RNA–Protein interactions for RNA: ENST00000376636.7

VPS13A-205, Transcript of vacuolar protein sorting 13 homolog A, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene VPS13A, Length 11,145 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13A-205ENST00000376636 ZFYVE27Q5T4F4 411 aa14.09□□□□□ -0.15
VPS13A-205ENST00000376636 ARHGAP35Q9NRY4 1499 aa14.09□□□□□ -0.15
VPS13A-205ENST00000376636 ERICH2A1L162 156 aa14.09□□□□□ -0.15
VPS13A-205ENST00000376636 TRDNQ13061 729 aa14.08□□□□□ -0.15
VPS13A-205ENST00000376636 SEPT7Q16181 437 aaKnown RBP14.08□□□□□ -0.16
VPS13A-205ENST00000376636 HMGN5P82970 282 aaKnown RBP14.08□□□□□ -0.16
VPS13A-205ENST00000376636 SAFBQ15424 915 aaKnown RBP eCLIP14.08□□□□□ -0.16
VPS13A-205ENST00000376636 TERF2IPQ9NYB0 399 aa14.08□□□□□ -0.16
VPS13A-205ENST00000376636 KIF27Q86VH2 1401 aa14.08□□□□□ -0.16
VPS13A-205ENST00000376636 CCDC73Q6ZRK6 1079 aa14.08□□□□□ -0.16
VPS13A-205ENST00000376636 AXDND1Q5T1B0 1012 aaPredicted RBP14.07□□□□□ -0.16
VPS13A-205ENST00000376636 BRMS1Q9HCU9 246 aa14.07□□□□□ -0.16
VPS13A-205ENST00000376636 SMARCE1Q969G3 411 aa14.07□□□□□ -0.16
VPS13A-205ENST00000376636 LETM1O95202 739 aaPredicted RBP14.07□□□□□ -0.16
VPS13A-205ENST00000376636 TXLNBQ8N3L3 684 aa14.07□□□□□ -0.16
VPS13A-205ENST00000376636 CT47B1P0C2W7 299 aaPredicted RBP14.07□□□□□ -0.16
VPS13A-205ENST00000376636 NUCB2P80303 420 aa14.06□□□□□ -0.16
VPS13A-205ENST00000376636 RABEP1Q15276 862 aa14.06□□□□□ -0.16
VPS13A-205ENST00000376636 ENOX2Q16206 610 aaKnown RBP14.06□□□□□ -0.16
VPS13A-205ENST00000376636 FOXD4L6Q3SYB3 417 aaPredicted RBP14.06□□□□□ -0.16
VPS13A-205ENST00000376636 FOXD4L3Q6VB84 417 aaPredicted RBP14.06□□□□□ -0.16
VPS13A-205ENST00000376636 KIF7Q2M1P5 1343 aa14.05□□□□□ -0.16
VPS13A-205ENST00000376636 NEFHP12036 1026 aa14.05□□□□□ -0.16
VPS13A-205ENST00000376636 LUC7LQ9NQ29 371 aaKnown RBP14.05□□□□□ -0.16
VPS13A-205ENST00000376636 DEF6Q9H4E7 631 aa14.05□□□□□ -0.16
VPS13A-205ENST00000376636 PKNOX2Q96KN3 472 aa14.05□□□□□ -0.16
VPS13A-205ENST00000376636 NASPP49321 788 aaPredicted RBP14.04□□□□□ -0.16
VPS13A-205ENST00000376636 CLASRPQ8N2M8 674 aaKnown RBP14.04□□□□□ -0.16
VPS13A-205ENST00000376636 SAFB2Q14151 953 aaKnown RBP eCLIP14.03□□□□□ -0.16
VPS13A-205ENST00000376636 IQCEQ6IPM2 695 aa14.03□□□□□ -0.16
VPS13A-205ENST00000376636 EIF3JO75822 258 aaKnown RBP14.03□□□□□ -0.16
VPS13A-205ENST00000376636 XBP1P17861 261 aa14.03□□□□□ -0.16
VPS13A-205ENST00000376636 SIN3AQ96ST3 1273 aa14.03□□□□□ -0.16
VPS13A-205ENST00000376636 ANKRD45Q5TZF3 282 aa14.03□□□□□ -0.16
VPS13A-205ENST00000376636 SETD5Q9C0A6 1442 aa14.02□□□□□ -0.16
VPS13A-205ENST00000376636 SYCP1Q15431 976 aa14.02□□□□□ -0.16
VPS13A-205ENST00000376636 ANO2Q9NQ90 1003 aa14.02□□□□□ -0.16
VPS13A-205ENST00000376636 TSHZ2Q9NRE2 1034 aa14.02□□□□□ -0.16
VPS13A-205ENST00000376636 DHX16O60231 1041 aaKnown RBP14.02□□□□□ -0.17
VPS13A-205ENST00000376636 RAD21O60216 631 aa14.02□□□□□ -0.17
VPS13A-205ENST00000376636 GBP2P32456 591 aaPredicted RBP14.02□□□□□ -0.17
VPS13A-205ENST00000376636 NFXL1Q6ZNB6 911 aa14.01□□□□□ -0.17
VPS13A-205ENST00000376636 CHMP5Q9NZZ3 219 aa14.01□□□□□ -0.17
VPS13A-205ENST00000376636 PIP4K2AP48426 406 aaPredicted RBP14.01□□□□□ -0.17
VPS13A-205ENST00000376636 VPS37DQ86XT2 251 aa14.01□□□□□ -0.17
VPS13A-205ENST00000376636 WWC2Q6AWC2 1192 aa14□□□□□ -0.17
VPS13A-205ENST00000376636 PDILTQ8N807 584 aa14□□□□□ -0.17
VPS13A-205ENST00000376636 SMC3Q9UQE7 1217 aa14□□□□□ -0.17
VPS13A-205ENST00000376636 CLUAP1Q96AJ1 413 aa14□□□□□ -0.17
VPS13A-205ENST00000376636 NLRP13Q86W25 1043 aa14□□□□□ -0.17
VPS13A-205ENST00000376636 KIF15Q9NS87 1388 aa13.99□□□□□ -0.17
VPS13A-205ENST00000376636 MEX3CQ5U5Q3 659 aaKnown RBP13.99□□□□□ -0.17
VPS13A-205ENST00000376636 CAVIN1Q6NZI2 390 aaKnown RBP13.99□□□□□ -0.17
VPS13A-205ENST00000376636 PAF1Q8N7H5 531 aa13.99□□□□□ -0.17
VPS13A-205ENST00000376636 ERLIN1O75477 346 aa13.99□□□□□ -0.17
VPS13A-205ENST00000376636 MRE11P49959 708 aa13.99□□□□□ -0.17
VPS13A-205ENST00000376636 CWC22Q9HCG8 908 aaKnown RBP13.98□□□□□ -0.17
VPS13A-205ENST00000376636 KAT6BQ8WYB5 2073 aa13.98□□□□□ -0.17
VPS13A-205ENST00000376636 EIF4G1Q04637 1599 aaKnown RBP13.98□□□□□ -0.17
VPS13A-205ENST00000376636 PDE4AP27815 886 aa13.98□□□□□ -0.17
VPS13A-205ENST00000376636 FILIP1LQ4L180 1135 aa13.98□□□□□ -0.17
VPS13A-205ENST00000376636 HSPA5P11021 654 aaKnown RBP13.98□□□□□ -0.17
VPS13A-205ENST00000376636 TNIKQ9UKE5 1360 aa13.98□□□□□ -0.17
VPS13A-205ENST00000376636 MAGEC2Q9UBF1 373 aaPredicted RBP13.98□□□□□ -0.17
VPS13A-205ENST00000376636 ZSCAN21Q9Y5A6 473 aaPredicted RBP13.98□□□□□ -0.17
VPS13A-205ENST00000376636 VPS37CA5D8V6 355 aaPredicted RBP13.97□□□□□ -0.17
VPS13A-205ENST00000376636 ANKRD62A6NC57 917 aa13.97□□□□□ -0.17
VPS13A-205ENST00000376636 INTS3Q68E01 1043 aaKnown RBP13.97□□□□□ -0.17
VPS13A-205ENST00000376636 STK26Q9P289 416 aa13.97□□□□□ -0.17
VPS13A-205ENST00000376636 ZNHIT6Q9NWK9 470 aaKnown RBP13.97□□□□□ -0.17
VPS13A-205ENST00000376636 C9orf78Q9NZ63 289 aaPredicted RBP13.96□□□□□ -0.17
VPS13A-205ENST00000376636 NINLQ9Y2I6 1382 aa13.96□□□□□ -0.17
VPS13A-205ENST00000376636 FANCIQ9NVI1 1328 aa13.96□□□□□ -0.17
VPS13A-205ENST00000376636 GIMAP7Q8NHV1 300 aa13.96□□□□□ -0.17
VPS13A-205ENST00000376636 KINO60870 393 aaKnown RBP13.96□□□□□ -0.18
VPS13A-205ENST00000376636 TXLNAP40222 546 aa13.96□□□□□ -0.18
VPS13A-205ENST00000376636 IFIT2P09913 472 aaKnown RBP13.95□□□□□ -0.18
VPS13A-205ENST00000376636 AMPHP49418 695 aa13.95□□□□□ -0.18
VPS13A-205ENST00000376636 SLC26A8Q96RN1 970 aa13.95□□□□□ -0.18
VPS13A-205ENST00000376636 DDX19BQ9UMR2 479 aa13.95□□□□□ -0.18
VPS13A-205ENST00000376636 ZKSCAN2Q63HK3 967 aa13.95□□□□□ -0.18
VPS13A-205ENST00000376636 TRIM5Q9C035 493 aa13.95□□□□□ -0.18
VPS13A-205ENST00000376636 CCDC9Q9Y3X0 531 aaKnown RBP13.95□□□□□ -0.18
VPS13A-205ENST00000376636 RALYLQ86SE5 291 aaKnown RBP13.94□□□□□ -0.18
VPS13A-205ENST00000376636 SDF4Q9BRK5 362 aa13.94□□□□□ -0.18
VPS13A-205ENST00000376636 PODXL2Q9NZ53 605 aa13.94□□□□□ -0.18
VPS13A-205ENST00000376636 E9PSI1 815 aa13.94□□□□□ -0.18
VPS13A-205ENST00000376636 ERC2O15083 957 aa13.94□□□□□ -0.18
VPS13A-205ENST00000376636 FEZ1Q99689 392 aa13.94□□□□□ -0.18
VPS13A-205ENST00000376636 TTLL5Q6EMB2 1281 aa13.93□□□□□ -0.18
VPS13A-205ENST00000376636 SKIDA1Q1XH10 827 aa13.93□□□□□ -0.18
VPS13A-205ENST00000376636 FBXW7Q969H0 707 aa13.93□□□□□ -0.18
VPS13A-205ENST00000376636 CCDC181Q5TID7 509 aa13.93□□□□□ -0.18
VPS13A-205ENST00000376636 C1orf141Q5JVX7 400 aa13.93□□□□□ -0.18
VPS13A-205ENST00000376636 CCAR1Q8IX12 1150 aaKnown RBP13.93□□□□□ -0.18
VPS13A-205ENST00000376636 PSMA5P28066 241 aa13.93□□□□□ -0.18
VPS13A-205ENST00000376636 MBD3O95983 291 aa13.93□□□□□ -0.18
VPS13A-205ENST00000376636 DESP17661 470 aa13.93□□□□□ -0.18
VPS13A-205ENST00000376636 PPM1EQ8WY54 764 aa13.93□□□□□ -0.18
VPS13A-205ENST00000376636 SMC2O95347 1197 aa13.92□□□□□ -0.18
Retrieved 100 of 20,778 RNA–protein pairs in 10.5 ms