RNA–Protein interactions for RNA: ENST00000377819.9

RTN3-206, Transcript of reticulon 3, humanhuman

TSL 1 (best) BASIC

Gene RTN3, Length 4,937 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RTN3-206ENST00000377819 CWC15Q9P013 229 aaKnown RBP12.92□□□□□ -0.34
RTN3-206ENST00000377819 DIAPH3Q9NSV4 1193 aa12.91□□□□□ -0.34
RTN3-206ENST00000377819 SEPT7Q16181 437 aaKnown RBP12.91□□□□□ -0.34
RTN3-206ENST00000377819 BICD2Q8TD16 824 aa12.91□□□□□ -0.34
RTN3-206ENST00000377819 ABCC8Q09428 1581 aa12.91□□□□□ -0.34
RTN3-206ENST00000377819 RSPH6AQ9H0K4 717 aa12.91□□□□□ -0.34
RTN3-206ENST00000377819 SYCP1Q15431 976 aa12.9□□□□□ -0.34
RTN3-206ENST00000377819 KLHL34Q8N239 644 aa12.9□□□□□ -0.34
RTN3-206ENST00000377819 RILPL2Q969X0 211 aa12.9□□□□□ -0.34
RTN3-206ENST00000377819 LAMC3Q9Y6N6 1575 aa12.9□□□□□ -0.34
RTN3-206ENST00000377819 ERLIN2O94905 339 aa12.89□□□□□ -0.35
RTN3-206ENST00000377819 HSP90AB3PQ58FF7 597 aa12.89□□□□□ -0.35
RTN3-206ENST00000377819 INCENPQ9NQS7 918 aa12.89□□□□□ -0.35
RTN3-206ENST00000377819 CUX1P39880 1505 aa12.89□□□□□ -0.35
RTN3-206ENST00000377819 FBXW7Q969H0 707 aa12.88□□□□□ -0.35
RTN3-206ENST00000377819 PDCL3Q9H2J4 239 aa12.88□□□□□ -0.35
RTN3-206ENST00000377819 TERF2IPQ9NYB0 399 aa12.88□□□□□ -0.35
RTN3-206ENST00000377819 RCAN3Q9UKA8 241 aa12.88□□□□□ -0.35
RTN3-206ENST00000377819 ZFP91-CNTFA0A0A6YYC7 529 aaPredicted RBP12.88□□□□□ -0.35
RTN3-206ENST00000377819 RNF20Q5VTR2 975 aa12.88□□□□□ -0.35
RTN3-206ENST00000377819 NFXL1Q6ZNB6 911 aa12.88□□□□□ -0.35
RTN3-206ENST00000377819 CCDC73Q6ZRK6 1079 aa12.88□□□□□ -0.35
RTN3-206ENST00000377819 SEPT11Q9NVA2 429 aaKnown RBP12.87□□□□□ -0.35
RTN3-206ENST00000377819 GGT6Q6P531 493 aa12.87□□□□□ -0.35
RTN3-206ENST00000377819 HMGN5P82970 282 aaKnown RBP12.87□□□□□ -0.35
RTN3-206ENST00000377819 FOXD4L6Q3SYB3 417 aaPredicted RBP12.87□□□□□ -0.35
RTN3-206ENST00000377819 FOXD4L3Q6VB84 417 aaPredicted RBP12.87□□□□□ -0.35
RTN3-206ENST00000377819 DYDC1Q8WWB3 177 aa12.87□□□□□ -0.35
RTN3-206ENST00000377819 CLUAP1Q96AJ1 413 aa12.86□□□□□ -0.35
RTN3-206ENST00000377819 EID1Q9Y6B2 187 aa12.86□□□□□ -0.35
RTN3-206ENST00000377819 PPM1FP49593 454 aaPredicted RBP12.86□□□□□ -0.35
RTN3-206ENST00000377819 EVA1CP58658 441 aa12.86□□□□□ -0.35
RTN3-206ENST00000377819 IKQ13123 557 aaPredicted RBP12.86□□□□□ -0.35
RTN3-206ENST00000377819 RBM33Q96EV2 1170 aaKnown RBP12.86□□□□□ -0.35
RTN3-206ENST00000377819 LTV1Q96GA3 475 aaPredicted RBP12.86□□□□□ -0.35
RTN3-206ENST00000377819 SASS6Q6UVJ0 657 aa12.86□□□□□ -0.35
RTN3-206ENST00000377819 TEFQ10587 303 aa12.85□□□□□ -0.35
RTN3-206ENST00000377819 WASHC2AQ641Q2 1341 aa12.85□□□□□ -0.35
RTN3-206ENST00000377819 XBP1P17861 261 aa12.85□□□□□ -0.35
RTN3-206ENST00000377819 BRMS1Q9HCU9 246 aa12.85□□□□□ -0.35
RTN3-206ENST00000377819 CT47B1P0C2W7 299 aaPredicted RBP12.84□□□□□ -0.35
RTN3-206ENST00000377819 FAM13BQ9NYF5 915 aa12.84□□□□□ -0.35
RTN3-206ENST00000377819 AXDND1Q5T1B0 1012 aaPredicted RBP12.84□□□□□ -0.35
RTN3-206ENST00000377819 TTC5Q8N0Z6 440 aa12.84□□□□□ -0.35
RTN3-206ENST00000377819 NEBLO76041 1014 aa12.84□□□□□ -0.35
RTN3-206ENST00000377819 REC8O95072 547 aa12.83□□□□□ -0.36
RTN3-206ENST00000377819 KTN1Q86UP2 1357 aaKnown RBP12.83□□□□□ -0.36
RTN3-206ENST00000377819 C1orf141Q5JVX7 400 aa12.83□□□□□ -0.36
RTN3-206ENST00000377819 RALYLQ86SE5 291 aaKnown RBP12.83□□□□□ -0.36
RTN3-206ENST00000377819 DESP17661 470 aa12.83□□□□□ -0.36
RTN3-206ENST00000377819 LUC7LQ9NQ29 371 aaKnown RBP12.83□□□□□ -0.36
RTN3-206ENST00000377819 IFT57Q9NWB7 429 aa12.83□□□□□ -0.36
RTN3-206ENST00000377819 C9orf78Q9NZ63 289 aaPredicted RBP12.83□□□□□ -0.36
RTN3-206ENST00000377819 CHMP5Q9NZZ3 219 aa12.83□□□□□ -0.36
RTN3-206ENST00000377819 HSP90AB4PQ58FF6 505 aa12.82□□□□□ -0.36
RTN3-206ENST00000377819 OLFM4Q6UX06 510 aa12.82□□□□□ -0.36
RTN3-206ENST00000377819 CCDC66A2RUB6 948 aa12.82□□□□□ -0.36
RTN3-206ENST00000377819 GOLGA6L10A6NI86 522 aa12.82□□□□□ -0.36
RTN3-206ENST00000377819 ENOX2Q16206 610 aaKnown RBP12.82□□□□□ -0.36
RTN3-206ENST00000377819 RBM19Q9Y4C8 960 aaKnown RBP12.81□□□□□ -0.36
RTN3-206ENST00000377819 SKIDA1Q1XH10 827 aa12.81□□□□□ -0.36
RTN3-206ENST00000377819 GRIPAP1Q4V328 841 aa12.81□□□□□ -0.36
RTN3-206ENST00000377819 MEX3CQ5U5Q3 659 aaKnown RBP12.81□□□□□ -0.36
RTN3-206ENST00000377819 SDF4Q9BRK5 362 aa12.81□□□□□ -0.36
RTN3-206ENST00000377819 PHF23Q9BUL5 403 aaPredicted RBP12.81□□□□□ -0.36
RTN3-206ENST00000377819 CCDC112Q8NEF3 446 aa12.8□□□□□ -0.36
RTN3-206ENST00000377819 NAT10Q9H0A0 1025 aaKnown RBP12.8□□□□□ -0.36
RTN3-206ENST00000377819 KIF21AQ7Z4S6 1674 aa12.8□□□□□ -0.36
RTN3-206ENST00000377819 IFIT2P09913 472 aaKnown RBP12.8□□□□□ -0.36
RTN3-206ENST00000377819 KIAA0754O94854 1291 aa12.8□□□□□ -0.36
RTN3-206ENST00000377819 PIP4K2AP48426 406 aaPredicted RBP12.79□□□□□ -0.36
RTN3-206ENST00000377819 FILIP1LQ4L180 1135 aa12.79□□□□□ -0.36
RTN3-206ENST00000377819 ABCA5Q8WWZ7 1642 aa12.79□□□□□ -0.36
RTN3-206ENST00000377819 CLASRPQ8N2M8 674 aaKnown RBP12.79□□□□□ -0.36
RTN3-206ENST00000377819 CENPJQ9HC77 1338 aaPredicted RBP12.79□□□□□ -0.36
RTN3-206ENST00000377819 TARBP1Q13395 1621 aaKnown RBP12.79□□□□□ -0.36
RTN3-206ENST00000377819 VPS37CA5D8V6 355 aaPredicted RBP12.79□□□□□ -0.36
RTN3-206ENST00000377819 DDX58O95786 925 aaKnown RBP12.79□□□□□ -0.36
RTN3-206ENST00000377819 LEKR1Q6ZMV7 388 aa12.79□□□□□ -0.36
RTN3-206ENST00000377819 PDILTQ8N807 584 aa12.79□□□□□ -0.36
RTN3-206ENST00000377819 SMARCE1Q969G3 411 aa12.79□□□□□ -0.36
RTN3-206ENST00000377819 RABEP1Q15276 862 aa12.78□□□□□ -0.36
RTN3-206ENST00000377819 NF2P35240 595 aa12.78□□□□□ -0.36
RTN3-206ENST00000377819 TAF3Q5VWG9 929 aa12.78□□□□□ -0.36
RTN3-206ENST00000377819 PDZRN4Q6ZMN7 1036 aaPredicted RBP12.78□□□□□ -0.36
RTN3-206ENST00000377819 CDK5RAP3Q96JB5 506 aa12.78□□□□□ -0.36
RTN3-206ENST00000377819 IPO9Q96P70 1041 aaKnown RBP12.78□□□□□ -0.36
RTN3-206ENST00000377819 EIF3AQ14152 1382 aaKnown RBP12.78□□□□□ -0.36
RTN3-206ENST00000377819 KRT18P05783 430 aaKnown RBP12.77□□□□□ -0.36
RTN3-206ENST00000377819 SLTMQ9NWH9 1034 aaKnown RBP eCLIP12.77□□□□□ -0.36
RTN3-206ENST00000377819 CGNL1Q0VF96 1302 aa12.77□□□□□ -0.36
RTN3-206ENST00000377819 ZNHIT6Q9NWK9 470 aaKnown RBP12.77□□□□□ -0.37
RTN3-206ENST00000377819 USP8P40818 1118 aa12.77□□□□□ -0.37
RTN3-206ENST00000377819 G3BP1Q13283 466 aaKnown RBP eCLIP12.77□□□□□ -0.37
RTN3-206ENST00000377819 TAX1BP1Q86VP1 789 aa12.77□□□□□ -0.37
RTN3-206ENST00000377819 ANO2Q9NQ90 1003 aa12.77□□□□□ -0.37
RTN3-206ENST00000377819 TXLNAP40222 546 aa12.77□□□□□ -0.37
RTN3-206ENST00000377819 ANKRD45Q5TZF3 282 aa12.77□□□□□ -0.37
RTN3-206ENST00000377819 NGEFQ8N5V2 710 aa12.76□□□□□ -0.37
RTN3-206ENST00000377819 SMC3Q9UQE7 1217 aa12.76□□□□□ -0.37
Retrieved 100 of 20,778 RNA–protein pairs in 68.1 ms