RNA–Protein interactions for RNA: ENST00000368530.6

TPM3-210, Transcript of tropomyosin 3, humanhuman

APPRIS P2 TSL 1 (best) BASIC

Gene TPM3, Length 1,523 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TPM3-210ENST00000368530 FAM135BQ49AJ0 1406 aa15.16■□□□□ 0.02
TPM3-210ENST00000368530 ADGRL2O95490 1459 aa15.16■□□□□ 0.02
TPM3-210ENST00000368530 SLC26A8Q96RN1 970 aa15.15■□□□□ 0.02
TPM3-210ENST00000368530 STAG3Q9UJ98 1225 aa15.15■□□□□ 0.02
TPM3-210ENST00000368530 TMEM94Q12767 1356 aa15.15■□□□□ 0.02
TPM3-210ENST00000368530 SLC52A1Q9NWF4 448 aa15.13■□□□□ 0.01
TPM3-210ENST00000368530 RBM33Q96EV2 1170 aaKnown RBP15.12■□□□□ 0.01
TPM3-210ENST00000368530 PROSER2Q86WR7 435 aaPredicted RBP15.11■□□□□ 0.01
TPM3-210ENST00000368530 ADGRB3O60242 1522 aa15.11■□□□□ 0.01
TPM3-210ENST00000368530 ANKRD50Q9ULJ7 1429 aa15.1■□□□□ 0.01
TPM3-210ENST00000368530 ZFYVE9O95405 1425 aa15.1■□□□□ 0.01
TPM3-210ENST00000368530 RPRD2Q5VT52 1461 aaKnown RBP15.09■□□□□ 0.01
TPM3-210ENST00000368530 NWD1Q149M9 1564 aa15.08■□□□□ 0
TPM3-210ENST00000368530 FAM50AQ14320 339 aaKnown RBP15.07■□□□□ 0
TPM3-210ENST00000368530 NKTRP30414 1462 aaKnown RBP15.07■□□□□ 0
TPM3-210ENST00000368530 NPM3O75607 178 aaKnown RBP15.07■□□□□ 0
TPM3-210ENST00000368530 PLEKHG1Q9ULL1 1385 aa15.06■□□□□ 0
TPM3-210ENST00000368530 POTEAQ6S8J7 498 aa15.05■□□□□ -0
TPM3-210ENST00000368530 RIMS2Q9UQ26 1411 aa15.04■□□□□ -0
TPM3-210ENST00000368530 SLAIN2Q9P270 581 aa15.04■□□□□ -0
TPM3-210ENST00000368530 ROBO1Q9Y6N7 1651 aa15.04■□□□□ -0
TPM3-210ENST00000368530 TMEM131LA2VDJ0 1609 aa15.04■□□□□ -0
TPM3-210ENST00000368530 TBX22Q9Y458 520 aa15.03■□□□□ -0
TPM3-210ENST00000368530 MSH6P52701 1360 aa15.02□□□□□ -0.01
TPM3-210ENST00000368530 BCANQ96GW7 911 aa15.02□□□□□ -0.01
TPM3-210ENST00000368530 ADAMTS13Q76LX8 1427 aa15.01□□□□□ -0.01
TPM3-210ENST00000368530 CHD2O14647 1828 aaKnown RBP15□□□□□ -0.01
TPM3-210ENST00000368530 HDGFP51858 240 aaKnown RBP15□□□□□ -0.01
TPM3-210ENST00000368530 UNC13BO14795 1591 aa15□□□□□ -0.01
TPM3-210ENST00000368530 MYO5BQ9ULV0 1848 aa14.99□□□□□ -0.01
TPM3-210ENST00000368530 ROCK1Q13464 1354 aa14.99□□□□□ -0.01
TPM3-210ENST00000368530 NCOA3Q9Y6Q9 1424 aa14.99□□□□□ -0.01
TPM3-210ENST00000368530 GCC2Q8IWJ2 1684 aa14.99□□□□□ -0.01
TPM3-210ENST00000368530 ABCF1Q8NE71 845 aaKnown RBP eCLIP14.98□□□□□ -0.01
TPM3-210ENST00000368530 E9PCH4 1651 aa14.97□□□□□ -0.01
TPM3-210ENST00000368530 PPP1R15AO75807 674 aaPredicted RBP14.97□□□□□ -0.01
TPM3-210ENST00000368530 NUTM2DQ5VT03 806 aaPredicted RBP14.97□□□□□ -0.01
TPM3-210ENST00000368530 HRCP23327 699 aa14.96□□□□□ -0.02
TPM3-210ENST00000368530 CHGAP10645 457 aaKnown RBP14.95□□□□□ -0.02
TPM3-210ENST00000368530 PIK3R4Q99570 1358 aa14.95□□□□□ -0.02
TPM3-210ENST00000368530 JCADQ9P266 1359 aa14.95□□□□□ -0.02
TPM3-210ENST00000368530 IQGAP3Q86VI3 1631 aa14.94□□□□□ -0.02
TPM3-210ENST00000368530 C19orf44Q9H6X5 657 aa14.94□□□□□ -0.02
TPM3-210ENST00000368530 PTPRUQ92729 1446 aa14.94□□□□□ -0.02
TPM3-210ENST00000368530 NUP155O75694 1391 aa14.93□□□□□ -0.02
TPM3-210ENST00000368530 COL16A1Q07092 1604 aaPredicted RBP14.93□□□□□ -0.02
TPM3-210ENST00000368530 PHLPP1O60346 1717 aa14.92□□□□□ -0.02
TPM3-210ENST00000368530 AMOTL2Q9Y2J4 779 aa14.92□□□□□ -0.02
TPM3-210ENST00000368530 DIP2AQ14689 1571 aa14.91□□□□□ -0.02
TPM3-210ENST00000368530 CADPS2Q86UW7 1296 aa14.91□□□□□ -0.02
TPM3-210ENST00000368530 LRP6O75581 1613 aa14.9□□□□□ -0.02
TPM3-210ENST00000368530 SIPA1L2Q9P2F8 1722 aaPredicted RBP14.9□□□□□ -0.02
TPM3-210ENST00000368530 SPATA31A6Q5VVP1 1343 aa14.88□□□□□ -0.03
TPM3-210ENST00000368530 BRINP3Q76B58 766 aa14.88□□□□□ -0.03
TPM3-210ENST00000368530 AHDC1Q5TGY3 1603 aaPredicted RBP14.88□□□□□ -0.03
TPM3-210ENST00000368530 ATF3P18847 181 aa14.87□□□□□ -0.03
TPM3-210ENST00000368530 C14orf37Q86TY3 774 aa14.87□□□□□ -0.03
TPM3-210ENST00000368530 NRXN3Q9Y4C0 1643 aa14.87□□□□□ -0.03
TPM3-210ENST00000368530 TRPM2O94759 1503 aa14.87□□□□□ -0.03
TPM3-210ENST00000368530 ITGAEP38570 1179 aa14.87□□□□□ -0.03
TPM3-210ENST00000368530 METP08581 1390 aa14.85□□□□□ -0.03
TPM3-210ENST00000368530 SETBP1Q9Y6X0 1596 aa14.85□□□□□ -0.03
TPM3-210ENST00000368530 DCCP43146 1447 aa14.84□□□□□ -0.03
TPM3-210ENST00000368530 RRBP1Q9P2E9 1410 aaKnown RBP14.84□□□□□ -0.03
TPM3-210ENST00000368530 RNF216Q9NWF9 866 aaPredicted RBP14.84□□□□□ -0.03
TPM3-210ENST00000368530 XRN1Q8IZH2 1706 aaKnown RBP14.84□□□□□ -0.03
TPM3-210ENST00000368530 SHPRHQ149N8 1683 aa14.82□□□□□ -0.04
TPM3-210ENST00000368530 MST1RQ04912 1400 aa14.82□□□□□ -0.04
TPM3-210ENST00000368530 ZNF772Q68DY9 489 aaPredicted RBP14.82□□□□□ -0.04
TPM3-210ENST00000368530 SETD1AO15047 1707 aaKnown RBP14.81□□□□□ -0.04
TPM3-210ENST00000368530 SETD5Q9C0A6 1442 aa14.8□□□□□ -0.04
TPM3-210ENST00000368530 SPHKAPQ2M3C7 1700 aa14.8□□□□□ -0.04
TPM3-210ENST00000368530 ZNF326Q5BKZ1 582 aaKnown RBP14.8□□□□□ -0.04
TPM3-210ENST00000368530 ASXL1Q8IXJ9 1541 aa14.8□□□□□ -0.04
TPM3-210ENST00000368530 NEXMIFQ5QGS0 1516 aa14.79□□□□□ -0.04
TPM3-210ENST00000368530 MEX3CQ5U5Q3 659 aaKnown RBP14.78□□□□□ -0.04
TPM3-210ENST00000368530 UPF1Q92900 1129 aaKnown RBP eCLIP14.78□□□□□ -0.04
TPM3-210ENST00000368530 NAIPQ13075 1403 aa14.77□□□□□ -0.04
TPM3-210ENST00000368530 DDX17Q92841 729 aaKnown RBP14.77□□□□□ -0.04
TPM3-210ENST00000368530 CLTCL1P53675 1640 aa14.77□□□□□ -0.04
TPM3-210ENST00000368530 ADGRL3Q9HAR2 1447 aa14.77□□□□□ -0.05
TPM3-210ENST00000368530 NUTM2BA6NNL0 878 aaPredicted RBP14.76□□□□□ -0.05
TPM3-210ENST00000368530 NUTM2EB1AL46 878 aaPredicted RBP14.76□□□□□ -0.05
TPM3-210ENST00000368530 NUTM2AQ8IVF1 878 aaPredicted RBP14.76□□□□□ -0.05
TPM3-210ENST00000368530 CCER1Q8TC90 406 aaPredicted RBP14.76□□□□□ -0.05
TPM3-210ENST00000368530 HOXD11P31277 338 aaPredicted RBP14.76□□□□□ -0.05
TPM3-210ENST00000368530 TRIM52Q96A61 297 aa14.76□□□□□ -0.05
TPM3-210ENST00000368530 LRRC59Q96AG4 307 aaKnown RBP14.76□□□□□ -0.05
TPM3-210ENST00000368530 NHSL1Q5SYE7 1610 aa14.75□□□□□ -0.05
TPM3-210ENST00000368530 RXRBP28702 533 aa14.75□□□□□ -0.05
TPM3-210ENST00000368530 AFF2P51816 1311 aa14.74□□□□□ -0.05
TPM3-210ENST00000368530 PNPLA6Q8IY17 1366 aa14.74□□□□□ -0.05
TPM3-210ENST00000368530 CDK12Q9NYV4 1490 aaPredicted RBP14.73□□□□□ -0.05
TPM3-210ENST00000368530 ROBO2Q9HCK4 1378 aa14.72□□□□□ -0.05
TPM3-210ENST00000368530 C1orf167Q5SNV9 1468 aa14.72□□□□□ -0.05
TPM3-210ENST00000368530 NALCNQ8IZF0 1738 aa14.72□□□□□ -0.05
TPM3-210ENST00000368530 PRAG1Q86YV5 1406 aa14.71□□□□□ -0.05
TPM3-210ENST00000368530 PTCH1Q13635 1447 aa14.71□□□□□ -0.06
TPM3-210ENST00000368530 VGFO15240 615 aaPredicted RBP14.71□□□□□ -0.06
TPM3-210ENST00000368530 ZEB1P37275 1124 aaPredicted RBP14.71□□□□□ -0.06
Retrieved 100 of 20,778 RNA–protein pairs in 42.2 ms