RNA–Protein interactions for RNA: ENST00000379018.7

PDLIM4-202, Transcript of PDZ and LIM domain 4, humanhuman

TSL 1 (best) BASIC

Gene PDLIM4, Length 1,006 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PDLIM4-202ENST00000379018 NWD1Q149M9 1564 aa27.66■■■□□ 2.02
PDLIM4-202ENST00000379018 NKTRP30414 1462 aaKnown RBP27.66■■■□□ 2.02
PDLIM4-202ENST00000379018 MSH6P52701 1360 aa27.66■■■□□ 2.02
PDLIM4-202ENST00000379018 POTEAQ6S8J7 498 aa27.65■■■□□ 2.02
PDLIM4-202ENST00000379018 SLC52A1Q9NWF4 448 aa27.65■■■□□ 2.02
PDLIM4-202ENST00000379018 ADGRL2O95490 1459 aa27.64■■■□□ 2.01
PDLIM4-202ENST00000379018 GCC2Q8IWJ2 1684 aa27.63■■■□□ 2.01
PDLIM4-202ENST00000379018 ANKRD50Q9ULJ7 1429 aa27.62■■■□□ 2.01
PDLIM4-202ENST00000379018 CHGAP10645 457 aaKnown RBP27.62■■■□□ 2.01
PDLIM4-202ENST00000379018 PHLPP1O60346 1717 aa27.61■■■□□ 2.01
PDLIM4-202ENST00000379018 RIMS2Q9UQ26 1411 aa27.6■■■□□ 2.01
PDLIM4-202ENST00000379018 NUTM2DQ5VT03 806 aaPredicted RBP27.58■■■□□ 2.01
PDLIM4-202ENST00000379018 SLAIN2Q9P270 581 aa27.58■■■□□ 2.01
PDLIM4-202ENST00000379018 ZFYVE9O95405 1425 aa27.58■■■□□ 2
PDLIM4-202ENST00000379018 RPRD2Q5VT52 1461 aaKnown RBP27.57■■■□□ 2
PDLIM4-202ENST00000379018 C14orf37Q86TY3 774 aa27.57■■■□□ 2
PDLIM4-202ENST00000379018 PLEKHG1Q9ULL1 1385 aa27.57■■■□□ 2
PDLIM4-202ENST00000379018 CHD2O14647 1828 aaKnown RBP27.56■■■□□ 2
PDLIM4-202ENST00000379018 SETD1AO15047 1707 aaKnown RBP27.53■■■□□ 2
PDLIM4-202ENST00000379018 TMEM131LA2VDJ0 1609 aa27.53■■■□□ 2
PDLIM4-202ENST00000379018 HDGFP51858 240 aaKnown RBP27.52■■■□□ 2
PDLIM4-202ENST00000379018 JCADQ9P266 1359 aa27.51■■□□□ 1.99
PDLIM4-202ENST00000379018 UNC13BO14795 1591 aa27.47■■□□□ 1.99
PDLIM4-202ENST00000379018 E9PCH4 1651 aa27.46■■□□□ 1.99
PDLIM4-202ENST00000379018 COL16A1Q07092 1604 aaPredicted RBP27.46■■□□□ 1.99
PDLIM4-202ENST00000379018 MEX3CQ5U5Q3 659 aaKnown RBP27.45■■□□□ 1.98
PDLIM4-202ENST00000379018 ABCF1Q8NE71 845 aaKnown RBP eCLIP27.45■■□□□ 1.98
PDLIM4-202ENST00000379018 TBX22Q9Y458 520 aa27.45■■□□□ 1.98
PDLIM4-202ENST00000379018 ADAMTS13Q76LX8 1427 aa27.42■■□□□ 1.98
PDLIM4-202ENST00000379018 ATF3P18847 181 aa27.41■■□□□ 1.98
PDLIM4-202ENST00000379018 SIPA1L2Q9P2F8 1722 aaPredicted RBP27.41■■□□□ 1.98
PDLIM4-202ENST00000379018 LRP6O75581 1613 aa27.4■■□□□ 1.98
PDLIM4-202ENST00000379018 ITGAEP38570 1179 aa27.39■■□□□ 1.98
PDLIM4-202ENST00000379018 DIP2AQ14689 1571 aa27.39■■□□□ 1.97
PDLIM4-202ENST00000379018 CADPS2Q86UW7 1296 aa27.38■■□□□ 1.97
PDLIM4-202ENST00000379018 IQGAP3Q86VI3 1631 aa27.37■■□□□ 1.97
PDLIM4-202ENST00000379018 NCOA3Q9Y6Q9 1424 aa27.36■■□□□ 1.97
PDLIM4-202ENST00000379018 C19orf44Q9H6X5 657 aa27.36■■□□□ 1.97
PDLIM4-202ENST00000379018 TRIM52Q96A61 297 aa27.35■■□□□ 1.97
PDLIM4-202ENST00000379018 TRPM2O94759 1503 aa27.35■■□□□ 1.97
PDLIM4-202ENST00000379018 NUP155O75694 1391 aa27.35■■□□□ 1.97
PDLIM4-202ENST00000379018 AMOTL2Q9Y2J4 779 aa27.34■■□□□ 1.97
PDLIM4-202ENST00000379018 SPATA31A6Q5VVP1 1343 aa27.34■■□□□ 1.97
PDLIM4-202ENST00000379018 AHDC1Q5TGY3 1603 aaPredicted RBP27.33■■□□□ 1.97
PDLIM4-202ENST00000379018 NUTM2BA6NNL0 878 aaPredicted RBP27.32■■□□□ 1.96
PDLIM4-202ENST00000379018 NUTM2EB1AL46 878 aaPredicted RBP27.32■■□□□ 1.96
PDLIM4-202ENST00000379018 NUTM2AQ8IVF1 878 aaPredicted RBP27.32■■□□□ 1.96
PDLIM4-202ENST00000379018 PIK3R4Q99570 1358 aa27.32■■□□□ 1.96
PDLIM4-202ENST00000379018 PTPRUQ92729 1446 aa27.32■■□□□ 1.96
PDLIM4-202ENST00000379018 ROCK1Q13464 1354 aa27.31■■□□□ 1.96
PDLIM4-202ENST00000379018 SHPRHQ149N8 1683 aa27.3■■□□□ 1.96
PDLIM4-202ENST00000379018 ZNF772Q68DY9 489 aaPredicted RBP27.29■■□□□ 1.96
PDLIM4-202ENST00000379018 BRINP3Q76B58 766 aa27.28■■□□□ 1.96
PDLIM4-202ENST00000379018 ZNF326Q5BKZ1 582 aaKnown RBP27.27■■□□□ 1.96
PDLIM4-202ENST00000379018 PPARGC1BQ86YN6 1023 aaKnown RBP27.26■■□□□ 1.95
PDLIM4-202ENST00000379018 NRXN3Q9Y4C0 1643 aa27.23■■□□□ 1.95
PDLIM4-202ENST00000379018 SPHKAPQ2M3C7 1700 aa27.22■■□□□ 1.95
PDLIM4-202ENST00000379018 ASXL1Q8IXJ9 1541 aa27.21■■□□□ 1.95
PDLIM4-202ENST00000379018 XRN1Q8IZH2 1706 aaKnown RBP27.21■■□□□ 1.95
PDLIM4-202ENST00000379018 RXRBP28702 533 aa27.19■■□□□ 1.94
PDLIM4-202ENST00000379018 UPF1Q92900 1129 aaKnown RBP eCLIP27.19■■□□□ 1.94
PDLIM4-202ENST00000379018 DCCP43146 1447 aa27.18■■□□□ 1.94
PDLIM4-202ENST00000379018 SETBP1Q9Y6X0 1596 aa27.18■■□□□ 1.94
PDLIM4-202ENST00000379018 DDX17Q92841 729 aaKnown RBP27.17■■□□□ 1.94
PDLIM4-202ENST00000379018 METP08581 1390 aa27.17■■□□□ 1.94
PDLIM4-202ENST00000379018 MST1RQ04912 1400 aa27.16■■□□□ 1.94
PDLIM4-202ENST00000379018 AFF2P51816 1311 aa27.16■■□□□ 1.94
PDLIM4-202ENST00000379018 NHSL1Q5SYE7 1610 aa27.13■■□□□ 1.93
PDLIM4-202ENST00000379018 SETD5Q9C0A6 1442 aa27.11■■□□□ 1.93
PDLIM4-202ENST00000379018 C8orf37Q96NL8 207 aa27.11■■□□□ 1.93
PDLIM4-202ENST00000379018 CLTCL1P53675 1640 aa27.1■■□□□ 1.93
PDLIM4-202ENST00000379018 NALCNQ8IZF0 1738 aa27.1■■□□□ 1.93
PDLIM4-202ENST00000379018 ADGRL3Q9HAR2 1447 aa27.09■■□□□ 1.93
PDLIM4-202ENST00000379018 LRRC59Q96AG4 307 aaKnown RBP27.09■■□□□ 1.93
PDLIM4-202ENST00000379018 NEXMIFQ5QGS0 1516 aa27.07■■□□□ 1.92
PDLIM4-202ENST00000379018 PNPLA6Q8IY17 1366 aa27.05■■□□□ 1.92
PDLIM4-202ENST00000379018 KIF1BO60333 1816 aa27.04■■□□□ 1.92
PDLIM4-202ENST00000379018 ADAMTS2O95450 1211 aa27.03■■□□□ 1.92
PDLIM4-202ENST00000379018 CDK12Q9NYV4 1490 aaPredicted RBP27.03■■□□□ 1.92
PDLIM4-202ENST00000379018 QTRT2Q9H974 415 aaKnown RBP27.02■■□□□ 1.92
PDLIM4-202ENST00000379018 RGS12O14924 1447 aa27■■□□□ 1.91
PDLIM4-202ENST00000379018 C1orf167Q5SNV9 1468 aa27■■□□□ 1.91
PDLIM4-202ENST00000379018 NGLY1Q96IV0 654 aa26.98■■□□□ 1.91
PDLIM4-202ENST00000379018 RBM6P78332 1123 aaKnown RBP26.97■■□□□ 1.91
PDLIM4-202ENST00000379018 ORAI2Q96SN7 254 aa26.95■■□□□ 1.9
PDLIM4-202ENST00000379018 ROBO2Q9HCK4 1378 aa26.95■■□□□ 1.9
PDLIM4-202ENST00000379018 PTCH1Q13635 1447 aa26.92■■□□□ 1.9
PDLIM4-202ENST00000379018 VGFO15240 615 aaPredicted RBP26.91■■□□□ 1.9
PDLIM4-202ENST00000379018 NAIPQ13075 1403 aa26.9■■□□□ 1.9
PDLIM4-202ENST00000379018 USP21Q9UK80 565 aa26.87■■□□□ 1.89
PDLIM4-202ENST00000379018 SOS2Q07890 1332 aaPredicted RBP26.87■■□□□ 1.89
PDLIM4-202ENST00000379018 LAMC1P11047 1609 aa26.85■■□□□ 1.89
PDLIM4-202ENST00000379018 SLC4A1APQ9BWU0 796 aaKnown RBP26.84■■□□□ 1.89
PDLIM4-202ENST00000379018 PPLO60437 1756 aa26.84■■□□□ 1.89
PDLIM4-202ENST00000379018 RRBP1Q9P2E9 1410 aaKnown RBP26.83■■□□□ 1.89
PDLIM4-202ENST00000379018 ESCO1Q5FWF5 840 aa26.82■■□□□ 1.88
PDLIM4-202ENST00000379018 HFM1A2PYH4 1435 aa26.82■■□□□ 1.88
PDLIM4-202ENST00000379018 XPCQ01831 940 aaPredicted RBP26.81■■□□□ 1.88
PDLIM4-202ENST00000379018 TRPC5Q9UL62 973 aaPredicted RBP26.81■■□□□ 1.88
PDLIM4-202ENST00000379018 ATAD2Q6PL18 1390 aa26.81■■□□□ 1.88
Retrieved 100 of 20,778 RNA–protein pairs in 15.8 ms