RNA–Protein interactions for RNA: ENST00000367253.8

SYNE1-206, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

TSL 5 BASIC

Gene SYNE1, Length 5,189 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-206ENST00000367253 LMOD3Q0VAK6 560 aa10.71□□□□□ -0.7
SYNE1-206ENST00000367253 MORC1Q86VD1 984 aa10.71□□□□□ -0.7
SYNE1-206ENST00000367253 MAP7D2Q96T17 732 aa10.71□□□□□ -0.7
SYNE1-206ENST00000367253 FAM13BQ9NYF5 915 aa10.71□□□□□ -0.7
SYNE1-206ENST00000367253 FHOD3Q2V2M9 1422 aa10.7□□□□□ -0.7
SYNE1-206ENST00000367253 IL27Q8NEV9 243 aa10.7□□□□□ -0.7
SYNE1-206ENST00000367253 DRC7Q8IY82 874 aa10.7□□□□□ -0.7
SYNE1-206ENST00000367253 GOLGA6L4A6NEF3 574 aa10.7□□□□□ -0.7
SYNE1-206ENST00000367253 GPATCH3Q96I76 525 aa10.7□□□□□ -0.7
SYNE1-206ENST00000367253 EIF3AQ14152 1382 aaKnown RBP10.69□□□□□ -0.7
SYNE1-206ENST00000367253 TEFQ10587 303 aa10.69□□□□□ -0.7
SYNE1-206ENST00000367253 SUPT16HQ9Y5B9 1047 aaKnown RBP10.69□□□□□ -0.7
SYNE1-206ENST00000367253 LTV1Q96GA3 475 aaPredicted RBP10.68□□□□□ -0.7
SYNE1-206ENST00000367253 CEP89Q96ST8 783 aa10.68□□□□□ -0.7
SYNE1-206ENST00000367253 CCDC43Q96MW1 224 aaKnown RBP10.68□□□□□ -0.7
SYNE1-206ENST00000367253 HSCBQ8IWL3 235 aa10.67□□□□□ -0.7
SYNE1-206ENST00000367253 TNNT1P13805 278 aa10.66□□□□□ -0.7
SYNE1-206ENST00000367253 NEXNQ0ZGT2 675 aa10.66□□□□□ -0.7
SYNE1-206ENST00000367253 CNPY4Q8N129 248 aa10.66□□□□□ -0.7
SYNE1-206ENST00000367253 CUL7Q14999 1698 aa10.66□□□□□ -0.7
SYNE1-206ENST00000367253 NOC3LQ8WTT2 800 aaKnown RBP10.66□□□□□ -0.7
SYNE1-206ENST00000367253 PRDM2Q13029 1718 aa10.66□□□□□ -0.7
SYNE1-206ENST00000367253 RGS3P49796 1198 aa10.66□□□□□ -0.7
SYNE1-206ENST00000367253 ZNF592Q92610 1267 aa10.66□□□□□ -0.7
SYNE1-206ENST00000367253 EFCAB5A4FU69 1503 aa10.65□□□□□ -0.7
SYNE1-206ENST00000367253 BCCIPQ9P287 314 aaKnown RBP eCLIP10.65□□□□□ -0.7
SYNE1-206ENST00000367253 KANK4Q5T7N3 995 aaPredicted RBP10.65□□□□□ -0.7
SYNE1-206ENST00000367253 CHMP4CQ96CF2 233 aa10.65□□□□□ -0.7
SYNE1-206ENST00000367253 UACAQ9BZF9 1416 aa10.65□□□□□ -0.71
SYNE1-206ENST00000367253 TMOD2Q9NZR1 351 aa10.64□□□□□ -0.71
SYNE1-206ENST00000367253 ARHGAP35Q9NRY4 1499 aa10.64□□□□□ -0.71
SYNE1-206ENST00000367253 SPDYE4A6NLX3 237 aa10.64□□□□□ -0.71
SYNE1-206ENST00000367253 CLGNO14967 610 aa10.64□□□□□ -0.71
SYNE1-206ENST00000367253 MCCP23508 829 aa10.64□□□□□ -0.71
SYNE1-206ENST00000367253 TXNDC2Q86VQ3 553 aa10.64□□□□□ -0.71
SYNE1-206ENST00000367253 NLRP2Q9NX02 1062 aa10.64□□□□□ -0.71
SYNE1-206ENST00000367253 MAGI1Q96QZ7 1491 aaPredicted RBP10.63□□□□□ -0.71
SYNE1-206ENST00000367253 RAD21O60216 631 aa10.63□□□□□ -0.71
SYNE1-206ENST00000367253 TTLL12Q14166 644 aaPredicted RBP10.63□□□□□ -0.71
SYNE1-206ENST00000367253 TSHZ2Q9NRE2 1034 aa10.63□□□□□ -0.71
SYNE1-206ENST00000367253 ANKRD30AQ9BXX3 1397 aa10.63□□□□□ -0.71
SYNE1-206ENST00000367253 NUTM2FA1L443 756 aa10.62□□□□□ -0.71
SYNE1-206ENST00000367253 RFX1P22670 979 aa10.62□□□□□ -0.71
SYNE1-206ENST00000367253 KIAA1211Q6ZU35 1233 aa10.62□□□□□ -0.71
SYNE1-206ENST00000367253 PAF1Q8N7H5 531 aa10.62□□□□□ -0.71
SYNE1-206ENST00000367253 COG3Q96JB2 828 aa10.62□□□□□ -0.71
SYNE1-206ENST00000367253 SNAPC4Q5SXM2 1469 aa10.62□□□□□ -0.71
SYNE1-206ENST00000367253 KCNA4P22459 653 aa10.62□□□□□ -0.71
SYNE1-206ENST00000367253 GBP4Q96PP9 640 aa10.61□□□□□ -0.71
SYNE1-206ENST00000367253 TOMM22Q9NS69 142 aa10.61□□□□□ -0.71
SYNE1-206ENST00000367253 KIAA0586Q9BVV6 1533 aa10.61□□□□□ -0.71
SYNE1-206ENST00000367253 IPO8O15397 1037 aaKnown RBP10.6□□□□□ -0.71
SYNE1-206ENST00000367253 CCDC18Q5T9S5 1454 aa10.6□□□□□ -0.71
SYNE1-206ENST00000367253 DDX58O95786 925 aaKnown RBP10.6□□□□□ -0.71
SYNE1-206ENST00000367253 RASSF8Q8NHQ8 419 aa10.6□□□□□ -0.71
SYNE1-206ENST00000367253 ARAP1Q96P48 1450 aa10.6□□□□□ -0.71
SYNE1-206ENST00000367253 CCDC66A2RUB6 948 aa10.6□□□□□ -0.71
SYNE1-206ENST00000367253 CASKIN1Q8WXD9 1431 aa10.6□□□□□ -0.71
SYNE1-206ENST00000367253 PRDM11Q9NQV5 511 aa10.6□□□□□ -0.71
SYNE1-206ENST00000367253 STRN4Q9NRL3 753 aa10.6□□□□□ -0.71
SYNE1-206ENST00000367253 ARID4AP29374 1257 aaPredicted RBP10.59□□□□□ -0.71
SYNE1-206ENST00000367253 CLEC11AQ9Y240 323 aa10.59□□□□□ -0.71
SYNE1-206ENST00000367253 SYNJ2O15056 1496 aa10.59□□□□□ -0.71
SYNE1-206ENST00000367253 ARHGEF6Q15052 776 aa10.58□□□□□ -0.72
SYNE1-206ENST00000367253 PAIP2Q9BPZ3 127 aaKnown RBP10.58□□□□□ -0.72
SYNE1-206ENST00000367253 PPP6R1Q9UPN7 881 aa10.58□□□□□ -0.72
SYNE1-206ENST00000367253 ZBTB12Q9Y330 459 aaPredicted RBP10.58□□□□□ -0.72
SYNE1-206ENST00000367253 NF2P35240 595 aa10.57□□□□□ -0.72
SYNE1-206ENST00000367253 GTF3C5Q9Y5Q8 519 aaPredicted RBP10.57□□□□□ -0.72
SYNE1-206ENST00000367253 DCAF11Q8TEB1 546 aa10.57□□□□□ -0.72
SYNE1-206ENST00000367253 SETD5Q9C0A6 1442 aa10.57□□□□□ -0.72
SYNE1-206ENST00000367253 B4GALNT3Q6L9W6 998 aa10.57□□□□□ -0.72
SYNE1-206ENST00000367253 AKAP17AQ02040 695 aaKnown RBP10.57□□□□□ -0.72
SYNE1-206ENST00000367253 HTATSF1O43719 755 aaKnown RBP10.56□□□□□ -0.72
SYNE1-206ENST00000367253 HSP90AB3PQ58FF7 597 aa10.56□□□□□ -0.72
SYNE1-206ENST00000367253 ESCO1Q5FWF5 840 aa10.56□□□□□ -0.72
SYNE1-206ENST00000367253 GPATCH11Q8N954 259 aa10.56□□□□□ -0.72
SYNE1-206ENST00000367253 SYAP1Q96A49 352 aaPredicted RBP10.56□□□□□ -0.72
SYNE1-206ENST00000367253 FYCO1Q9BQS8 1478 aa10.56□□□□□ -0.72
SYNE1-206ENST00000367253 GZF1Q9H116 711 aaPredicted RBP10.56□□□□□ -0.72
SYNE1-206ENST00000367253 DHX16O60231 1041 aaKnown RBP10.56□□□□□ -0.72
SYNE1-206ENST00000367253 WDR62O43379 1518 aa10.55□□□□□ -0.72
SYNE1-206ENST00000367253 TOM1L2Q6ZVM7 507 aa10.55□□□□□ -0.72
SYNE1-206ENST00000367253 ZNF608Q9ULD9 1512 aaPredicted RBP10.55□□□□□ -0.72
SYNE1-206ENST00000367253 BAG6P46379 1132 aa10.55□□□□□ -0.72
SYNE1-206ENST00000367253 HMMRO75330 724 aa10.55□□□□□ -0.72
SYNE1-206ENST00000367253 AIDAQ96BJ3 306 aa10.55□□□□□ -0.72
SYNE1-206ENST00000367253 GRIN2AQ12879 1464 aa10.55□□□□□ -0.72
SYNE1-206ENST00000367253 SYNE3Q6ZMZ3 975 aa10.55□□□□□ -0.72
SYNE1-206ENST00000367253 KIF21AQ7Z4S6 1674 aa10.54□□□□□ -0.72
SYNE1-206ENST00000367253 NOP2P46087 812 aaKnown RBP10.54□□□□□ -0.72
SYNE1-206ENST00000367253 NOM1Q5C9Z4 860 aaKnown RBP10.54□□□□□ -0.72
SYNE1-206ENST00000367253 CRBNQ96SW2 442 aa10.54□□□□□ -0.72
SYNE1-206ENST00000367253 LRPPRCP42704 1394 aaKnown RBP10.54□□□□□ -0.72
SYNE1-206ENST00000367253 IQGAP2Q13576 1575 aa10.53□□□□□ -0.72
SYNE1-206ENST00000367253 ZHX1Q9UKY1 873 aaPredicted RBP10.53□□□□□ -0.72
SYNE1-206ENST00000367253 KIF3AQ9Y496 699 aa10.53□□□□□ -0.72
SYNE1-206ENST00000367253 TATP17735 454 aaPredicted RBP10.53□□□□□ -0.72
SYNE1-206ENST00000367253 KIF6Q6ZMV9 814 aa10.53□□□□□ -0.72
SYNE1-206ENST00000367253 DNAI2Q9GZS0 605 aa10.53□□□□□ -0.72
Retrieved 100 of 20,778 RNA–protein pairs in 15.5 ms