCADQ9P266 1359 aa13.25□□□□□ -0.29
ATG4A-205ENST00000394892 RPGRIP1LQ68CZ1 1315 aa13.25□□□□□ -0.29
ATG4A-205ENST00000394892 ROBO2Q9HCK4 1378 aa13.24□□□□□ -0.29
ATG4A-205ENST00000394892 VGFO15240 615 aaPredicted RBP13.24□□□□□ -0.29
ATG4A-205ENST00000394892 RGL3Q3MIN7 710 aa13.23□□□□□ -0.29
ATG4A-205ENST00000394892 MEX3CQ5U5Q3 659 aaKnown RBP13.23□□□□□ -0.29
ATG4A-205ENST00000394892 BRINP3Q76B58 766 aa13.23□□□□□ -0.29
ATG4A-205ENST00000394892 ATF3P18847 181 aa13.22□□□□□ -0.29
ATG4A-205ENST00000394892 CADPS2Q86UW7 1296 aa13.22□□□□□ -0.29
ATG4A-205ENST00000394892 SIPA1L2Q9P2F8 1722 aaPredicted RBP13.22□□□□□ -0.29
ATG4A-205ENST00000394892 CCDC144AA2RUR9 1427 aa13.22□□□□□ -0.29
ATG4A-205ENST00000394892 ZNF772Q68DY9 489 aaPredicted RBP13.21□□□□□ -0.29
ATG4A-205ENST00000394892 MST1RQ04912 1400 aa13.21□□□□□ -0.3
ATG4A-205ENST00000394892 SPATA31A6Q5VVP1 1343 aa13.2□□□□□ -0.3
ATG4A-205ENST00000394892 SETD1AO15047 1707 aaKnown RBP13.2□□□□□ -0.3
ATG4A-205ENST00000394892 PRAG1Q86YV5 1406 aa13.2□□□□□ -0.3
ATG4A-205ENST00000394892 ADGRL3Q9HAR2 1447 aa13.2□□□□□ -0.3
ATG4A-205ENST00000394892 DDX17Q92841 729 aaKnown RBP13.19□□□□□ -0.3
ATG4A-205ENST00000394892 DCCP43146 1447 aa13.19□□□□□ -0.3
ATG4A-205ENST00000394892 PTCH1Q13635 1447 aa13.19□□□□□ -0.3
ATG4A-205ENST00000394892 COL16A1Q07092 1604 aaPredicted RBP13.18□□□□□ -0.3
ATG4A-205ENST00000394892 PHLPP1O60346 1717 aa13.18□□□□□ -0.3
ATG4A-205ENST00000394892 ANKRD30BQ9BXX2 1392 aa13.18□□□□□ -0.3
ATG4A-205ENST00000394892 ASXL1Q8IXJ9 1541 aa13.18□□□□□ -0.3
ATG4A-205ENST00000394892 KIF1BO60333 1816 aa13.18□□□□□ -0.3
ATG4A-205ENST00000394892 TMEM132EQ6IEE7 984 aa13.17□□□□□ -0.3
ATG4A-205ENST00000394892 PPLO60437 1756 aa13.16□□□□□ -0.3
ATG4A-205ENST00000394892 AHDC1Q5TGY3 1603 aaPredicted RBP13.16□□□□□ -0.3
ATG4A-205ENST00000394892 PIK3C2GO75747 1445 aa13.15□□□□□ -0.3
ATG4A-205ENST00000394892 LRP6O75581 1613 aa13.15□□□□□ -0.3
ATG4A-205ENST00000394892 WAPLQ7Z5K2 1190 aa13.15□□□□□ -0.3
ATG4A-205ENST00000394892 PLEKHH1Q9ULM0 1364 aa13.15□□□□□ -0.3
ATG4A-205ENST00000394892 ORAI2Q96SN7 254 aa13.14□□□□□ -0.31
ATG4A-205ENST00000394892 LRPPRCP42704 1394 aaKnown RBP13.14□□□□□ -0.31
ATG4A-205ENST00000394892 C1orf167Q5SNV9 1468 aa13.14□□□□□ -0.31
ATG4A-205ENST00000394892 NRXN1Q9ULB1 1477 aa13.14□□□□□ -0.31
ATG4A-205ENST00000394892 HRCP23327 699 aa13.13□□□□□ -0.31
ATG4A-205ENST00000394892 RXRBP28702 533 aa13.13□□□□□ -0.31
ATG4A-205ENST00000394892 CFAP70Q5T0N1 1121 aa13.13□□□□□ -0.31
ATG4A-205ENST00000394892 C14orf93Q9H972 538 aaKnown RBP13.13□□□□□ -0.31
ATG4A-205ENST00000394892 STK26Q9P289 416 aa13.13□□□□□ -0.31
ATG4A-205ENST00000394892 NALCNQ8IZF0 1738 aa13.13□□□□□ -0.31
ATG4A-205ENST00000394892 TECPR2O15040 1411 aa13.13□□□□□ -0.31
ATG4A-205ENST00000394892 ABCC11Q96J66 1382 aa13.12□□□□□ -0.31
ATG4A-205ENST00000394892 NUTM2BA6NNL0 878 aaPredicted RBP13.11□□□□□ -0.31
Retrieved 100 of 20,778 RNA–protein pairs in 11.4 ms