RNA–Protein interactions for RNA: ENST00000371121.4

SMARCA1-201, Transcript of SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene SMARCA1, Length 3,564 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMARCA1-201ENST00000371121 VSIG10Q8N0Z9 540 aa15.1■□□□□ 0.01
SMARCA1-201ENST00000371121 AMER1Q5JTC6 1135 aaPredicted RBP15.09■□□□□ 0.01
SMARCA1-201ENST00000371121 SYNJ2O15056 1496 aa15.09■□□□□ 0.01
SMARCA1-201ENST00000371121 TBC1D32Q96NH3 1257 aa15.08■□□□□ 0
SMARCA1-201ENST00000371121 GOLGA2Q08379 1002 aa15.08■□□□□ 0
SMARCA1-201ENST00000371121 SHROOM2Q13796 1616 aa15.07■□□□□ 0
SMARCA1-201ENST00000371121 ARXQ96QS3 562 aa15.07■□□□□ 0
SMARCA1-201ENST00000371121 ZNF692Q9BU19 519 aaPredicted RBP15.07■□□□□ 0
SMARCA1-201ENST00000371121 SHPRHQ149N8 1683 aa15.06■□□□□ 0
SMARCA1-201ENST00000371121 UNC13BO14795 1591 aa15.05■□□□□ -0
SMARCA1-201ENST00000371121 ZNF777Q9ULD5 760 aaPredicted RBP15.05■□□□□ -0
SMARCA1-201ENST00000371121 TNNQ9UQP3 1299 aa15.05■□□□□ -0
SMARCA1-201ENST00000371121 SYNMO15061 1565 aa15.05■□□□□ -0
SMARCA1-201ENST00000371121 CCDC146Q8IYE0 955 aa15.04■□□□□ -0
SMARCA1-201ENST00000371121 L1TD1Q5T7N2 865 aaKnown RBP15.04■□□□□ -0
SMARCA1-201ENST00000371121 CCDC141Q6ZP82 1450 aa15.04■□□□□ -0
SMARCA1-201ENST00000371121 MCM4P33991 863 aa15.03■□□□□ -0
SMARCA1-201ENST00000371121 RRP9O43818 475 aaKnown RBP15.03■□□□□ -0
SMARCA1-201ENST00000371121 DDIT3P35638 169 aa15.03■□□□□ -0
SMARCA1-201ENST00000371121 PANK1Q8TE04 598 aa15.03■□□□□ -0
SMARCA1-201ENST00000371121 CDC42BPBQ9Y5S2 1711 aa15.03■□□□□ -0
SMARCA1-201ENST00000371121 GZF1Q9H116 711 aaPredicted RBP15.03■□□□□ -0
SMARCA1-201ENST00000371121 PCDHB15Q9Y5E8 787 aa15.03■□□□□ -0
SMARCA1-201ENST00000371121 PIK3C2GO75747 1445 aa15.02■□□□□ -0
SMARCA1-201ENST00000371121 MADDQ8WXG6 1647 aa15.02■□□□□ -0
SMARCA1-201ENST00000371121 EIF2AK4Q9P2K8 1649 aaKnown RBP15.02■□□□□ -0
SMARCA1-201ENST00000371121 CEP152O94986 1710 aa15.02■□□□□ -0
SMARCA1-201ENST00000371121 ABCA8O94911 1581 aa15.02□□□□□ -0.01
SMARCA1-201ENST00000371121 ARHGEF5Q12774 1597 aa15.02□□□□□ -0.01
SMARCA1-201ENST00000371121 NAP1L5Q96NT1 182 aaPredicted RBP15.02□□□□□ -0.01
SMARCA1-201ENST00000371121 SAMD9LQ8IVG5 1584 aa15.01□□□□□ -0.01
SMARCA1-201ENST00000371121 RLBP1P12271 317 aa15.01□□□□□ -0.01
SMARCA1-201ENST00000371121 HSP90AA2PQ14568 343 aaPredicted RBP15.01□□□□□ -0.01
SMARCA1-201ENST00000371121 DNAJC5BQ9UF47 199 aa15.01□□□□□ -0.01
SMARCA1-201ENST00000371121 GAS2L3Q86XJ1 694 aa15.01□□□□□ -0.01
SMARCA1-201ENST00000371121 NCOA3Q9Y6Q9 1424 aa15.01□□□□□ -0.01
SMARCA1-201ENST00000371121 GOLGA6L3A6NEY3 463 aa15□□□□□ -0.01
SMARCA1-201ENST00000371121 SPRYD3Q8NCJ5 442 aa15□□□□□ -0.01
SMARCA1-201ENST00000371121 PNNQ9H307 717 aaKnown RBP15□□□□□ -0.01
SMARCA1-201ENST00000371121 CLUAP1Q96AJ1 413 aa15□□□□□ -0.01
SMARCA1-201ENST00000371121 COG6Q9Y2V7 657 aa14.99□□□□□ -0.01
SMARCA1-201ENST00000371121 ASXL1Q8IXJ9 1541 aa14.99□□□□□ -0.01
SMARCA1-201ENST00000371121 IQGAP3Q86VI3 1631 aa14.99□□□□□ -0.01
SMARCA1-201ENST00000371121 RGL3Q3MIN7 710 aa14.99□□□□□ -0.01
SMARCA1-201ENST00000371121 APAF1O14727 1248 aa14.98□□□□□ -0.01
SMARCA1-201ENST00000371121 CCDC144AA2RUR9 1427 aa14.98□□□□□ -0.01
SMARCA1-201ENST00000371121 MAPK8IP3Q9UPT6 1336 aa14.97□□□□□ -0.01
SMARCA1-201ENST00000371121 TRAK2O60296 914 aa14.96□□□□□ -0.01
SMARCA1-201ENST00000371121 ZMYM3Q14202 1370 aa14.95□□□□□ -0.02
SMARCA1-201ENST00000371121 HSP90AA1P07900 732 aaKnown RBP14.95□□□□□ -0.02
SMARCA1-201ENST00000371121 PDE3AQ14432 1141 aa14.95□□□□□ -0.02
SMARCA1-201ENST00000371121 GOLGA6L2Q8N9W4 650 aaPredicted RBP14.95□□□□□ -0.02
SMARCA1-201ENST00000371121 GRPEL1Q9HAV7 217 aa14.95□□□□□ -0.02
SMARCA1-201ENST00000371121 IQSEC2Q5JU85 1478 aa14.95□□□□□ -0.02
SMARCA1-201ENST00000371121 ESPNB1AK53 854 aa14.94□□□□□ -0.02
SMARCA1-201ENST00000371121 BECN1Q14457 450 aa14.94□□□□□ -0.02
SMARCA1-201ENST00000371121 NUP160Q12769 1436 aa14.94□□□□□ -0.02
SMARCA1-201ENST00000371121 ATP10AO60312 1499 aa14.93□□□□□ -0.02
SMARCA1-201ENST00000371121 SPHKAPQ2M3C7 1700 aa14.93□□□□□ -0.02
SMARCA1-201ENST00000371121 HNRNPMP52272 730 aaKnown RBP eCLIP14.93□□□□□ -0.022e-6■■■■□ 21.2
SMARCA1-201ENST00000371121 PRDM4Q9UKN5 801 aa14.93□□□□□ -0.02
SMARCA1-201ENST00000371121 PDZRN3Q9UPQ7 1066 aa14.93□□□□□ -0.02
SMARCA1-201ENST00000371121 CGNL1Q0VF96 1302 aa14.93□□□□□ -0.02
SMARCA1-201ENST00000371121 TMF1P82094 1093 aa14.92□□□□□ -0.02
SMARCA1-201ENST00000371121 WDR43Q15061 677 aaKnown RBP eCLIP14.92□□□□□ -0.022e-6■■■■■ 28
SMARCA1-201ENST00000371121 GRIN2AQ12879 1464 aa14.92□□□□□ -0.02
SMARCA1-201ENST00000371121 MRE11P49959 708 aa14.91□□□□□ -0.02
SMARCA1-201ENST00000371121 MAGI1Q96QZ7 1491 aaPredicted RBP14.91□□□□□ -0.02
SMARCA1-201ENST00000371121 PREX2Q70Z35 1606 aa14.91□□□□□ -0.02
SMARCA1-201ENST00000371121 ATP10BO94823 1461 aa14.91□□□□□ -0.02
SMARCA1-201ENST00000371121 E9PSI1 815 aa14.9□□□□□ -0.02
SMARCA1-201ENST00000371121 WWC1Q8IX03 1113 aa14.9□□□□□ -0.02
SMARCA1-201ENST00000371121 NPC1L1Q9UHC9 1359 aa14.9□□□□□ -0.02
SMARCA1-201ENST00000371121 RARSP54136 660 aaKnown RBP14.89□□□□□ -0.03
SMARCA1-201ENST00000371121 RIPK4P57078 832 aa14.89□□□□□ -0.03
SMARCA1-201ENST00000371121 GLIPR1L2Q4G1C9 344 aa14.89□□□□□ -0.03
SMARCA1-201ENST00000371121 KDM5AP29375 1690 aaKnown RBP14.89□□□□□ -0.03
SMARCA1-201ENST00000371121 PHF23Q9BUL5 403 aaPredicted RBP14.88□□□□□ -0.03
SMARCA1-201ENST00000371121 CARD14Q9BXL6 1004 aa14.88□□□□□ -0.03
SMARCA1-201ENST00000371121 AK9Q5TCS8 1911 aa14.88□□□□□ -0.03
SMARCA1-201ENST00000371121 MAST1Q9Y2H9 1570 aa14.88□□□□□ -0.03
SMARCA1-201ENST00000371121 CENPJQ9HC77 1338 aaPredicted RBP14.88□□□□□ -0.03
SMARCA1-201ENST00000371121 NINLQ9Y2I6 1382 aa14.87□□□□□ -0.03
SMARCA1-201ENST00000371121 KIF2CQ99661 725 aa14.86□□□□□ -0.03
SMARCA1-201ENST00000371121 KNSTRNQ9Y448 316 aa14.86□□□□□ -0.03
SMARCA1-201ENST00000371121 CHMP5Q9NZZ3 219 aa14.86□□□□□ -0.03
SMARCA1-201ENST00000371121 SYCP2Q9BX26 1530 aa14.86□□□□□ -0.03
SMARCA1-201ENST00000371121 CD2BP2O95400 341 aaKnown RBP14.85□□□□□ -0.03
SMARCA1-201ENST00000371121 SCAPERQ9BY12 1400 aa14.85□□□□□ -0.03
SMARCA1-201ENST00000371121 C22orf23Q9BZE7 217 aa14.85□□□□□ -0.03
SMARCA1-201ENST00000371121 TNPO1Q92973 898 aaKnown RBP14.84□□□□□ -0.03
SMARCA1-201ENST00000371121 MYH16Q9H6N6 1097 aa14.84□□□□□ -0.03
SMARCA1-201ENST00000371121 EIF2AK3Q9NZJ5 1116 aaKnown RBP14.84□□□□□ -0.03
SMARCA1-201ENST00000371121 ERVK-7P63135 1459 aa14.84□□□□□ -0.03
SMARCA1-201ENST00000371121 BCL2L13Q9BXK5 485 aa14.83□□□□□ -0.03
SMARCA1-201ENST00000371121 DUOX2Q9NRD8 1548 aa14.83□□□□□ -0.04
SMARCA1-201ENST00000371121 TTC37Q6PGP7 1564 aa14.83□□□□□ -0.04
SMARCA1-201ENST00000371121 PDCL3Q9H2J4 239 aa14.82□□□□□ -0.04
SMARCA1-201ENST00000371121 CLTCL1P53675 1640 aa14.81□□□□□ -0.04
SMARCA1-201ENST00000371121 SCAF11Q99590 1463 aaKnown RBP14.81□□□□□ -0.04
Retrieved 100 of 20,778 RNA–protein pairs in 61.3 ms