RNA–Protein interactions for RNA: ENST00000375661.5

LSM2-208, Transcript of LSM2 homolog, U6 small nuclear RNA and mRNA degradation associated, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene LSM2, Length 876 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LSM2-208ENST00000375661 SLC26A8Q96RN1 970 aa18.83■□□□□ 0.6
LSM2-208ENST00000375661 CHIC2Q9UKJ5 165 aa18.82■□□□□ 0.6
LSM2-208ENST00000375661 MSH6P52701 1360 aa18.81■□□□□ 0.6
LSM2-208ENST00000375661 GCC2Q8IWJ2 1684 aa18.81■□□□□ 0.6
LSM2-208ENST00000375661 PHLPP1O60346 1717 aa18.8■□□□□ 0.6
LSM2-208ENST00000375661 HDGFP51858 240 aaKnown RBP18.79■□□□□ 0.6
LSM2-208ENST00000375661 ZFYVE9O95405 1425 aa18.79■□□□□ 0.6
LSM2-208ENST00000375661 PLEKHG1Q9ULL1 1385 aa18.79■□□□□ 0.6
LSM2-208ENST00000375661 TMEM131LA2VDJ0 1609 aa18.78■□□□□ 0.6
LSM2-208ENST00000375661 ANKRD50Q9ULJ7 1429 aa18.78■□□□□ 0.6
LSM2-208ENST00000375661 NCOA3Q9Y6Q9 1424 aa18.77■□□□□ 0.6
LSM2-208ENST00000375661 BCANQ96GW7 911 aa18.76■□□□□ 0.59
LSM2-208ENST00000375661 POTEAQ6S8J7 498 aa18.75■□□□□ 0.59
LSM2-208ENST00000375661 SLAIN2Q9P270 581 aa18.75■□□□□ 0.59
LSM2-208ENST00000375661 UNC13BO14795 1591 aa18.75■□□□□ 0.59
LSM2-208ENST00000375661 RIMS2Q9UQ26 1411 aa18.74■□□□□ 0.59
LSM2-208ENST00000375661 JCADQ9P266 1359 aa18.74■□□□□ 0.59
LSM2-208ENST00000375661 RBM33Q96EV2 1170 aaKnown RBP18.74■□□□□ 0.59
LSM2-208ENST00000375661 DIP2AQ14689 1571 aa18.73■□□□□ 0.59
LSM2-208ENST00000375661 COL16A1Q07092 1604 aaPredicted RBP18.73■□□□□ 0.59
LSM2-208ENST00000375661 PPP1R15AO75807 674 aaPredicted RBP18.72■□□□□ 0.59
LSM2-208ENST00000375661 ABCF1Q8NE71 845 aaKnown RBP eCLIP18.72■□□□□ 0.59
LSM2-208ENST00000375661 TBX22Q9Y458 520 aa18.72■□□□□ 0.59
LSM2-208ENST00000375661 E9PCH4 1651 aa18.71■□□□□ 0.59
LSM2-208ENST00000375661 PIK3R4Q99570 1358 aa18.69■□□□□ 0.58
LSM2-208ENST00000375661 SIPA1L2Q9P2F8 1722 aaPredicted RBP18.69■□□□□ 0.58
LSM2-208ENST00000375661 FAM50AQ14320 339 aaKnown RBP18.69■□□□□ 0.58
LSM2-208ENST00000375661 IQGAP3Q86VI3 1631 aa18.68■□□□□ 0.58
LSM2-208ENST00000375661 AHDC1Q5TGY3 1603 aaPredicted RBP18.67■□□□□ 0.58
LSM2-208ENST00000375661 SHPRHQ149N8 1683 aa18.67■□□□□ 0.58
LSM2-208ENST00000375661 ADAMTS13Q76LX8 1427 aa18.66■□□□□ 0.58
LSM2-208ENST00000375661 SPATA31A6Q5VVP1 1343 aa18.66■□□□□ 0.58
LSM2-208ENST00000375661 SETD1AO15047 1707 aaKnown RBP18.66■□□□□ 0.58
LSM2-208ENST00000375661 CADPS2Q86UW7 1296 aa18.65■□□□□ 0.58
LSM2-208ENST00000375661 TRPM2O94759 1503 aa18.64■□□□□ 0.58
LSM2-208ENST00000375661 ROCK1Q13464 1354 aa18.64■□□□□ 0.57
LSM2-208ENST00000375661 C19orf44Q9H6X5 657 aa18.63■□□□□ 0.57
LSM2-208ENST00000375661 CHGAP10645 457 aaKnown RBP18.62■□□□□ 0.57
LSM2-208ENST00000375661 C14orf37Q86TY3 774 aa18.62■□□□□ 0.57
LSM2-208ENST00000375661 PPARGC1BQ86YN6 1023 aaKnown RBP18.61■□□□□ 0.57
LSM2-208ENST00000375661 LRP6O75581 1613 aa18.6■□□□□ 0.57
LSM2-208ENST00000375661 ATF3P18847 181 aa18.6■□□□□ 0.57
LSM2-208ENST00000375661 DCCP43146 1447 aa18.59■□□□□ 0.57
LSM2-208ENST00000375661 ZNF772Q68DY9 489 aaPredicted RBP18.59■□□□□ 0.57
LSM2-208ENST00000375661 XRN1Q8IZH2 1706 aaKnown RBP18.57■□□□□ 0.56
LSM2-208ENST00000375661 SPHKAPQ2M3C7 1700 aa18.57■□□□□ 0.56
LSM2-208ENST00000375661 SETBP1Q9Y6X0 1596 aa18.56■□□□□ 0.56
LSM2-208ENST00000375661 MEX3CQ5U5Q3 659 aaKnown RBP18.56■□□□□ 0.56
LSM2-208ENST00000375661 NRXN3Q9Y4C0 1643 aa18.56■□□□□ 0.56
LSM2-208ENST00000375661 NUTM2DQ5VT03 806 aaPredicted RBP18.55■□□□□ 0.56
LSM2-208ENST00000375661 AMOTL2Q9Y2J4 779 aa18.55■□□□□ 0.56
LSM2-208ENST00000375661 PTPRUQ92729 1446 aa18.55■□□□□ 0.56
LSM2-208ENST00000375661 NUP155O75694 1391 aa18.55■□□□□ 0.56
LSM2-208ENST00000375661 NHSL1Q5SYE7 1610 aa18.54■□□□□ 0.56
LSM2-208ENST00000375661 CDK12Q9NYV4 1490 aaPredicted RBP18.52■□□□□ 0.56
LSM2-208ENST00000375661 BRINP3Q76B58 766 aa18.52■□□□□ 0.56
LSM2-208ENST00000375661 ASXL1Q8IXJ9 1541 aa18.52■□□□□ 0.56
LSM2-208ENST00000375661 SETD5Q9C0A6 1442 aa18.5■□□□□ 0.55
LSM2-208ENST00000375661 MST1RQ04912 1400 aa18.49■□□□□ 0.55
LSM2-208ENST00000375661 UPF1Q92900 1129 aaKnown RBP eCLIP18.48■□□□□ 0.55
LSM2-208ENST00000375661 RXRBP28702 533 aa18.47■□□□□ 0.55
LSM2-208ENST00000375661 KIF1BO60333 1816 aa18.46■□□□□ 0.55
LSM2-208ENST00000375661 TRIM52Q96A61 297 aa18.46■□□□□ 0.55
LSM2-208ENST00000375661 NALCNQ8IZF0 1738 aa18.46■□□□□ 0.55
LSM2-208ENST00000375661 LRRC59Q96AG4 307 aaKnown RBP18.45■□□□□ 0.54
LSM2-208ENST00000375661 ADGRL3Q9HAR2 1447 aa18.45■□□□□ 0.54
LSM2-208ENST00000375661 NEXMIFQ5QGS0 1516 aa18.44■□□□□ 0.54
LSM2-208ENST00000375661 LAMC1P11047 1609 aa18.43■□□□□ 0.54
LSM2-208ENST00000375661 NUTM2BA6NNL0 878 aaPredicted RBP18.43■□□□□ 0.54
LSM2-208ENST00000375661 NUTM2EB1AL46 878 aaPredicted RBP18.43■□□□□ 0.54
LSM2-208ENST00000375661 NUTM2AQ8IVF1 878 aaPredicted RBP18.43■□□□□ 0.54
LSM2-208ENST00000375661 METP08581 1390 aa18.42■□□□□ 0.54
LSM2-208ENST00000375661 CLTCL1P53675 1640 aa18.42■□□□□ 0.54
LSM2-208ENST00000375661 ZNF326Q5BKZ1 582 aaKnown RBP18.42■□□□□ 0.54
LSM2-208ENST00000375661 AFF2P51816 1311 aa18.42■□□□□ 0.54
LSM2-208ENST00000375661 ITGAEP38570 1179 aa18.39■□□□□ 0.53
LSM2-208ENST00000375661 PNPLA6Q8IY17 1366 aa18.39■□□□□ 0.53
LSM2-208ENST00000375661 PTCH1Q13635 1447 aa18.37■□□□□ 0.53
LSM2-208ENST00000375661 RBM6P78332 1123 aaKnown RBP18.36■□□□□ 0.53
LSM2-208ENST00000375661 PRAG1Q86YV5 1406 aa18.36■□□□□ 0.53
LSM2-208ENST00000375661 C1orf167Q5SNV9 1468 aa18.35■□□□□ 0.53
LSM2-208ENST00000375661 RGS12O14924 1447 aa18.34■□□□□ 0.53
LSM2-208ENST00000375661 RRBP1Q9P2E9 1410 aaKnown RBP18.34■□□□□ 0.53
LSM2-208ENST00000375661 C8orf37Q96NL8 207 aa18.34■□□□□ 0.53
LSM2-208ENST00000375661 QTRT2Q9H974 415 aaKnown RBP18.34■□□□□ 0.53
LSM2-208ENST00000375661 VGFO15240 615 aaPredicted RBP18.33■□□□□ 0.52
LSM2-208ENST00000375661 PPLO60437 1756 aa18.32■□□□□ 0.52
LSM2-208ENST00000375661 COL22A1Q8NFW1 1626 aaPredicted RBP18.31■□□□□ 0.52
LSM2-208ENST00000375661 SOS2Q07890 1332 aaPredicted RBP18.31■□□□□ 0.52
LSM2-208ENST00000375661 DDX17Q92841 729 aaKnown RBP18.31■□□□□ 0.52
LSM2-208ENST00000375661 NGLY1Q96IV0 654 aa18.31■□□□□ 0.52
LSM2-208ENST00000375661 RPGRIP1LQ68CZ1 1315 aa18.3■□□□□ 0.52
LSM2-208ENST00000375661 HFM1A2PYH4 1435 aa18.29■□□□□ 0.52
LSM2-208ENST00000375661 NAIPQ13075 1403 aa18.29■□□□□ 0.52
LSM2-208ENST00000375661 MARF1Q9Y4F3 1742 aaKnown RBP18.28■□□□□ 0.52
LSM2-208ENST00000375661 ROBO2Q9HCK4 1378 aa18.28■□□□□ 0.52
LSM2-208ENST00000375661 CDC42BPGQ6DT37 1551 aa18.26■□□□□ 0.51
LSM2-208ENST00000375661 ATAD2Q6PL18 1390 aa18.26■□□□□ 0.51
LSM2-208ENST00000375661 ADAMTS2O95450 1211 aa18.25■□□□□ 0.51
LSM2-208ENST00000375661 ORAI2Q96SN7 254 aa18.25■□□□□ 0.51
Retrieved 100 of 20,778 RNA–protein pairs in 27.3 ms