RNA–Protein interactions for RNA: ENST00000378161.5

NPHP4-202, Transcript of nephrocystin 4, humanhuman

TSL 2

Gene NPHP4, Length 4,370 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NPHP4-202ENST00000378161 OS9Q13438 667 aaPredicted RBP14.52□□□□□ -0.09
NPHP4-202ENST00000378161 AKNAQ7Z591 1439 aa14.51□□□□□ -0.09
NPHP4-202ENST00000378161 MYOM3Q5VTT5 1437 aa14.51□□□□□ -0.09
NPHP4-202ENST00000378161 CASKIN1Q8WXD9 1431 aa14.51□□□□□ -0.09
NPHP4-202ENST00000378161 FANCD2Q9BXW9 1451 aa14.51□□□□□ -0.09
NPHP4-202ENST00000378161 CFAP53Q96M91 514 aa14.5□□□□□ -0.09
NPHP4-202ENST00000378161 CWC15Q9P013 229 aaKnown RBP14.5□□□□□ -0.09
NPHP4-202ENST00000378161 GPS2Q13227 327 aa14.5□□□□□ -0.09
NPHP4-202ENST00000378161 RGS22Q8NE09 1264 aa14.49□□□□□ -0.09
NPHP4-202ENST00000378161 CUX1P39880 1505 aa14.49□□□□□ -0.09
NPHP4-202ENST00000378161 CCDC7Q96M83 1385 aa14.48□□□□□ -0.09
NPHP4-202ENST00000378161 SSR1P43307 286 aaKnown RBP14.48□□□□□ -0.09
NPHP4-202ENST00000378161 CTR9Q6PD62 1173 aa14.48□□□□□ -0.09
NPHP4-202ENST00000378161 KIF15Q9NS87 1388 aa14.48□□□□□ -0.09
NPHP4-202ENST00000378161 CNTLNQ9NXG0 1405 aa14.48□□□□□ -0.09
NPHP4-202ENST00000378161 TNNT1P13805 278 aa14.47□□□□□ -0.09
NPHP4-202ENST00000378161 HTATSF1O43719 755 aaKnown RBP14.47□□□□□ -0.09
NPHP4-202ENST00000378161 CFTRP13569 1480 aa14.46□□□□□ -0.09
NPHP4-202ENST00000378161 FYCO1Q9BQS8 1478 aa14.46□□□□□ -0.09
NPHP4-202ENST00000378161 TIAM1Q13009 1591 aa14.46□□□□□ -0.09
NPHP4-202ENST00000378161 MYBBP1AQ9BQG0 1328 aaKnown RBP14.46□□□□□ -0.1
NPHP4-202ENST00000378161 ZNF526Q8TF50 670 aaPredicted RBP14.45□□□□□ -0.1
NPHP4-202ENST00000378161 TDO2P48775 406 aa14.45□□□□□ -0.1
NPHP4-202ENST00000378161 MCM5P33992 734 aa14.45□□□□□ -0.1
NPHP4-202ENST00000378161 CARMIL2Q6F5E8 1435 aa14.45□□□□□ -0.1
NPHP4-202ENST00000378161 SETQ01105 290 aaPredicted RBP14.44□□□□□ -0.1
NPHP4-202ENST00000378161 CNKSR2Q8WXI2 1034 aa14.44□□□□□ -0.1
NPHP4-202ENST00000378161 FBXO3Q9UK99 471 aa14.44□□□□□ -0.1
NPHP4-202ENST00000378161 SMG6Q86US8 1419 aaKnown RBP14.44□□□□□ -0.1
NPHP4-202ENST00000378161 USP47Q96K76 1375 aa14.44□□□□□ -0.1
NPHP4-202ENST00000378161 CRBNQ96SW2 442 aa14.44□□□□□ -0.1
NPHP4-202ENST00000378161 MYCBPQ99417 103 aaPredicted RBP14.44□□□□□ -0.1
NPHP4-202ENST00000378161 WDR97A6NE52 1622 aa14.44□□□□□ -0.1
NPHP4-202ENST00000378161 NEUROD2Q15784 382 aa14.43□□□□□ -0.1
NPHP4-202ENST00000378161 PRIMPOLQ96LW4 560 aa14.43□□□□□ -0.1
NPHP4-202ENST00000378161 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP14.43□□□□□ -0.1
NPHP4-202ENST00000378161 VGFO15240 615 aaPredicted RBP14.43□□□□□ -0.1
NPHP4-202ENST00000378161 ESF1Q9H501 851 aaKnown RBP14.43□□□□□ -0.1
NPHP4-202ENST00000378161 KIF7Q2M1P5 1343 aa14.43□□□□□ -0.1
NPHP4-202ENST00000378161 ST20-MTHFSA0A0A6YYL1 179 aa14.42□□□□□ -0.1
NPHP4-202ENST00000378161 MYCNP04198 464 aaPredicted RBP14.42□□□□□ -0.1
NPHP4-202ENST00000378161 STAG3Q9UJ98 1225 aa14.42□□□□□ -0.1
NPHP4-202ENST00000378161 RIPK4P57078 832 aa14.42□□□□□ -0.1
NPHP4-202ENST00000378161 NCOA2Q15596 1464 aa14.41□□□□□ -0.1
NPHP4-202ENST00000378161 GOLIM4O00461 696 aa14.41□□□□□ -0.1
NPHP4-202ENST00000378161 CLSTN1O94985 981 aa14.41□□□□□ -0.1
NPHP4-202ENST00000378161 HFM1A2PYH4 1435 aa14.41□□□□□ -0.1
NPHP4-202ENST00000378161 GTF3C5Q9Y5Q8 519 aaPredicted RBP14.4□□□□□ -0.1
NPHP4-202ENST00000378161 ZFP91-CNTFA0A0A6YYC7 529 aaPredicted RBP14.39□□□□□ -0.11
NPHP4-202ENST00000378161 ZBTB22O15209 634 aa14.39□□□□□ -0.11
NPHP4-202ENST00000378161 SOX12O15370 315 aa14.39□□□□□ -0.11
NPHP4-202ENST00000378161 PHF14O94880 888 aa14.39□□□□□ -0.11
NPHP4-202ENST00000378161 GABPB1Q06547 395 aaPredicted RBP14.39□□□□□ -0.11
NPHP4-202ENST00000378161 SYAP1Q96A49 352 aaPredicted RBP14.39□□□□□ -0.11
NPHP4-202ENST00000378161 RAD54L2Q9Y4B4 1467 aa14.39□□□□□ -0.11
NPHP4-202ENST00000378161 MAPK8IP3Q9UPT6 1336 aa14.39□□□□□ -0.11
NPHP4-202ENST00000378161 HS1BP3Q53T59 392 aa14.38□□□□□ -0.11
NPHP4-202ENST00000378161 EFCAB5A4FU69 1503 aa14.38□□□□□ -0.11
NPHP4-202ENST00000378161 FEZ1Q99689 392 aa14.38□□□□□ -0.11
NPHP4-202ENST00000378161 ZSCAN20P17040 1043 aaPredicted RBP14.38□□□□□ -0.11
NPHP4-202ENST00000378161 SENP3Q9H4L4 574 aaPredicted RBP14.38□□□□□ -0.11
NPHP4-202ENST00000378161 TOMM22Q9NS69 142 aa14.38□□□□□ -0.11
NPHP4-202ENST00000378161 PLIN1O60240 522 aa14.38□□□□□ -0.11
NPHP4-202ENST00000378161 MAP3K1Q13233 1512 aa14.37□□□□□ -0.11
NPHP4-202ENST00000378161 GOLGA2Q08379 1002 aa14.37□□□□□ -0.11
NPHP4-202ENST00000378161 RBM28Q9NW13 759 aaKnown RBP14.37□□□□□ -0.11
NPHP4-202ENST00000378161 IRX5P78411 483 aaPredicted RBP14.37□□□□□ -0.11
NPHP4-202ENST00000378161 GAPVD1Q14C86 1478 aa14.37□□□□□ -0.11
NPHP4-202ENST00000378161 RASSF4Q9H2L5 321 aa14.36□□□□□ -0.11
NPHP4-202ENST00000378161 MFAP1P55081 439 aaKnown RBP14.36□□□□□ -0.11
NPHP4-202ENST00000378161 PSMD1Q99460 953 aa14.36□□□□□ -0.11
NPHP4-202ENST00000378161 EFCC1Q9HA90 598 aa14.36□□□□□ -0.11
NPHP4-202ENST00000378161 FSD2A1L4K1 749 aa14.35□□□□□ -0.11
NPHP4-202ENST00000378161 OGFRQ9NZT2 677 aa14.35□□□□□ -0.11
NPHP4-202ENST00000378161 RBM25P49756 843 aaKnown RBP14.35□□□□□ -0.11
NPHP4-202ENST00000378161 DRC7Q8IY82 874 aa14.35□□□□□ -0.11
NPHP4-202ENST00000378161 HSP90AB3PQ58FF7 597 aa14.34□□□□□ -0.11
NPHP4-202ENST00000378161 MNS1Q8NEH6 495 aa14.34□□□□□ -0.11
NPHP4-202ENST00000378161 ZBTB9Q96C00 473 aa14.34□□□□□ -0.11
NPHP4-202ENST00000378161 ZKSCAN5Q9Y2L8 839 aa14.34□□□□□ -0.11
NPHP4-202ENST00000378161 HMGXB3Q12766 1538 aa14.34□□□□□ -0.11
NPHP4-202ENST00000378161 MCCP23508 829 aa14.34□□□□□ -0.11
NPHP4-202ENST00000378161 SLC26A8Q96RN1 970 aa14.33□□□□□ -0.12
NPHP4-202ENST00000378161 BICRAQ9NZM4 1560 aa14.33□□□□□ -0.12
NPHP4-202ENST00000378161 JPH4Q96JJ6 628 aa14.33□□□□□ -0.12
NPHP4-202ENST00000378161 PEG3Q9GZU2 1588 aa14.33□□□□□ -0.12
NPHP4-202ENST00000378161 FOXD4L1Q9NU39 408 aa14.32□□□□□ -0.12
NPHP4-202ENST00000378161 RSPH14Q9UHP6 348 aa14.32□□□□□ -0.12
NPHP4-202ENST00000378161 DNAJC5BQ9UF47 199 aa14.32□□□□□ -0.12
NPHP4-202ENST00000378161 KANK1Q14678 1352 aa14.32□□□□□ -0.12
NPHP4-202ENST00000378161 HNRNPMP52272 730 aaKnown RBP eCLIP14.32□□□□□ -0.12
NPHP4-202ENST00000378161 MORC1Q86VD1 984 aa14.31□□□□□ -0.12
NPHP4-202ENST00000378161 TICAM2Q86XR7 235 aa14.31□□□□□ -0.12
NPHP4-202ENST00000378161 TPRNQ4KMQ1 711 aa14.31□□□□□ -0.12
NPHP4-202ENST00000378161 KRT222Q8N1A0 295 aa14.31□□□□□ -0.12
NPHP4-202ENST00000378161 MYRIPQ8NFW9 859 aa14.31□□□□□ -0.12
NPHP4-202ENST00000378161 CCDC144AA2RUR9 1427 aa14.3□□□□□ -0.12
NPHP4-202ENST00000378161 GTF2F1P35269 517 aaKnown RBP eCLIP14.3□□□□□ -0.12
NPHP4-202ENST00000378161 SMC4Q9NTJ3 1288 aa14.3□□□□□ -0.12
NPHP4-202ENST00000378161 NOL7Q9UMY1 257 aaKnown RBP14.3□□□□□ -0.12
Retrieved 100 of 20,778 RNA–protein pairs in 48.5 ms