RNA–Protein interactions for RNA: ENST00000368531.6

TPM3-211, Transcript of tropomyosin 3, humanhuman

TSL 1 (best) BASIC

Gene TPM3, Length 1,115 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TPM3-211ENST00000368531 EID1Q9Y6B2 187 aa20.21■□□□□ 0.83
TPM3-211ENST00000368531 POLR1AO95602 1720 aaPredicted RBP20.21■□□□□ 0.83
TPM3-211ENST00000368531 LTKP29376 864 aa20.2■□□□□ 0.82
TPM3-211ENST00000368531 SLIT1O75093 1534 aa20.2■□□□□ 0.82
TPM3-211ENST00000368531 SPATA31E1Q6ZUB1 1445 aa20.19■□□□□ 0.82
TPM3-211ENST00000368531 ARHGAP23Q9P227 1491 aa20.19■□□□□ 0.82
TPM3-211ENST00000368531 PPP1R15AO75807 674 aaPredicted RBP20.19■□□□□ 0.82
TPM3-211ENST00000368531 HDGFP51858 240 aaKnown RBP20.17■□□□□ 0.82
TPM3-211ENST00000368531 BCANQ96GW7 911 aa20.17■□□□□ 0.82
TPM3-211ENST00000368531 SCAF11Q99590 1463 aaKnown RBP20.17■□□□□ 0.82
TPM3-211ENST00000368531 PPLO60437 1756 aa20.16■□□□□ 0.82
TPM3-211ENST00000368531 ZFYVE9O95405 1425 aa20.16■□□□□ 0.82
TPM3-211ENST00000368531 NEXMIFQ5QGS0 1516 aa20.16■□□□□ 0.82
TPM3-211ENST00000368531 ABCF1Q8NE71 845 aaKnown RBP eCLIP20.15■□□□□ 0.82
TPM3-211ENST00000368531 KDM2AQ9Y2K7 1162 aa20.14■□□□□ 0.81
TPM3-211ENST00000368531 NEURL4Q96JN8 1562 aa20.13■□□□□ 0.81
TPM3-211ENST00000368531 RPGRIP1LQ68CZ1 1315 aa20.13■□□□□ 0.81
TPM3-211ENST00000368531 IFT172Q9UG01 1749 aa20.13■□□□□ 0.81
TPM3-211ENST00000368531 DCAF11Q8TEB1 546 aa20.12■□□□□ 0.81
TPM3-211ENST00000368531 NPHP4O75161 1426 aaPredicted RBP20.11■□□□□ 0.81
TPM3-211ENST00000368531 IQGAP1P46940 1657 aa20.11■□□□□ 0.81
TPM3-211ENST00000368531 VGFO15240 615 aaPredicted RBP20.1■□□□□ 0.81
TPM3-211ENST00000368531 ADGRF5Q8IZF2 1346 aa20.08■□□□□ 0.81
TPM3-211ENST00000368531 CLSPNQ9HAW4 1339 aa20.08■□□□□ 0.81
TPM3-211ENST00000368531 L3MBTL2Q969R5 705 aa20.08■□□□□ 0.81
TPM3-211ENST00000368531 SLC26A8Q96RN1 970 aa20.08■□□□□ 0.81
TPM3-211ENST00000368531 MED14O60244 1454 aa20.07■□□□□ 0.8
TPM3-211ENST00000368531 DMRT2Q9Y5R5 561 aa20.07■□□□□ 0.8
TPM3-211ENST00000368531 TONSLQ96HA7 1378 aa20.07■□□□□ 0.8
TPM3-211ENST00000368531 PLEKHG1Q9ULL1 1385 aa20.07■□□□□ 0.8
TPM3-211ENST00000368531 NRXN3Q9Y4C0 1643 aa20.02■□□□□ 0.79
TPM3-211ENST00000368531 MYOM2P54296 1465 aa20.01■□□□□ 0.79
TPM3-211ENST00000368531 ADAMTS13Q76LX8 1427 aa20■□□□□ 0.79
TPM3-211ENST00000368531 SETBP1Q9Y6X0 1596 aa20■□□□□ 0.79
TPM3-211ENST00000368531 ALKQ9UM73 1620 aa19.98■□□□□ 0.79
TPM3-211ENST00000368531 CFAP70Q5T0N1 1121 aa19.97■□□□□ 0.79
TPM3-211ENST00000368531 STAC3Q96MF2 364 aa19.97■□□□□ 0.79
TPM3-211ENST00000368531 TBX22Q9Y458 520 aa19.97■□□□□ 0.79
TPM3-211ENST00000368531 PIK3C2GO75747 1445 aa19.96■□□□□ 0.79
TPM3-211ENST00000368531 NRXN1Q9ULB1 1477 aa19.96■□□□□ 0.79
TPM3-211ENST00000368531 ZNF335Q9H4Z2 1342 aaPredicted RBP19.95■□□□□ 0.78
TPM3-211ENST00000368531 SETD1AO15047 1707 aaKnown RBP19.94■□□□□ 0.78
TPM3-211ENST00000368531 DIP2AQ14689 1571 aa19.94■□□□□ 0.78
TPM3-211ENST00000368531 TMEM132EQ6IEE7 984 aa19.93■□□□□ 0.78
TPM3-211ENST00000368531 C14orf93Q9H972 538 aaKnown RBP19.93■□□□□ 0.78
TPM3-211ENST00000368531 METP08581 1390 aa19.93■□□□□ 0.78
TPM3-211ENST00000368531 PRAG1Q86YV5 1406 aa19.93■□□□□ 0.78
TPM3-211ENST00000368531 STRCP1A6NGW2 1772 aa19.92■□□□□ 0.78
TPM3-211ENST00000368531 CHD2O14647 1828 aaKnown RBP19.92■□□□□ 0.78
TPM3-211ENST00000368531 NBPF8Q3BBV2 869 aa19.91■□□□□ 0.78
TPM3-211ENST00000368531 LAMC1P11047 1609 aa19.91■□□□□ 0.78
TPM3-211ENST00000368531 STK26Q9P289 416 aa19.89■□□□□ 0.77
TPM3-211ENST00000368531 TIMELESSQ9UNS1 1208 aa19.89■□□□□ 0.77
TPM3-211ENST00000368531 PTPRUQ92729 1446 aa19.88■□□□□ 0.77
TPM3-211ENST00000368531 KCNA6P17658 529 aa19.88■□□□□ 0.77
TPM3-211ENST00000368531 AMOTL2Q9Y2J4 779 aa19.88■□□□□ 0.77
TPM3-211ENST00000368531 NBPF1Q3BBV0 1214 aa19.87■□□□□ 0.77
TPM3-211ENST00000368531 ASXL1Q8IXJ9 1541 aa19.86■□□□□ 0.77
TPM3-211ENST00000368531 KIAA1210Q9ULL0 1709 aa19.86■□□□□ 0.77
TPM3-211ENST00000368531 TRPM1Q7Z4N2 1603 aa19.86■□□□□ 0.77
TPM3-211ENST00000368531 PIK3R4Q99570 1358 aa19.85■□□□□ 0.77
TPM3-211ENST00000368531 RBM33Q96EV2 1170 aaKnown RBP19.85■□□□□ 0.77
TPM3-211ENST00000368531 NWD1Q149M9 1564 aa19.83■□□□□ 0.77
TPM3-211ENST00000368531 PROSER2Q86WR7 435 aaPredicted RBP19.83■□□□□ 0.77
TPM3-211ENST00000368531 LTBP4Q8N2S1 1624 aa19.83■□□□□ 0.76
TPM3-211ENST00000368531 XRN1Q8IZH2 1706 aaKnown RBP19.82■□□□□ 0.76
TPM3-211ENST00000368531 YTHDC2Q9H6S0 1430 aaKnown RBP19.82■□□□□ 0.76
TPM3-211ENST00000368531 TRAK1Q9UPV9 953 aa19.81■□□□□ 0.76
TPM3-211ENST00000368531 ADGRB1O14514 1584 aa19.81■□□□□ 0.76
TPM3-211ENST00000368531 ROCK2O75116 1388 aaKnown RBP19.81■□□□□ 0.76
TPM3-211ENST00000368531 LRPPRCP42704 1394 aaKnown RBP19.81■□□□□ 0.76
TPM3-211ENST00000368531 CPS1P31327 1500 aa19.8■□□□□ 0.76
TPM3-211ENST00000368531 NKTRP30414 1462 aaKnown RBP19.78■□□□□ 0.76
TPM3-211ENST00000368531 KNDC1Q76NI1 1749 aa19.77■□□□□ 0.76
TPM3-211ENST00000368531 ROBO2Q9HCK4 1378 aa19.77■□□□□ 0.76
TPM3-211ENST00000368531 LRRC7Q96NW7 1537 aa19.76■□□□□ 0.75
TPM3-211ENST00000368531 XIRP1Q702N8 1843 aaKnown RBP19.76■□□□□ 0.75
TPM3-211ENST00000368531 RALGAPBQ86X10 1494 aa19.76■□□□□ 0.75
TPM3-211ENST00000368531 ABCC11Q96J66 1382 aa19.76■□□□□ 0.75
TPM3-211ENST00000368531 WAPLQ7Z5K2 1190 aa19.76■□□□□ 0.75
TPM3-211ENST00000368531 C14orf37Q86TY3 774 aa19.76■□□□□ 0.75
TPM3-211ENST00000368531 TMEM94Q12767 1356 aa19.75■□□□□ 0.75
TPM3-211ENST00000368531 SAFB2Q14151 953 aaKnown RBP eCLIP19.75■□□□□ 0.75
TPM3-211ENST00000368531 CARD11Q9BXL7 1154 aa19.75■□□□□ 0.75
TPM3-211ENST00000368531 CERKQ8TCT0 537 aa19.74■□□□□ 0.75
TPM3-211ENST00000368531 POGKQ9P215 609 aa19.74■□□□□ 0.75
TPM3-211ENST00000368531 ARHGEF28Q8N1W1 1705 aaKnown RBP19.73■□□□□ 0.75
TPM3-211ENST00000368531 PLEKHH1Q9ULM0 1364 aa19.73■□□□□ 0.75
TPM3-211ENST00000368531 PRAM1Q96QH2 718 aa19.73■□□□□ 0.75
TPM3-211ENST00000368531 TECPR2O15040 1411 aa19.72■□□□□ 0.75
TPM3-211ENST00000368531 PTCH1Q13635 1447 aa19.71■□□□□ 0.75
TPM3-211ENST00000368531 DLC1Q96QB1 1528 aa19.7■□□□□ 0.74
TPM3-211ENST00000368531 GPRASP1Q5JY77 1395 aa19.7■□□□□ 0.74
TPM3-211ENST00000368531 NALCNQ8IZF0 1738 aa19.68■□□□□ 0.74
TPM3-211ENST00000368531 SIRT1Q96EB6 747 aa19.68■□□□□ 0.74
TPM3-211ENST00000368531 SIPA1L2Q9P2F8 1722 aaPredicted RBP19.68■□□□□ 0.74
TPM3-211ENST00000368531 FAM135BQ49AJ0 1406 aa19.68■□□□□ 0.74
TPM3-211ENST00000368531 MINK1Q8N4C8 1332 aaPredicted RBP19.66■□□□□ 0.74
TPM3-211ENST00000368531 MSH6P52701 1360 aa19.66■□□□□ 0.74
TPM3-211ENST00000368531 HIRIP3Q9BW71 556 aaPredicted RBP19.65■□□□□ 0.74
Retrieved 100 of 20,778 RNA–protein pairs in 49.1 ms