RNA–Protein interactions for RNA: ENST00000360535.8

CLIP3-201, Transcript of CAP-Gly domain containing linker protein 3, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CLIP3, Length 3,370 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP3-201ENST00000360535 PRDM15P57071 1507 aaPredicted RBP15.8■□□□□ 0.12
CLIP3-201ENST00000360535 MYO5CQ9NQX4 1742 aa15.8■□□□□ 0.12
CLIP3-201ENST00000360535 DMRT2Q9Y5R5 561 aa15.8■□□□□ 0.12
CLIP3-201ENST00000360535 DDRGK1Q96HY6 314 aa15.79■□□□□ 0.12
CLIP3-201ENST00000360535 CENPQQ7L2Z9 268 aaPredicted RBP15.79■□□□□ 0.12
CLIP3-201ENST00000360535 ERCC6L2Q5T890 1561 aa15.79■□□□□ 0.12
CLIP3-201ENST00000360535 PPM1GO15355 546 aaPredicted RBP15.79■□□□□ 0.12
CLIP3-201ENST00000360535 SLFN5Q08AF3 891 aa15.78■□□□□ 0.12
CLIP3-201ENST00000360535 ZMYM4Q5VZL5 1548 aa15.78■□□□□ 0.12
CLIP3-201ENST00000360535 WDR7Q9Y4E6 1490 aa15.77■□□□□ 0.11
CLIP3-201ENST00000360535 BCL2L13Q9BXK5 485 aa15.76■□□□□ 0.11
CLIP3-201ENST00000360535 NUTM2DQ5VT03 806 aaPredicted RBP15.76■□□□□ 0.11
CLIP3-201ENST00000360535 COG6Q9Y2V7 657 aa15.76■□□□□ 0.11
CLIP3-201ENST00000360535 FAM161AQ3B820 660 aa15.76■□□□□ 0.11
CLIP3-201ENST00000360535 PANK1Q8TE04 598 aa15.76■□□□□ 0.11
CLIP3-201ENST00000360535 ANO8Q9HCE9 1232 aaPredicted RBP15.76■□□□□ 0.11
CLIP3-201ENST00000360535 TRAK1Q9UPV9 953 aa15.76■□□□□ 0.11
CLIP3-201ENST00000360535 KDM2BQ8NHM5 1336 aa15.75■□□□□ 0.11
CLIP3-201ENST00000360535 DUOX2Q9NRD8 1548 aa15.75■□□□□ 0.11
CLIP3-201ENST00000360535 ADGRF5Q8IZF2 1346 aa15.74■□□□□ 0.11
CLIP3-201ENST00000360535 NFKBIBQ15653 356 aa15.74■□□□□ 0.11
CLIP3-201ENST00000360535 UNC13BO14795 1591 aa15.73■□□□□ 0.11
CLIP3-201ENST00000360535 CARD14Q9BXL6 1004 aa15.73■□□□□ 0.11
CLIP3-201ENST00000360535 IGHDP01880 384 aa15.72■□□□□ 0.11
CLIP3-201ENST00000360535 C8orf34Q49A92 452 aa15.72■□□□□ 0.11
CLIP3-201ENST00000360535 CLUAP1Q96AJ1 413 aa15.72■□□□□ 0.11
CLIP3-201ENST00000360535 EIF2AK4Q9P2K8 1649 aaKnown RBP15.72■□□□□ 0.11
CLIP3-201ENST00000360535 IQGAP3Q86VI3 1631 aa15.72■□□□□ 0.11
CLIP3-201ENST00000360535 SAFB2Q14151 953 aaKnown RBP eCLIP15.71■□□□□ 0.11
CLIP3-201ENST00000360535 TMEM132EQ6IEE7 984 aa15.71■□□□□ 0.11
CLIP3-201ENST00000360535 MAST1Q9Y2H9 1570 aa15.71■□□□□ 0.11
CLIP3-201ENST00000360535 MORC1Q86VD1 984 aa15.71■□□□□ 0.11
CLIP3-201ENST00000360535 SLC12A5Q9H2X9 1139 aa15.7■□□□□ 0.1
CLIP3-201ENST00000360535 ZNF521Q96K83 1311 aa15.7■□□□□ 0.1
CLIP3-201ENST00000360535 PLCH2O75038 1416 aa15.7■□□□□ 0.1
CLIP3-201ENST00000360535 SCAF11Q99590 1463 aaKnown RBP15.7■□□□□ 0.1
CLIP3-201ENST00000360535 CHD1O14646 1710 aa15.7■□□□□ 0.1
CLIP3-201ENST00000360535 E9PSI1 815 aa15.69■□□□□ 0.1
CLIP3-201ENST00000360535 KANK1Q14678 1352 aa15.69■□□□□ 0.1
CLIP3-201ENST00000360535 GGT6Q6P531 493 aa15.69■□□□□ 0.1
CLIP3-201ENST00000360535 USP35Q9P2H5 1018 aa15.69■□□□□ 0.1
CLIP3-201ENST00000360535 TNNQ9UQP3 1299 aa15.69■□□□□ 0.1
CLIP3-201ENST00000360535 ASXL1Q8IXJ9 1541 aa15.69■□□□□ 0.1
CLIP3-201ENST00000360535 SCAPERQ9BY12 1400 aa15.68■□□□□ 0.1
CLIP3-201ENST00000360535 EIF3AQ14152 1382 aaKnown RBP15.68■□□□□ 0.1
CLIP3-201ENST00000360535 CENPJQ9HC77 1338 aaPredicted RBP15.68■□□□□ 0.1
CLIP3-201ENST00000360535 BRPF3Q9ULD4 1205 aa15.68■□□□□ 0.1
CLIP3-201ENST00000360535 FRAT2O75474 233 aaPredicted RBP15.68■□□□□ 0.1
CLIP3-201ENST00000360535 CFAP65Q6ZU64 1925 aaKnown RBP15.67■□□□□ 0.1
CLIP3-201ENST00000360535 ATP10AO60312 1499 aa15.67■□□□□ 0.1
CLIP3-201ENST00000360535 UGGT1Q9NYU2 1555 aa15.66■□□□□ 0.1
CLIP3-201ENST00000360535 SLKQ9H2G2 1235 aaPredicted RBP15.66■□□□□ 0.1
CLIP3-201ENST00000360535 ABCC2Q92887 1545 aa15.66■□□□□ 0.1
CLIP3-201ENST00000360535 WWC1Q8IX03 1113 aa15.66■□□□□ 0.1
CLIP3-201ENST00000360535 SEC24BO95487 1268 aa15.65■□□□□ 0.1
CLIP3-201ENST00000360535 GSE1Q14687 1217 aa15.65■□□□□ 0.1
CLIP3-201ENST00000360535 ARXQ96QS3 562 aa15.65■□□□□ 0.1
CLIP3-201ENST00000360535 PLXNC1O60486 1568 aa15.65■□□□□ 0.1
CLIP3-201ENST00000360535 NKTRP30414 1462 aaKnown RBP15.65■□□□□ 0.1
CLIP3-201ENST00000360535 SPRYD3Q8NCJ5 442 aa15.64■□□□□ 0.09
CLIP3-201ENST00000360535 MADDQ8WXG6 1647 aa15.64■□□□□ 0.09
CLIP3-201ENST00000360535 TCP11L2Q8N4U5 519 aa15.63■□□□□ 0.09
CLIP3-201ENST00000360535 LAMC1P11047 1609 aa15.63■□□□□ 0.09
CLIP3-201ENST00000360535 MTHFSP49914 203 aa15.62■□□□□ 0.09
CLIP3-201ENST00000360535 ZBTB4Q9P1Z0 1013 aaPredicted RBP15.62■□□□□ 0.09
CLIP3-201ENST00000360535 INSRP06213 1382 aa15.62■□□□□ 0.09
CLIP3-201ENST00000360535 TRMT2AQ8IZ69 625 aaKnown RBP15.61■□□□□ 0.09
CLIP3-201ENST00000360535 PIK3C2GO75747 1445 aa15.61■□□□□ 0.09
CLIP3-201ENST00000360535 CLTCL1P53675 1640 aa15.61■□□□□ 0.09
CLIP3-201ENST00000360535 U2AF1L5P0DN76 240 aaPredicted RBP15.61■□□□□ 0.09
CLIP3-201ENST00000360535 U2AF1Q01081 240 aaKnown RBP eCLIP15.61■□□□□ 0.09
CLIP3-201ENST00000360535 STK26Q9P289 416 aa15.6■□□□□ 0.09
CLIP3-201ENST00000360535 NSD3Q9BZ95 1437 aa15.6■□□□□ 0.09
CLIP3-201ENST00000360535 RLBP1P12271 317 aa15.59■□□□□ 0.09
CLIP3-201ENST00000360535 U2SURPO15042 1029 aaKnown RBP15.59■□□□□ 0.09
CLIP3-201ENST00000360535 RNF17Q9BXT8 1623 aaKnown RBP15.59■□□□□ 0.09
CLIP3-201ENST00000360535 CGNL1Q0VF96 1302 aa15.59■□□□□ 0.09
CLIP3-201ENST00000360535 ABCC1P33527 1531 aa15.59■□□□□ 0.09
CLIP3-201ENST00000360535 SYNMO15061 1565 aa15.58■□□□□ 0.08
CLIP3-201ENST00000360535 IQGAP1P46940 1657 aa15.58■□□□□ 0.08
CLIP3-201ENST00000360535 ZCCHC11Q5TAX3 1644 aaKnown RBP15.58■□□□□ 0.08
CLIP3-201ENST00000360535 ERVK-7P63135 1459 aa15.57■□□□□ 0.08
CLIP3-201ENST00000360535 RUNDC1Q96C34 613 aa15.57■□□□□ 0.08
CLIP3-201ENST00000360535 PCDHB15Q9Y5E8 787 aa15.57■□□□□ 0.08
CLIP3-201ENST00000360535 NOS1P29475 1434 aa15.57■□□□□ 0.08
CLIP3-201ENST00000360535 TRPM2O94759 1503 aa15.56■□□□□ 0.08
CLIP3-201ENST00000360535 TSR2Q969E8 191 aaKnown RBP15.56■□□□□ 0.08
CLIP3-201ENST00000360535 RARSP54136 660 aaKnown RBP15.56■□□□□ 0.08
CLIP3-201ENST00000360535 CABP2Q9NPB3 220 aa15.56■□□□□ 0.08
CLIP3-201ENST00000360535 STAC3Q96MF2 364 aa15.56■□□□□ 0.08
CLIP3-201ENST00000360535 PDE3AQ14432 1141 aa15.55■□□□□ 0.08
CLIP3-201ENST00000360535 SPHKAPQ2M3C7 1700 aa15.55■□□□□ 0.08
CLIP3-201ENST00000360535 FANCAO15360 1455 aa15.55■□□□□ 0.08
CLIP3-201ENST00000360535 KDM5AP29375 1690 aaKnown RBP15.55■□□□□ 0.08
CLIP3-201ENST00000360535 CFAP53Q96M91 514 aa15.55■□□□□ 0.08
CLIP3-201ENST00000360535 FTSJ3Q8IY81 847 aaKnown RBP15.54■□□□□ 0.08
CLIP3-201ENST00000360535 PTPRTO14522 1441 aa15.54■□□□□ 0.08
CLIP3-201ENST00000360535 PDZRN3Q9UPQ7 1066 aa15.54■□□□□ 0.08
CLIP3-201ENST00000360535 ADGRL1O94910 1474 aa15.52■□□□□ 0.08
CLIP3-201ENST00000360535 ZFYVE16Q7Z3T8 1539 aa15.52■□□□□ 0.08
Retrieved 100 of 20,778 RNA–protein pairs in 13.4 ms