RNA–Protein interactions for RNA: ENST00000370542.1

LMO4-201, Transcript of LIM domain only 4, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene LMO4, Length 1,260 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LMO4-201ENST00000370542 TET3O43151 1660 aa22.65■■□□□ 1.22
LMO4-201ENST00000370542 ADGRB3O60242 1522 aa22.63■■□□□ 1.21
LMO4-201ENST00000370542 STAG3Q9UJ98 1225 aa22.61■■□□□ 1.21
LMO4-201ENST00000370542 GCC2Q8IWJ2 1684 aa22.59■■□□□ 1.21
LMO4-201ENST00000370542 ZEB1P37275 1124 aaPredicted RBP22.59■■□□□ 1.21
LMO4-201ENST00000370542 XIRP1Q702N8 1843 aaKnown RBP22.59■■□□□ 1.21
LMO4-201ENST00000370542 ZFYVE9O95405 1425 aa22.57■■□□□ 1.2
LMO4-201ENST00000370542 IQGAP3Q86VI3 1631 aa22.56■■□□□ 1.2
LMO4-201ENST00000370542 TMEM131LA2VDJ0 1609 aa22.54■■□□□ 1.2
LMO4-201ENST00000370542 KCNA6P17658 529 aa22.54■■□□□ 1.2
LMO4-201ENST00000370542 E9PCH4 1651 aa22.53■■□□□ 1.2
LMO4-201ENST00000370542 ROBO1Q9Y6N7 1651 aa22.52■■□□□ 1.2
LMO4-201ENST00000370542 RRBP1Q9P2E9 1410 aaKnown RBP22.5■■□□□ 1.19
LMO4-201ENST00000370542 NWD1Q149M9 1564 aa22.5■■□□□ 1.19
LMO4-201ENST00000370542 MYO5BQ9ULV0 1848 aa22.5■■□□□ 1.19
LMO4-201ENST00000370542 JCADQ9P266 1359 aa22.5■■□□□ 1.19
LMO4-201ENST00000370542 PLEKHG1Q9ULL1 1385 aa22.5■■□□□ 1.19
LMO4-201ENST00000370542 TRIM26Q12899 539 aaPredicted RBP22.49■■□□□ 1.19
LMO4-201ENST00000370542 SLC26A8Q96RN1 970 aa22.49■■□□□ 1.19
LMO4-201ENST00000370542 NUP155O75694 1391 aa22.49■■□□□ 1.19
LMO4-201ENST00000370542 TMEM94Q12767 1356 aa22.49■■□□□ 1.19
LMO4-201ENST00000370542 HDGFP51858 240 aaKnown RBP22.48■■□□□ 1.19
LMO4-201ENST00000370542 TRIM52Q96A61 297 aa22.48■■□□□ 1.19
LMO4-201ENST00000370542 RIMS2Q9UQ26 1411 aa22.48■■□□□ 1.19
LMO4-201ENST00000370542 ZNF772Q68DY9 489 aaPredicted RBP22.47■■□□□ 1.19
LMO4-201ENST00000370542 NKTRP30414 1462 aaKnown RBP22.47■■□□□ 1.19
LMO4-201ENST00000370542 PPARGC1BQ86YN6 1023 aaKnown RBP22.46■■□□□ 1.19
LMO4-201ENST00000370542 ITGAEP38570 1179 aa22.44■■□□□ 1.18
LMO4-201ENST00000370542 ABCF1Q8NE71 845 aaKnown RBP eCLIP22.44■■□□□ 1.18
LMO4-201ENST00000370542 TBX22Q9Y458 520 aa22.43■■□□□ 1.18
LMO4-201ENST00000370542 CHD2O14647 1828 aaKnown RBP22.42■■□□□ 1.18
LMO4-201ENST00000370542 LRP6O75581 1613 aa22.41■■□□□ 1.18
LMO4-201ENST00000370542 PROSER2Q86WR7 435 aaPredicted RBP22.4■■□□□ 1.18
LMO4-201ENST00000370542 CDK12Q9NYV4 1490 aaPredicted RBP22.4■■□□□ 1.18
LMO4-201ENST00000370542 ADAMTS13Q76LX8 1427 aa22.4■■□□□ 1.18
LMO4-201ENST00000370542 SPATA31A6Q5VVP1 1343 aa22.39■■□□□ 1.18
LMO4-201ENST00000370542 RXRBP28702 533 aa22.39■■□□□ 1.17
LMO4-201ENST00000370542 SLAIN2Q9P270 581 aa22.39■■□□□ 1.17
LMO4-201ENST00000370542 NAIPQ13075 1403 aa22.38■■□□□ 1.17
LMO4-201ENST00000370542 NCOA3Q9Y6Q9 1424 aa22.38■■□□□ 1.17
LMO4-201ENST00000370542 PIK3R4Q99570 1358 aa22.37■■□□□ 1.17
LMO4-201ENST00000370542 PPP1R15AO75807 674 aaPredicted RBP22.36■■□□□ 1.17
LMO4-201ENST00000370542 RBM33Q96EV2 1170 aaKnown RBP22.36■■□□□ 1.17
LMO4-201ENST00000370542 DIP2AQ14689 1571 aa22.36■■□□□ 1.17
LMO4-201ENST00000370542 PHLPP1O60346 1717 aa22.36■■□□□ 1.17
LMO4-201ENST00000370542 CHGAP10645 457 aaKnown RBP22.34■■□□□ 1.17
LMO4-201ENST00000370542 BCANQ96GW7 911 aa22.34■■□□□ 1.17
LMO4-201ENST00000370542 SPHKAPQ2M3C7 1700 aa22.34■■□□□ 1.17
LMO4-201ENST00000370542 COL16A1Q07092 1604 aaPredicted RBP22.33■■□□□ 1.17
LMO4-201ENST00000370542 MEX3CQ5U5Q3 659 aaKnown RBP22.33■■□□□ 1.17
LMO4-201ENST00000370542 MSH6P52701 1360 aa22.3■■□□□ 1.16
LMO4-201ENST00000370542 HFM1A2PYH4 1435 aa22.3■■□□□ 1.16
LMO4-201ENST00000370542 NUTM2DQ5VT03 806 aaPredicted RBP22.29■■□□□ 1.16
LMO4-201ENST00000370542 TRPM2O94759 1503 aa22.27■■□□□ 1.16
LMO4-201ENST00000370542 SETBP1Q9Y6X0 1596 aa22.27■■□□□ 1.16
LMO4-201ENST00000370542 NRXN3Q9Y4C0 1643 aa22.27■■□□□ 1.16
LMO4-201ENST00000370542 PTPRUQ92729 1446 aa22.26■■□□□ 1.15
LMO4-201ENST00000370542 CLTCL1P53675 1640 aa22.24■■□□□ 1.15
LMO4-201ENST00000370542 C19orf44Q9H6X5 657 aa22.22■■□□□ 1.15
LMO4-201ENST00000370542 AMOTL2Q9Y2J4 779 aa22.22■■□□□ 1.15
LMO4-201ENST00000370542 NEXMIFQ5QGS0 1516 aa22.21■■□□□ 1.15
LMO4-201ENST00000370542 XRN1Q8IZH2 1706 aaKnown RBP22.2■■□□□ 1.14
LMO4-201ENST00000370542 RGS12O14924 1447 aa22.19■■□□□ 1.14
LMO4-201ENST00000370542 SHPRHQ149N8 1683 aa22.19■■□□□ 1.14
LMO4-201ENST00000370542 SIPA1L2Q9P2F8 1722 aaPredicted RBP22.19■■□□□ 1.14
LMO4-201ENST00000370542 CADPS2Q86UW7 1296 aa22.18■■□□□ 1.14
LMO4-201ENST00000370542 ZRANB1Q9UGI0 708 aa22.18■■□□□ 1.14
LMO4-201ENST00000370542 AFF2P51816 1311 aa22.17■■□□□ 1.14
LMO4-201ENST00000370542 ZNF326Q5BKZ1 582 aaKnown RBP22.17■■□□□ 1.14
LMO4-201ENST00000370542 AHDC1Q5TGY3 1603 aaPredicted RBP22.17■■□□□ 1.14
LMO4-201ENST00000370542 DCCP43146 1447 aa22.16■■□□□ 1.14
LMO4-201ENST00000370542 METP08581 1390 aa22.16■■□□□ 1.14
LMO4-201ENST00000370542 KIF1BO60333 1816 aa22.16■■□□□ 1.14
LMO4-201ENST00000370542 RBM6P78332 1123 aaKnown RBP22.15■■□□□ 1.14
LMO4-201ENST00000370542 FOXD1Q16676 465 aa22.13■■□□□ 1.13
LMO4-201ENST00000370542 RPGRIP1LQ68CZ1 1315 aa22.12■■□□□ 1.13
LMO4-201ENST00000370542 NUTM2BA6NNL0 878 aaPredicted RBP22.12■■□□□ 1.13
LMO4-201ENST00000370542 NUTM2EB1AL46 878 aaPredicted RBP22.12■■□□□ 1.13
LMO4-201ENST00000370542 NUTM2AQ8IVF1 878 aaPredicted RBP22.12■■□□□ 1.13
LMO4-201ENST00000370542 SLC4A1APQ9BWU0 796 aaKnown RBP22.12■■□□□ 1.13
LMO4-201ENST00000370542 QTRT2Q9H974 415 aaKnown RBP22.12■■□□□ 1.13
LMO4-201ENST00000370542 ATF3P18847 181 aa22.11■■□□□ 1.13
LMO4-201ENST00000370542 MYT1Q01538 1121 aa22.11■■□□□ 1.13
LMO4-201ENST00000370542 VGFO15240 615 aaPredicted RBP22.1■■□□□ 1.13
LMO4-201ENST00000370542 C14orf37Q86TY3 774 aa22.1■■□□□ 1.13
LMO4-201ENST00000370542 PRAG1Q86YV5 1406 aa22.09■■□□□ 1.13
LMO4-201ENST00000370542 ATAD2Q6PL18 1390 aa22.08■■□□□ 1.12
LMO4-201ENST00000370542 BRINP3Q76B58 766 aa22.06■■□□□ 1.12
LMO4-201ENST00000370542 MST1RQ04912 1400 aa22.06■■□□□ 1.12
LMO4-201ENST00000370542 ADGRL3Q9HAR2 1447 aa22.06■■□□□ 1.12
LMO4-201ENST00000370542 PTCH1Q13635 1447 aa22.04■■□□□ 1.12
LMO4-201ENST00000370542 PPLO60437 1756 aa22.03■■□□□ 1.12
LMO4-201ENST00000370542 SETD5Q9C0A6 1442 aa22.02■■□□□ 1.12
LMO4-201ENST00000370542 ACIN1Q9UKV3 1341 aaKnown RBP22.02■■□□□ 1.12
LMO4-201ENST00000370542 NGLY1Q96IV0 654 aa22.01■■□□□ 1.11
LMO4-201ENST00000370542 C8orf37Q96NL8 207 aa22.01■■□□□ 1.11
LMO4-201ENST00000370542 MPHOSPH9Q99550 1183 aa22.01■■□□□ 1.11
LMO4-201ENST00000370542 ASXL1Q8IXJ9 1541 aa22.01■■□□□ 1.11
LMO4-201ENST00000370542 SPATA31E1Q6ZUB1 1445 aa22■■□□□ 1.11
LMO4-201ENST00000370542 NALCNQ8IZF0 1738 aa21.99■■□□□ 1.11
Retrieved 100 of 20,778 RNA–protein pairs in 39.5 ms