RNA–Protein interactions for RNA: ENST00000376496.4

CLCN6-206, Transcript of chloride voltage-gated channel 6, humanhuman

TSL 5 BASIC

Gene CLCN6, Length 2,922 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLCN6-206ENST00000376496 IFT172Q9UG01 1749 aa17.43■□□□□ 0.38
CLCN6-206ENST00000376496 PREX1Q8TCU6 1659 aa17.43■□□□□ 0.38
CLCN6-206ENST00000376496 REREQ9P2R6 1566 aa17.42■□□□□ 0.38
CLCN6-206ENST00000376496 TMEM132EQ6IEE7 984 aa17.41■□□□□ 0.38
CLCN6-206ENST00000376496 PIK3C2BO00750 1634 aa17.41■□□□□ 0.38
CLCN6-206ENST00000376496 LAMC1P11047 1609 aa17.41■□□□□ 0.38
CLCN6-206ENST00000376496 MYOM2P54296 1465 aa17.41■□□□□ 0.38
CLCN6-206ENST00000376496 CCER2I3L3R5 266 aa17.4■□□□□ 0.38
CLCN6-206ENST00000376496 PRKRIP1Q9H875 184 aaPredicted RBP17.4■□□□□ 0.38
CLCN6-206ENST00000376496 NEURL4Q96JN8 1562 aa17.4■□□□□ 0.38
CLCN6-206ENST00000376496 MYO5BQ9ULV0 1848 aa17.4■□□□□ 0.38
CLCN6-206ENST00000376496 PLPPR3Q6T4P5 718 aa17.39■□□□□ 0.37
CLCN6-206ENST00000376496 STAC3Q96MF2 364 aa17.39■□□□□ 0.37
CLCN6-206ENST00000376496 PPLO60437 1756 aa17.39■□□□□ 0.37
CLCN6-206ENST00000376496 ESF1Q9H501 851 aaKnown RBP17.38■□□□□ 0.37
CLCN6-206ENST00000376496 ERVK-7P63135 1459 aa17.38■□□□□ 0.37
CLCN6-206ENST00000376496 IQGAP1P46940 1657 aa17.38■□□□□ 0.37
CLCN6-206ENST00000376496 SCAF1Q9H7N4 1312 aaKnown RBP17.38■□□□□ 0.37
CLCN6-206ENST00000376496 SLC52A1Q9NWF4 448 aa17.37■□□□□ 0.37
CLCN6-206ENST00000376496 SCAF11Q99590 1463 aaKnown RBP17.37■□□□□ 0.37
CLCN6-206ENST00000376496 STAG3Q9UJ98 1225 aa17.37■□□□□ 0.37
CLCN6-206ENST00000376496 TRAK1Q9UPV9 953 aa17.36■□□□□ 0.37
CLCN6-206ENST00000376496 NRXN1Q9ULB1 1477 aa17.36■□□□□ 0.37
CLCN6-206ENST00000376496 TMF1P82094 1093 aa17.35■□□□□ 0.37
CLCN6-206ENST00000376496 DNAJC5Q9H3Z4 198 aa17.35■□□□□ 0.37
CLCN6-206ENST00000376496 PIK3C2GO75747 1445 aa17.34■□□□□ 0.37
CLCN6-206ENST00000376496 NEXMIFQ5QGS0 1516 aa17.34■□□□□ 0.37
CLCN6-206ENST00000376496 ZMYM3Q14202 1370 aa17.34■□□□□ 0.37
CLCN6-206ENST00000376496 RPGRIP1LQ68CZ1 1315 aa17.33■□□□□ 0.37
CLCN6-206ENST00000376496 C14orf93Q9H972 538 aaKnown RBP17.33■□□□□ 0.37
CLCN6-206ENST00000376496 PPP6R1Q9UPN7 881 aa17.33■□□□□ 0.37
CLCN6-206ENST00000376496 CEBPAP49715 358 aaPredicted RBP17.33■□□□□ 0.36
CLCN6-206ENST00000376496 TMEM131LA2VDJ0 1609 aa17.33■□□□□ 0.36
CLCN6-206ENST00000376496 KIAA1210Q9ULL0 1709 aa17.32■□□□□ 0.36
CLCN6-206ENST00000376496 VGFO15240 615 aaPredicted RBP17.32■□□□□ 0.36
CLCN6-206ENST00000376496 PANK3Q9H999 370 aa17.3■□□□□ 0.36
CLCN6-206ENST00000376496 MRS2Q9HD23 443 aa17.3■□□□□ 0.36
CLCN6-206ENST00000376496 STK26Q9P289 416 aa17.29■□□□□ 0.36
CLCN6-206ENST00000376496 GTF3C3Q9Y5Q9 886 aa17.29■□□□□ 0.36
CLCN6-206ENST00000376496 FAM9BQ8IZU0 186 aa17.28■□□□□ 0.36
CLCN6-206ENST00000376496 EIF3AQ14152 1382 aaKnown RBP17.28■□□□□ 0.36
CLCN6-206ENST00000376496 SAFB2Q14151 953 aaKnown RBP eCLIP17.27■□□□□ 0.36
CLCN6-206ENST00000376496 SPATA31D1Q6ZQQ2 1576 aa17.27■□□□□ 0.36
CLCN6-206ENST00000376496 ADGRB1O14514 1584 aa17.27■□□□□ 0.36
CLCN6-206ENST00000376496 CC2D1BQ5T0F9 858 aaKnown RBP17.25■□□□□ 0.35
CLCN6-206ENST00000376496 A2ML1A8K2U0 1454 aa17.25■□□□□ 0.35
CLCN6-206ENST00000376496 PER1O15534 1290 aaPredicted RBP17.24■□□□□ 0.35
CLCN6-206ENST00000376496 CENPJQ9HC77 1338 aaPredicted RBP17.24■□□□□ 0.35
CLCN6-206ENST00000376496 SENP3-EIF4A1A0A087X0R7 540 aa17.24■□□□□ 0.35
CLCN6-206ENST00000376496 SETBP1Q9Y6X0 1596 aa17.23■□□□□ 0.35
CLCN6-206ENST00000376496 HNRNPUQ00839 825 aaKnown RBP eCLIP17.22■□□□□ 0.35
CLCN6-206ENST00000376496 TNRQ92752 1358 aa17.21■□□□□ 0.35
CLCN6-206ENST00000376496 ASXL1Q8IXJ9 1541 aa17.21■□□□□ 0.35
CLCN6-206ENST00000376496 RIMS2Q9UQ26 1411 aa17.2■□□□□ 0.34
CLCN6-206ENST00000376496 ZFYVE9O95405 1425 aa17.19■□□□□ 0.34
CLCN6-206ENST00000376496 QRICH2Q9H0J4 1663 aa17.18■□□□□ 0.34
CLCN6-206ENST00000376496 CDCA8Q53HL2 280 aa17.17■□□□□ 0.34
CLCN6-206ENST00000376496 MYOM1P52179 1685 aa17.16■□□□□ 0.34
CLCN6-206ENST00000376496 KTN1Q86UP2 1357 aaKnown RBP17.16■□□□□ 0.34
CLCN6-206ENST00000376496 BCANQ96GW7 911 aa17.16■□□□□ 0.34
CLCN6-206ENST00000376496 MYO3AQ8NEV4 1616 aa17.16■□□□□ 0.34
CLCN6-206ENST00000376496 KDM5AP29375 1690 aaKnown RBP17.16■□□□□ 0.34
CLCN6-206ENST00000376496 TMC1Q8TDI8 760 aa17.16■□□□□ 0.34
CLCN6-206ENST00000376496 ALKQ9UM73 1620 aa17.16■□□□□ 0.34
CLCN6-206ENST00000376496 ARHGEF28Q8N1W1 1705 aaKnown RBP17.15■□□□□ 0.34
CLCN6-206ENST00000376496 PRAM1Q96QH2 718 aa17.14■□□□□ 0.33
CLCN6-206ENST00000376496 KNSTRNQ9Y448 316 aa17.14■□□□□ 0.33
CLCN6-206ENST00000376496 MINK1Q8N4C8 1332 aaPredicted RBP17.14■□□□□ 0.33
CLCN6-206ENST00000376496 MYBBP1AQ9BQG0 1328 aaKnown RBP17.13■□□□□ 0.33
CLCN6-206ENST00000376496 FER1L4A9Z1Z3 1794 aa17.13■□□□□ 0.33
CLCN6-206ENST00000376496 RALBP1Q15311 655 aa17.13■□□□□ 0.33
CLCN6-206ENST00000376496 SLC12A5Q9H2X9 1139 aa17.13■□□□□ 0.33
CLCN6-206ENST00000376496 CABP2Q9NPB3 220 aa17.13■□□□□ 0.33
CLCN6-206ENST00000376496 YTHDC2Q9H6S0 1430 aaKnown RBP17.13■□□□□ 0.33
CLCN6-206ENST00000376496 PTPRMP28827 1452 aa17.13■□□□□ 0.33
CLCN6-206ENST00000376496 C3P01024 1663 aa17.13■□□□□ 0.33
CLCN6-206ENST00000376496 PARD3Q8TEW0 1356 aa17.12■□□□□ 0.33
CLCN6-206ENST00000376496 CARD14Q9BXL6 1004 aa17.12■□□□□ 0.33
CLCN6-206ENST00000376496 POGKQ9P215 609 aa17.12■□□□□ 0.33
CLCN6-206ENST00000376496 WAPLQ7Z5K2 1190 aa17.11■□□□□ 0.33
CLCN6-206ENST00000376496 SBNO2Q9Y2G9 1366 aa17.11■□□□□ 0.33
CLCN6-206ENST00000376496 LTKP29376 864 aa17.1■□□□□ 0.33
CLCN6-206ENST00000376496 AMER1Q5JTC6 1135 aaPredicted RBP17.1■□□□□ 0.33
CLCN6-206ENST00000376496 UBR1Q8IWV7 1749 aa17.1■□□□□ 0.33
CLCN6-206ENST00000376496 TULP4Q9NRJ4 1543 aa17.09■□□□□ 0.33
CLCN6-206ENST00000376496 PNISRQ8TF01 805 aaKnown RBP17.09■□□□□ 0.33
CLCN6-206ENST00000376496 METP08581 1390 aa17.09■□□□□ 0.33
CLCN6-206ENST00000376496 TMEM2Q9UHN6 1383 aa17.09■□□□□ 0.33
CLCN6-206ENST00000376496 PLEKHH1Q9ULM0 1364 aa17.08■□□□□ 0.32
CLCN6-206ENST00000376496 SRPK2P78362 688 aaKnown RBP17.07■□□□□ 0.32
CLCN6-206ENST00000376496 NRXN3Q9Y4C0 1643 aa17.07■□□□□ 0.32
CLCN6-206ENST00000376496 EVC2Q86UK5 1308 aa17.07■□□□□ 0.32
CLCN6-206ENST00000376496 ABCF1Q8NE71 845 aaKnown RBP eCLIP17.07■□□□□ 0.32
CLCN6-206ENST00000376496 TXNDC2Q86VQ3 553 aa17.06■□□□□ 0.32
CLCN6-206ENST00000376496 NLRP13Q86W25 1043 aa17.06■□□□□ 0.32
CLCN6-206ENST00000376496 SLC24A1O60721 1099 aa17.06■□□□□ 0.32
CLCN6-206ENST00000376496 SLC26A8Q96RN1 970 aa17.05■□□□□ 0.32
CLCN6-206ENST00000376496 SETD1AO15047 1707 aaKnown RBP17.05■□□□□ 0.32
CLCN6-206ENST00000376496 BRD4O60885 1362 aaPredicted RBP17.05■□□□□ 0.32
CLCN6-206ENST00000376496 RIMS1Q86UR5 1692 aaKnown RBP17.04■□□□□ 0.32
Retrieved 100 of 20,778 RNA–protein pairs in 22.9 ms