RNA–Protein interactions for RNA: ENST00000378026.4

CKAP4-201, Transcript of cytoskeleton associated protein 4, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CKAP4, Length 3,093 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CKAP4-201ENST00000378026 AMER1Q5JTC6 1135 aaPredicted RBP20.32■□□□□ 0.84
CKAP4-201ENST00000378026 VSIG10Q8N0Z9 540 aa20.31■□□□□ 0.84
CKAP4-201ENST00000378026 MAGI2Q86UL8 1455 aa20.31■□□□□ 0.84
CKAP4-201ENST00000378026 MAPK8IP3Q9UPT6 1336 aa20.31■□□□□ 0.84
CKAP4-201ENST00000378026 PKNOX2Q96KN3 472 aa20.3■□□□□ 0.84
CKAP4-201ENST00000378026 A2MP01023 1474 aa20.3■□□□□ 0.84
CKAP4-201ENST00000378026 NKTRP30414 1462 aaKnown RBP20.3■□□□□ 0.84
CKAP4-201ENST00000378026 TRMT2AQ8IZ69 625 aaKnown RBP20.29■□□□□ 0.84
CKAP4-201ENST00000378026 BCL2L13Q9BXK5 485 aa20.29■□□□□ 0.84
CKAP4-201ENST00000378026 GPRASP1Q5JY77 1395 aa20.29■□□□□ 0.84
CKAP4-201ENST00000378026 CGNL1Q0VF96 1302 aa20.28■□□□□ 0.84
CKAP4-201ENST00000378026 E9PSI1 815 aa20.28■□□□□ 0.84
CKAP4-201ENST00000378026 TNNQ9UQP3 1299 aa20.28■□□□□ 0.84
CKAP4-201ENST00000378026 CENPJQ9HC77 1338 aaPredicted RBP20.28■□□□□ 0.84
CKAP4-201ENST00000378026 FAM135AQ9P2D6 1515 aa20.27■□□□□ 0.84
CKAP4-201ENST00000378026 GLIPR1L2Q4G1C9 344 aa20.27■□□□□ 0.84
CKAP4-201ENST00000378026 MCM4P33991 863 aa20.26■□□□□ 0.83
CKAP4-201ENST00000378026 PTPRGP23470 1445 aa20.26■□□□□ 0.83
CKAP4-201ENST00000378026 TBC1D32Q96NH3 1257 aa20.25■□□□□ 0.83
CKAP4-201ENST00000378026 RRP7AQ9Y3A4 280 aaKnown RBP20.25■□□□□ 0.83
CKAP4-201ENST00000378026 HSP90AA2PQ14568 343 aaPredicted RBP20.25■□□□□ 0.83
CKAP4-201ENST00000378026 PDZRN3Q9UPQ7 1066 aa20.25■□□□□ 0.83
CKAP4-201ENST00000378026 PCDHB15Q9Y5E8 787 aa20.24■□□□□ 0.83
CKAP4-201ENST00000378026 HSP90AA1P07900 732 aaKnown RBP20.24■□□□□ 0.83
CKAP4-201ENST00000378026 PDE3AQ14432 1141 aa20.24■□□□□ 0.83
CKAP4-201ENST00000378026 PLA2R1Q13018 1463 aa20.23■□□□□ 0.83
CKAP4-201ENST00000378026 PRDM15P57071 1507 aaPredicted RBP20.22■□□□□ 0.83
CKAP4-201ENST00000378026 EIF4G3O43432 1585 aaKnown RBP20.22■□□□□ 0.83
CKAP4-201ENST00000378026 WDR7Q9Y4E6 1490 aa20.22■□□□□ 0.83
CKAP4-201ENST00000378026 CDC42BPAQ5VT25 1732 aa20.22■□□□□ 0.83
CKAP4-201ENST00000378026 TRAK2O60296 914 aa20.22■□□□□ 0.83
CKAP4-201ENST00000378026 MFAP1P55081 439 aaKnown RBP20.21■□□□□ 0.83
CKAP4-201ENST00000378026 NLRP1Q9C000 1473 aa20.21■□□□□ 0.83
CKAP4-201ENST00000378026 RLBP1P12271 317 aa20.21■□□□□ 0.83
CKAP4-201ENST00000378026 CLCN1P35523 988 aa20.21■□□□□ 0.83
CKAP4-201ENST00000378026 CHMP7Q8WUX9 453 aaPredicted RBP20.21■□□□□ 0.83
CKAP4-201ENST00000378026 ZMYND15Q9H091 742 aa20.2■□□□□ 0.82
CKAP4-201ENST00000378026 FSD2A1L4K1 749 aa20.2■□□□□ 0.82
CKAP4-201ENST00000378026 TNNT2P45379 298 aaPredicted RBP20.2■□□□□ 0.82
CKAP4-201ENST00000378026 SHANK2Q9UPX8 1470 aa20.19■□□□□ 0.82
CKAP4-201ENST00000378026 PMFBP1Q8TBY8 1022 aa20.18■□□□□ 0.82
CKAP4-201ENST00000378026 WWC1Q8IX03 1113 aa20.18■□□□□ 0.82
CKAP4-201ENST00000378026 MYH16Q9H6N6 1097 aa20.16■□□□□ 0.82
CKAP4-201ENST00000378026 ADCY10Q96PN6 1610 aa20.16■□□□□ 0.82
CKAP4-201ENST00000378026 JPH4Q96JJ6 628 aa20.16■□□□□ 0.82
CKAP4-201ENST00000378026 MAGI1Q96QZ7 1491 aaPredicted RBP20.15■□□□□ 0.82
CKAP4-201ENST00000378026 CHMP5Q9NZZ3 219 aa20.15■□□□□ 0.82
CKAP4-201ENST00000378026 CDCA8Q53HL2 280 aa20.14■□□□□ 0.82
CKAP4-201ENST00000378026 C22orf23Q9BZE7 217 aa20.14■□□□□ 0.82
CKAP4-201ENST00000378026 RARSP54136 660 aaKnown RBP20.13■□□□□ 0.81
CKAP4-201ENST00000378026 MRE11P49959 708 aa20.13■□□□□ 0.81
CKAP4-201ENST00000378026 GRPEL1Q9HAV7 217 aa20.13■□□□□ 0.81
CKAP4-201ENST00000378026 GRIN2AQ12879 1464 aa20.13■□□□□ 0.81
CKAP4-201ENST00000378026 VIRMAQ69YN4 1812 aaKnown RBP20.13■□□□□ 0.81
CKAP4-201ENST00000378026 ABCC10Q5T3U5 1492 aa20.12■□□□□ 0.81
CKAP4-201ENST00000378026 ASXL1Q8IXJ9 1541 aa20.12■□□□□ 0.81
CKAP4-201ENST00000378026 PIK3C2GO75747 1445 aa20.12■□□□□ 0.81
CKAP4-201ENST00000378026 RWDD1Q9H446 243 aaPredicted RBP20.11■□□□□ 0.81
CKAP4-201ENST00000378026 ERBB4Q15303 1308 aa20.11■□□□□ 0.81
CKAP4-201ENST00000378026 ESPNB1AK53 854 aa20.11■□□□□ 0.81
CKAP4-201ENST00000378026 TRIM44Q96DX7 344 aaPredicted RBP20.1■□□□□ 0.81
CKAP4-201ENST00000378026 ATP10BO94823 1461 aa20.09■□□□□ 0.81
CKAP4-201ENST00000378026 CCDC141Q6ZP82 1450 aa20.09■□□□□ 0.81
CKAP4-201ENST00000378026 RRP9O43818 475 aaKnown RBP20.08■□□□□ 0.81
CKAP4-201ENST00000378026 CLASP1Q7Z460 1538 aa20.08■□□□□ 0.81
CKAP4-201ENST00000378026 HSCBQ8IWL3 235 aa20.08■□□□□ 0.8
CKAP4-201ENST00000378026 CARMIL2Q6F5E8 1435 aa20.07■□□□□ 0.8
CKAP4-201ENST00000378026 FOXD4L1Q9NU39 408 aa20.07■□□□□ 0.8
CKAP4-201ENST00000378026 CARD14Q9BXL6 1004 aa20.07■□□□□ 0.8
CKAP4-201ENST00000378026 MYO5CQ9NQX4 1742 aa20.06■□□□□ 0.8
CKAP4-201ENST00000378026 TCP11L2Q8N4U5 519 aa20.06■□□□□ 0.8
CKAP4-201ENST00000378026 FTSJ3Q8IY81 847 aaKnown RBP20.05■□□□□ 0.8
CKAP4-201ENST00000378026 EIF2AK4Q9P2K8 1649 aaKnown RBP20.05■□□□□ 0.8
CKAP4-201ENST00000378026 LAMC1P11047 1609 aa20.04■□□□□ 0.8
CKAP4-201ENST00000378026 NINLQ9Y2I6 1382 aa20.04■□□□□ 0.8
CKAP4-201ENST00000378026 GAS2L3Q86XJ1 694 aa20.04■□□□□ 0.8
CKAP4-201ENST00000378026 NUP160Q12769 1436 aa20.04■□□□□ 0.8
CKAP4-201ENST00000378026 ABCC2Q92887 1545 aa20.04■□□□□ 0.8
CKAP4-201ENST00000378026 DDX11L8A8MPP1 907 aa20.02■□□□□ 0.8
CKAP4-201ENST00000378026 SYNJ2O15056 1496 aa20.02■□□□□ 0.8
CKAP4-201ENST00000378026 RSPH4AQ5TD94 716 aa20■□□□□ 0.79
CKAP4-201ENST00000378026 TNPO1Q92973 898 aaKnown RBP20■□□□□ 0.79
CKAP4-201ENST00000378026 MVPQ14764 893 aaKnown RBP19.99■□□□□ 0.79
CKAP4-201ENST00000378026 MORC1Q86VD1 984 aa19.99■□□□□ 0.79
CKAP4-201ENST00000378026 RUNDC1Q96C34 613 aa19.99■□□□□ 0.79
CKAP4-201ENST00000378026 SAMD9LQ8IVG5 1584 aa19.99■□□□□ 0.79
CKAP4-201ENST00000378026 MRC2Q9UBG0 1479 aa19.99■□□□□ 0.79
CKAP4-201ENST00000378026 ARHGEF5Q12774 1597 aa19.98■□□□□ 0.79
CKAP4-201ENST00000378026 HSP90AB1P08238 724 aaKnown RBP19.98■□□□□ 0.79
CKAP4-201ENST00000378026 SYNMO15061 1565 aa19.98■□□□□ 0.79
CKAP4-201ENST00000378026 SYCP2Q9BX26 1530 aa19.98■□□□□ 0.79
CKAP4-201ENST00000378026 CFAP70Q5T0N1 1121 aa19.98■□□□□ 0.79
CKAP4-201ENST00000378026 ZNF692Q9BU19 519 aaPredicted RBP19.98■□□□□ 0.79
CKAP4-201ENST00000378026 SCAF11Q99590 1463 aaKnown RBP19.97■□□□□ 0.79
CKAP4-201ENST00000378026 NGEFQ8N5V2 710 aa19.97■□□□□ 0.79
CKAP4-201ENST00000378026 ITPRIPQ8IWB1 547 aa19.97■□□□□ 0.79
CKAP4-201ENST00000378026 DZIP1LQ8IYY4 767 aaKnown RBP19.97■□□□□ 0.79
CKAP4-201ENST00000378026 TSR2Q969E8 191 aaKnown RBP19.97■□□□□ 0.79
CKAP4-201ENST00000378026 IFT140Q96RY7 1462 aa19.96■□□□□ 0.79
CKAP4-201ENST00000378026 ZKSCAN2Q63HK3 967 aa19.96■□□□□ 0.79
Retrieved 100 of 20,778 RNA–protein pairs in 44.7 ms